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2019-12-06gnu: r-irkernel: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-irkernel): Update to 1.1.
2019-12-06gnu: r-listenv: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-listenv): Update to 0.8.0.
2019-12-06gnu: r-spam: Update to 2.5-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-spam): Update to 2.5-0.
2019-12-06gnu: r-multicool: Update to 0.1-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-multicool): Update to 0.1-11.
2019-12-06gnu: r-factoextra: Update to 1.0.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-factoextra): Update to 1.0.6.
2019-12-06gnu: r-renv: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.9.0.
2019-12-06gnu: r-openxlsx: Update to 4.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.4. [propagated-inputs]: Remove r-rlang.
2019-12-06gnu: r-heatmaply: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply): Update to 1.0.0. [propagated-inputs]: Add r-egg.
2019-12-06gnu: Add r-egg.Ricardo Wurmus
* gnu/packages/cran.scm (r-egg): New variable.
2019-12-06gnu: r-cubature: Update to 2.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-cubature): Update to 2.0.4.
2019-12-06gnu: r-geometry: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-geometry): Update to 0.4.5.
2019-12-06gnu: r-htmltable: Update to 1.13.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmltable): Update to 1.13.3.
2019-12-06gnu: ruby-i18n: Update to 1.7.0.Björn Höfling
* gnu/packages/ruby.scm (ruby-i18n): Update to 1.7.0. [home-page]: Update to new location.
2019-12-06gnu: ruby-public-suffix: Update to 4.0.1.Björn Höfling
* gnu/packages/ruby.scm (ruby-public-suffix): Update to 4.0.1.
2019-12-06gnu: ruby-addressable: Update to 2.7.0.Björn Höfling
* gnu/packages/ruby.scm (ruby-addressable): Update to 2.7.0.
2019-12-06gnu: ruby-rspec-its: Update to 1.3.0.Björn Höfling
* gnu/packages/ruby.scm (ruby-rspec-its): Update to 1.3.0. [source]: Remove patch. [arguments]: Add phase to fix ffi-dependency-version. [native-inputs]: Add ruby-ffi.
2019-12-06gnu: Add python-geoip2.Hartmut Goebel
* gnu/packages/geo.scm (python-geoip2): New variable.
2019-12-06gnu: Add python-maxminddb.Hartmut Goebel
* gnu/packages/geo.scm (python-maxminddb): New variable.
2019-12-06gnu: Add libmaxminddb.Hartmut Goebel
* gnu/packages/geo.scm (libmaxminddb): New variable.
2019-12-06gnu: Add gunicorn.Hartmut Goebel
* gnu/packages/python-web.scm (gunicorn): New variable
2019-12-06gnu: Add ncompress.Jan Nieuwenhuizen
* gnu/packages/compression.scm (ncompress): New variable. * gnu/packages/patches/compress-fix-softlinks.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-12-05gnu: linux-libre: Update to 5.3.15.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.15. (linux-libre-5.3-pristine-source): Update hash.
2019-12-05gnu: linux-libre@4.19: Update to 4.19.88.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.88. (linux-libre-4.19-pristine-source): Update hash.
2019-12-05gnu: linux-libre@4.14: Update to 4.14.158.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.158. (linux-libre-4.14-pristine-source): Update hash.
2019-12-05gnu: linux-libre@4.9: Update to 4.9.206.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.206. (linux-libre-4.9-pristine-source): Update hash.
2019-12-05gnu: linux-libre@4.4: Update to 4.4.206.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.206. (linux-libre-4.4-pristine-source): Update hash.
2019-12-05gnu: Add west.Clément Lassieur
* gnu/packages/embedded.scm (west): New variable.
2019-12-05gnu: Add python-pykwalify.Clément Lassieur
* gnu/packages/python-xyz.scm (python-pykwalify): New variable.
2019-12-05gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-05gnu: libimagequant: Update to 2.12.5.Tobias Geerinckx-Rice
* gnu/packages/image.scm (libimagequant): Update to 2.12.5.
2019-12-05gnu: procenv: Update to 0.51.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (procenv): Update to 0.51.
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to ↵Tobias Geerinckx-Rice
javascript and stumpwm to wm." This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’.
2019-12-05gnu: librsvg-next: Use generate-all-checksums.Efraim Flashner
* gnu/packages/gnome.scm (librsvg-next)[arguments]: Use generate-all-checksums instead of manually traversing the directories.
2019-12-05Revert "build-system/linux-module: Accept a #:make-flags keyword."Efraim Flashner
I should've tested this better before pushing the commit. This reverts commit fabd4900d8fb739a55e2dff76dee3a29b2a90bb1.
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-04gnu: Remove unused module import.Marius Bakke
* gnu/packages/image.scm: Do not import (gnu packages gcc).
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.Marius Bakke
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field.
2019-12-04gnu: pd: Update to 0.50-2.Tobias Geerinckx-Rice
* gnu/packages/music.scm (pd): Update to 0.50-2.
2019-12-04gnu: libgig: Update to 4.2.0.Tobias Geerinckx-Rice
* gnu/packages/music.scm (libgig): Update to 4.2.0.
2019-12-04gnu: imapfilter: Update to 2.6.16.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (imapfilter): Update to 2.6.16. [arguments]: Remove ‘fix-include-path’ phase.
2019-12-04gnu: mpop: Update to 1.4.6.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (mpop): Update to 1.4.6.
2019-12-04gnu: girara: Fetch sources from git.Tobias Geerinckx-Rice
The tarball URI is having server issues. Use the upstream git repository instead until this is resolved. Reported by Marius Bakke <mbakke@fastmail.com>. * gnu/packages/gtk.scm (girara)[source]: Switch to GIT-FETCH.
2019-12-04gnu: emacs-org-contrib: Fix build.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Refer to the updated installation directory.
2019-12-04gnu: emacs-scel: Fix build.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-scel): Refer to the updated installation directory.
2019-12-04gnu: knot: Update to 2.9.1 [fixes CVE-2019-19331].Leo Famulari
* gnu/packages/dns.scm (knot): Update to 2.9.1.
2019-12-04gnu: notmuch: Fix build.Pierre Neidhardt
* gnu/packages/mail.scm (notmuch): Refer to the updated installation directory.
2019-12-04gnu: ffmpeg: Update to 3.4.7.Marius Bakke
* gnu/packages/video.scm (ffmpeg-3.4): Update to 3.4.7.
2019-12-04gnu: feh: Update to 3.3.Marius Bakke
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (feh): Update to 3.3. [source](patches): Remove.
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: Remove duplicate nlohmann-json-cpp package.Marius Bakke
* gnu/packages/serialization.scm (nlohmann-json-cpp): Move variable ... * gnu/packages/cpp.scm (nlohmann-json-cpp): ... here. Mark as deprecated by JSON-MODERN-CXX. * gnu/packages/jupyter.scm (xeus)[inputs]: Change NLOHMANN-JSON-CPP to JSON-MODERN-CXX. * gnu/packages/video.scm (mkvtoolnix)[inputs]: Likewise.
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