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2019-03-04tests: Use non-deprecated (guix store) API.Ludovic Courtès
This is a followup to f9e8a12379c6fefc9e5c3c7fc3926599bbefc013. * gnu/tests/base.scm (run-basic-test)["/run/current-system is a GC root"]: Use 'store-protocol-error?' instead of 'nix-protocol-error?'.
2019-03-04gnu: Add r-htscluster.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-htscluster): New variable.
2019-03-04gnu: Add r-capushe.Ricardo Wurmus
* gnu/packages/cran.scm (r-capushe): New variable.
2019-03-04gnu: python-matplotlib-documentation: Fix build.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-matplotlib-documentation) [native-inputs]: Add python-ipykernel; replace texlive with a texlive-union consisting of texlive-latex-amsfonts, texlive-latex-amsmath, texlive-latex-enumitem, texlive-latex-expdlist, texlive-latex-preview, texlive-latex-type1cm, texlive-latex-ucs, texlive-generic-pdftex, texlive-fonts-amsfonts, texlive-fonts-ec, texlive-fonts-adobe-times, and texlive-fonts-txfonts. [arguments]: Do not build PDF, remove PDF-related changes; patch to avoid dependency on network resources.
2019-03-04gnu: emacs-helm-emms: Update to 20190304.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-emms): Update to 20190304.
2019-03-04gnu: emacs-evil-magit: Update to 20190224.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-evil-magit): Update to 20190224.
2019-03-04gnu: emacs-magit-todos: Update to 1.1.7.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-magit-todos): Update to 1.1.7.
2019-03-04gnu: emacs-magit: Update to 2.90.1.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-magit): Update to 2.90.1.
2019-03-03gnu: avidemux: Build with modular qt.Efraim Flashner
* gnu/packages/video.scm (avidemux)[inputs]: Remove qt, add qtbase, qttools.
2019-03-03gnu: avidemux: Update to 2.7.1.Efraim Flashner
* gnu/packages/video.scm (avidemux): Update to 2.7.1. [arguments]: Update bundled ffmpeg to 3.3.7.
2019-03-03gnu: libopenshot: Build with modular qt.Efraim Flashner
* gnu/packages/video.scm (libopenshot)[propagated-inputs]: Remove qt, add qtbase, qtmultimedia.
2019-03-03gnu: libopenshot: Remove bundled libraries.Efraim Flashner
* gnu/packages/video.scm (libopenshot)[source]: Add snippet to remove bundled libraries.
2019-03-03gnu: libopenshot: Fix tests on other architectures.Efraim Flashner
* gnu/packages/video.scm (libopenshot)[source]: Add patch. * gnu/packages/patches/libopenshot-fixup-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2019-03-03gnu: Add emacs-isearch+.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-isearch+): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-03-03gnu: wine-staging: Add faudio support.Rutger Helling
* gnu/packages/wine.scm (wine-staging)[inputs]: Add faudio. [arguments]: Adjust patchinstall.sh to faudio. * gnu/packages/wine.scm (wine64-staging)[arguments]: Adjust patchinstall.sh to faudio.
2019-03-03gnu: Add faudio.Rutger Helling
* gnu/packages/audio.scm (faudio): New variable.
2019-03-03gnu: wine-staging: Update to 4.3.Rutger Helling
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.3. * gnu/packages/wine.scm (wine-staging): Update to 4.3.
2019-03-03gnu: eolie: Update to 0.9.52.Ricardo Wurmus
* gnu/packages/gnome.scm (eolie): Update to 0.9.52.
2019-03-03gnu: musescore: Update to 3.0.4.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.0.4.
2019-03-02gnu: python-dask: Update to 1.1.3.Marius Bakke
* gnu/packages/python-xyz.scm (python-dask): Update to 1.1.3.
2019-03-02gnu: appstream-glib: Update to 0.7.15.Marius Bakke
* gnu/packages/glib.scm (appstream-glib): Update to 0.7.15.
2019-03-02gnu: audit: Update to 2.8.5.Marius Bakke
* gnu/packages/admin.scm (audit): Update to 2.8.5.
2019-03-02gnu: libsecret: Update to 0.18.8.Marius Bakke
* gnu/packages/gnome.scm (libsecret): Update to 0.18.8.
2019-03-02gnu: ungoogled-chromium: Update to 72.0.3626.121-0.a80839c [fixes ↵Marius Bakke
CVE-2019-5786]. * gnu/packages/chromium.scm (%chromium-version): Update to 72.0.3626.121. (ungoogled-chromium-source): Update hash.
2019-03-02gnu: WebKitGTK: Update to 2.22.7.Marius Bakke
* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.7.
2019-03-02gnu: ldb: Update to 1.6.2.Marius Bakke
* gnu/packages/samba.scm (ldb): Update to 1.6.2. [native-inputs]: Change from PYTHON-2 to PYTHON. Add WHICH.
2019-03-02gnu: tdb: Update to 1.3.18.Marius Bakke
* gnu/packages/databases.scm (tdb): Update to 1.3.18. [native-inputs]: Add WHICH. Change PYTHON-2 to PYTHON.
2019-03-02gnu: tevent: Update to 0.9.39.Marius Bakke
* gnu/packages/samba.scm (tevent): Update to 0.9.39. [native-inputs]: Add WHICH. Change PYTHON-2 to PYTHON.
2019-03-02gnu: talloc: Update to 2.1.16.Marius Bakke
* gnu/packages/samba.scm (talloc): Update to 2.1.16. [native-inputs]: Add WHICH. [inputs]: Change from PYTHON-2 to PYTHON. (talloc/static)[arguments]: Adjust GCC command line.
2019-03-02gnu: pigx-chipseq: Update to 0.0.31.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.31.
2019-03-02gnu: lyx: Parameterize more version variables.Efraim Flashner
* gnu/packages/tex.scm (lyx)[source]: Parameterize the version string. [arguments]: Parameterize version variables in 'configre-flags and in the custom phases 'setenv-check and 'install-symlink.
2019-03-02gnu: lyx: Update to 2.3.2-2.Ricardo Wurmus
* gnu/packages/tex.scm (lyx): Update to 2.3.2-2. [source]: Remove patch. [arguments]: Adjust configure flags; add build phase "fix-compilation-with-boost-1.69"; remove phase "patch-installer"; create missing file in phase "setenv-check". [inputs]: Add mythes. [propagated-inputs]: Replace texlive with a texlive-union containing texlive-fonts-ec.
2019-03-02gnu: emacs-desktop-environment: Update to 20190301.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-desktop-environment): Update to 20190301.
2019-03-01gnu: Add WireGuard.Leo Famulari
* gnu/packages/vpn.scm (wireguard): New variable.
2019-03-01gnu: bundler: Update to 1.17.3.Julien Lepiller
* gnu/packaqes/ruby.scm (bundler): Update to 1.17.3.
2019-03-01gnu: opensmtpd: Remove unused arguments.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (opensmtpd)[arguments]