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2020-01-27gnu: guile-charting: Add "guile3.0-charting" variant.Ludovic Courtès
* gnu/packages/plotutils.scm (guile-charting)[source]: In 'snippet', have 'configure' look for 3.0. (guile3.0-charting): New variable.
2020-01-27git-authenticate: Add roptat's new key.Ludovic Courtès
This is a followup to 2cbede5935eb6a40173bbdf30a9ad22bf7574c22. * build-aux/git-authenticate.scm (%committers): Add roptat's new key.
2020-01-27gnu: sicp: Do not import module from the host Guile.Ludovic Courtès
This is a followup to 4144eb195c28cbfd1ca2a131cf4b64afcad713ae and 5e61de242156cdb3314abac168d9682ca7a4c28f. * gnu/packages/scheme.scm (sicp)[arguments]: Remove (srfi srfi-26) from #:modules.
2020-01-27gnu: Add r-deconstructsigs.Roel Janssen
* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-01-27gnu: gnome: Remove gnome-initial-setup.Danny Milosavljevic
Fixes <https://bugs.gnu.org/39281> Reported by Jack Hill <jackhill@jackhill.us>. * gnu/packages/gnome.scm (gnome)[propagated-inputs]: Remove gnome-initial-setup.
2020-01-27gnu: r-gviz: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.1.
2020-01-27gnu: r-genomicfeatures: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.1.
2020-01-27gnu: r-s4vectors: Update to 0.24.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.3.
2020-01-27gnu: r-multiassayexperiment: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
2020-01-27gnu: r-ropls: Update to 1.18.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
2020-01-27gnu: r-destiny: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
2020-01-27gnu: linux-libre@4.19: Update to 4.19.99.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.99. (linux-libre-4.19-pristine-source): Update hash.
2020-01-27gnu: linux-libre@4.14: Update to 4.14.168.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.168. (linux-libre-4.14-pristine-source): Update hash.
2020-01-27gnu: emacs-gif-screencast: Update to 1.1.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-gif-screencast): Update to 1.1.
2020-01-27gnu: light: Install udev rules to allow sudo-less invocations.Amin Bandali
* gnu/packages/linux.scm (light)[arguments]: Substitute the absolute paths of chgrp and chmod in 90-backlight.rules and install the rules file to the special lib/udev/rules.d/ directory of the out output. This allows for any member of the video group to set brightness using light without sudo. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-01-27build: cargo-build-system: Add pkg-config environment variables.Efraim Flashner
* guix/build/cargo-build-system.scm (configure): Add environment variables to use system libgit2 and libssh2. * gnu/packages/crates-io.scm (rust-libgit2-sys-0.10, rust-libssh2-sys-0.2)[arguments]: Remove LIBGIT2 and LIBSSH2 environment variable settings. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
2020-01-27gnu: rust-pcre2-sys-0.2: Delete vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-pcre2-sys-0.2)[source]: Delete vendored code. [arguments]: Remove custom phase. (rust-pcre2-0.2, rust-grep-pcre2-0.1)[arguments]: Enable build. [native-inputs]: Add pkg-config, pcre2.
2020-01-27gnu: rust-libz-sys-1.0: Remove vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-libz-sys-1.0)[source]: Remove vendored code. [arguments]: Remove custom phase. (rust-libgit2-sys-0.10)[arguments]: Don't unvendor missing code. (rust-libssh2-sys-0.2)[arguments]: Same. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
2020-01-27gnu: rust-lzma-sys-0.1: Remove vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-lzma-sys-0.1)[source]: Remove vendored code. [arguments]: Remove custom phase.
2020-01-27gnu: rust-libssh2-sys-0.2: Remove vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-libssh2-sys-0.2)[source]: Remove vendored code. [arguments]: Don't remove missing vendored code. (rust-libgit2-sys-0.10)[arguments]: Same. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
2020-01-27gnu: rust-jemalloc-sys-0.3: Remove vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-jemalloc-sys-0.3)[source]: Remove vendored code. [arguments]: Don't remove missing vendored code.
2020-01-27gnu: rust-libgit2-sys-0.10: Remove vendored code.Efraim Flashner
* gnu/packages/crates-io.scm (rust-libgit2-sys-0.10)[source]: Remove vendored code. [arguments]: Don't remove missing vendored code. * gnu/packages/rust-apps.scm (tokei)[arguments]: Same.
2020-01-27build: cargo-build-system: Allow patched crates.Efraim Flashner
* guix/build/cargo-build-system.scm (crate-src?): Don't check for a gzipped tarball, just make sure it's not a directory.
2020-01-27gnu: r-fpc: Update to 2.2-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-4.
2020-01-27gnu: r-rrcov: Update to 1.5-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-2. [propagated-inputs]: Remove r-cluster.
2020-01-27gnu: r-tidyr: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 1.0.2.
2020-01-27gnu: r-rngtools: Update to 1.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rngtools): Update to 1.5. [propagated-inputs]: Remove r-pkgmaker and r-stringr.
2020-01-27gnu: r-pkgmaker: Update to 0.31.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pkgmaker): Update to 0.31. [propagated-inputs]: Add r-assertthat.
2020-01-27gnu: r-xml: Update to 3.99-0.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.3.
2020-01-27gnu: r-blob: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-blob): Update to 1.2.1. [propagated-inputs]: Remove r-prettyunits.
2020-01-27gnu: r-rmarkdown: Update to 2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.1.
2020-01-27gnu: r-catools: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-catools): Update to 1.18.0.
2020-01-27gnu: r-rcpparmadillo: Update to 0.9.800.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.800.4.0.
2020-01-27gnu: r-rlang: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rlang): Update to 0.4.3.
2020-01-27gnu: r-knitr: Update to 1.27.Ricardo Wurmus
* gnu/packages/statistics.scm (r-knitr): Update to 1.27.
2020-01-27gnu: r-foreign: Update to 0.8-75.Ricardo Wurmus
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-75.
2020-01-27gnu: r-shinycssloaders: Update to 0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinycssloaders): Update to 0.3.
2020-01-27gnu: r-idpmisc: Update to 1.1.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20.
2020-01-27gnu: r-rngwell: Update to 0.10-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rngwell): Update to 0.10-6.
2020-01-27gnu: r-bio3d: Update to 2.4-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-1.
2020-01-27gnu: r-parameters: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.4.1.
2020-01-27gnu: r-leiden: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-leiden): Update to 0.3.2.
2020-01-27gnu: r-rhpcblasctl: Update to 0.20-17.Ricardo Wurmus
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
2020-01-27gnu: r-threejs: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-threejs): Update to 0.3.3. [native-inputs]: Use jquery 1.12.4 and threejs version r111. [arguments]: Adjust.
2020-01-27gnu: r-farver: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-farver): Update to 2.0.3.
2020-01-27gnu: r-adegenet: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
2020-01-27gnu: r-cobs: Update to 1.3-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
2020-01-27gnu: r-dorng: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-dorng): Update to 1.8.2. [propagated-inputs]: Remove r-pkgmaker.
2020-01-27gnu: r-future: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future): Update to 1.16.0.
2020-01-27gnu: r-rmpfr: Update to 0.8-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1. [inputs]: Add gmp. [native-inputs]: Add pkg-config.
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