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2023-04-30gnu: clitest: Fix test failure with newer grep.•••* gnu/packages/patches/clitest-grep-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/check.scm (clitest)[source](patches): New field. [arguments]: While at it, remove obsolete substitution. Marius Bakke
2023-04-30gnu: ungoogled-chromium: Update to 112.0.5615.165-1.•••* gnu/packages/chromium.scm (%chromium-version): Set to 112.0.5615.165. (%ungoogled-origin, ungoogled-chromium): Update hashes. Marius Bakke
2023-04-30gnu: ungoogled-chromium: Update to 111.0.5563.146-1.•••* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M111. (%chromium-version): Set to 111.0.5563.146. (%ungoogled-origin): Update hash. (%chromium-gcc-patchset, gcc-patch, %gcc-patches): Remove variables. (%arch-patches): Remove obsolete. (ungoogled-chromium)[source](sha256): Update hash. Marius Bakke
2023-04-30gnu: ungoogled-chromium: Update to 110.0.5481.177-1.•••* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M110. (%chromium-version): Set to 110.0.5481.177. (%debian-revision): Bump. (%ungoogled-origin, %debian-origin): Update hashes. (%debian-patches): Remove obsolete patch. (ungoogled-chromium-snippet): Use upstream jsoncpp unbundle script. (ungoogled-chromium)[source](sha256): Update hash. [arguments]: Remove obsolete configure flags and substitution. Use system libffi. Marius Bakke
2023-04-30gnu: ungoogled-chromium: Don't add absolute references to libGL and libvulkan.•••Keeping track of the uses of these libraries is a lot of work and ultimately not worth the trouble -- especially since Chromium supports multiple libGL's with different ABIs. Instead we take the easy route and rely on a search path. * gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Remove patching of libGL.so and libvulkan.so. Instead wrap with LD_LIBRARY_PATH. Marius Bakke
2023-04-30gnu: emacs: Use librsvg-for-system.•••* gnu/packages/emacs.scm (emacs)[inputs]: Replace librsvg input logic with librsvg-for-system. Efraim Flashner
2023-04-30gnu: deluge: Use librsvg-for-system.•••* gnu/packages/bittorent.scm (deluge)[native-inputs]: Replace librsvg input logic with librsvg-for-system. Efraim Flashner
2023-04-30gnu: cl-clsql: Build with mariadb.•••* gnu/packages/lisp-xyz.scm (cl-clsql)[inputs]: Remove mysql. Add mariadb:dev. Efraim Flashner
2023-04-30gnu: sbcl-clsql: Build with mariadb.•••* gnu/packages/lisp-xyz.scm (sbcl-clsql)[inputs]: Remove mysql. Add mariadb:dev, mariadb:lib. [arguments]: Adjust custom 'build-helper-library phase to build with and link to mariadb. Efraim Flashner
2023-04-30gnu: opensmtpd-extras: Build with mariadb.•••* gnu/packages/mail.scm (opensmtpd-extras)[inputs]: Remove mysql. Add mariadb:dev. Efraim Flashner
2023-04-30gnu: ulogd: Build with mariadb.•••* gnu/packages/linux.scm (ulogd)[inputs]: Remove mysql. Add mariadb:dev. [arguments]: Adjust configure-flags accordingly. Efraim Flashner
2023-04-30gnu: inspircd: Build with mariadb.•••* gnu/packages/irc.scm (inspircd)[inputs]: Remove mysql. Add mariadb:dev. Efraim Flashner
2023-04-30gnu: neko: Build with mariadb.•••* gnu/packages/haxe.scm (neko)[inputs]: Remove mysql. Add mariadb:dev, mariadb:lib. Efraim Flashner
2023-04-30gnu: ghc-mysql: Build with mariadb.•••* gnu/packages/haskell-xyz.scm (ghc-mysql)[inputs]: Remove mysql. Add mariadb:dev. Efraim Flashner
2023-04-30gnu: sysbench: Build with mariadb.•••* gnu/packages/benchmark.scm (sysbench)[arguments]: Remove mysql flag. [inputs]: Remove mysql. Add mariadb:dev. Efraim Flashner
2023-04-30gnu: r-ffbase: Fix build with R 4.3.0.•••* gnu/packages/cran.scm (r-ffbase)[arguments]: Add phase 'r-compatibility. Ricardo Wurmus
2023-04-30gnu: mod-wsgi: Make sure not to keep a store reference to HTTPD.•••* gnu/packages/web.scm (mod-wsgi)[inputs]: Move httpd ... [native-inputs]: ... to here. [arguments]: Forbid keeping a reference to httpd. Leo Famulari
2023-04-30gnu: 389-ds-base: Make sure not to keep a store reference to HTTPD.•••* gnu/packages/openldap.scm (389-ds-base)[inputs]: Move httpd ... [native-inputs]: ... to here. [arguments]: Forbid keeping a reference to httpd. Leo Famulari
2023-04-30gnu: neko: Make sure not to keep a store reference to HTTPD.•••* gnu/packages/haxe.scm (neko): Move httpd ... [native-inputs]: ... to here. [arguments]: Forbid keeping a reference to httpd. Leo Famulari
2023-04-30build-system/cmake: Add support for the #:disallowed-references key.•••* guix/build-system/cmake.scm (cmake-build, cmake-cross-build): Add #:disallowed-references. Leo Famulari
2023-04-30gnu: httpd: Update to 2.4.57 [security fixes].•••Fixes CVE-2023-27522, CVE-2023-25690, CVE-2022-37436, CVE-2022-36760, CVE-2006-20001, CVE-2022-31813, CVE-2022-30556, CVE-2022-30522, CVE-2022-29404, CVE-2022-28615, CVE-2022-28614, CVE-2022-28330, CVE-2022-26377, CVE-2022-23943, CVE-2022-22721, CVE-2022-22720, and CVE-2022-22719. * gnu/packages/web.scm (httpd): Update to 2.4.57. (httpd/pinned): New variable. * gnu/packages/gnome.scm (libsoup-minimal): Replace httpd with httpd/pinned. Leo Famulari
2023-04-29gnu: r-motifstack: Update to 1.44.1.•••* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1. Ricardo Wurmus
2023-04-29gnu: r-chippeakanno: Update to 3.34.1.•••* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1. Ricardo Wurmus
2023-04-29gnu: rust: Disable support for aarch64-linux, riscv64-linux.•••Support is currently broken and blocks too many other packages. * gnu/packages/gnome.scm (librsvg-for-system): Only use librsvg on x86_64-linux. * gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove aarch64-linux, riscv64-linux. Efraim Flashner
2023-04-29gnu: r-norm: Update to 1.0-11.0.•••* gnu/packages/statistics.scm (r-norm): Update to 1.0-11.0. Ricardo Wurmus
2023-04-29gnu: r-lme4: Update to 1.1-33.•••* gnu/packages/statistics.scm (r-lme4): Update to 1.1-33. Ricardo Wurmus
2023-04-29gnu: r-sfsmisc: Update to 1.1-15.•••* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-15. Ricardo Wurmus
2023-04-29gnu: r-checkmate: Update to 2.2.0.•••* gnu/packages/statistics.scm (r-checkmate): Update to 2.2.0. Ricardo Wurmus
2023-04-29gnu: r-xml2: Update to 1.3.4.•••* gnu/packages/statistics.scm (r-xml2): Update to 1.3.4. Ricardo Wurmus
2023-04-29gnu: r-dplyr: Update to 1.1.2.•••* gnu/packages/statistics.scm (r-dplyr): Update to 1.1.2. Ricardo Wurmus
2023-04-29gnu: r-rlang: Update to 1.1.1.•••* gnu/packages/statistics.scm (r-rlang): Update to 1.1.1. Ricardo Wurmus
2023-04-29gnu: r-microbenchmark: Update to 1.4.10.•••* gnu/packages/statistics.scm (r-microbenchmark): Update to 1.4.10. Ricardo Wurmus
2023-04-29gnu: r-mass: Update to 7.3-59.•••* gnu/packages/statistics.scm (r-mass): Update to 7.3-59. Ricardo Wurmus
2023-04-29gnu: r-measurements: Update to 1.5.1.•••* gnu/packages/cran.scm (r-measurements): Update to 1.5.1. Ricardo Wurmus
2023-04-29gnu: r-vroom: Update to 1.6.3.•••* gnu/packages/cran.scm (r-vroom): Update to 1.6.3. Ricardo Wurmus
2023-04-29gnu: r-qtl2: Update to 0.32.•••* gnu/packages/cran.scm (r-qtl2): Update to 0.32. Ricardo Wurmus
2023-04-29gnu: r-qtl: Update to 1.60.•••* gnu/packages/cran.scm (r-qtl): Update to 1.60. Ricardo Wurmus
2023-04-29gnu: r-yardstick: Update to 1.2.0.•••* gnu/packages/cran.scm (r-yardstick): Update to 1.2.0. [propagated-inputs]: Add r-cli, r-lifecycle, and r-tibble. Ricardo Wurmus
2023-04-29gnu: r-spatstat: Update to 3.0-5.•••* gnu/packages/cran.scm (r-spatstat): Update to 3.0-5. Ricardo Wurmus
2023-04-29gnu: r-spatstat-model: Update to 3.2-3.•••* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-3. Ricardo Wurmus
2023-04-29gnu: r-scatterpie: Update to 0.1.9.•••* gnu/packages/cran.scm (r-scatterpie): Update to 0.1.9. [propagated-inputs]: Add r-dplyr. Ricardo Wurmus
2023-04-29gnu: r-rcdd: Update to 1.5-2.•••* gnu/packages/cran.scm (r-rcdd): Update to 1.5-2. Ricardo Wurmus
2023-04-29gnu: r-snowballc: Update to 0.7.1.•••* gnu/packages/cran.scm (r-snowballc): Update to 0.7.1. Ricardo Wurmus
2023-04-29gnu: r-rgdal: Update to 1.6-6.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.6-6. Ricardo Wurmus
2023-04-29gnu: r-parameters: Update to 0.21.0.•••* gnu/packages/cran.scm (r-parameters): Update to 0.21.0. Ricardo Wurmus
2023-04-29gnu: r-terra: Update to 1.7-29.•••* gnu/packages/cran.scm (r-terra): Update to 1.7-29. Ricardo Wurmus
2023-04-29gnu: r-batchtools: Update to 0.9.17.•••* gnu/packages/cran.scm (r-batchtools): Update to 0.9.17. Ricardo Wurmus
2023-04-29gnu: r-s2: Update to 1.1.3.•••* gnu/packages/cran.scm (r-s2): Update to 1.1.3. Ricardo Wurmus
2023-04-29gnu: r-units: Update to 0.8-2.•••* gnu/packages/cran.scm (r-units): Update to 0.8-2. Ricardo Wurmus
2023-04-29gnu: r-epi: Update to 2.47.1.•••* gnu/packages/cran.scm (r-epi): Update to 2.47.1. Ricardo Wurmus
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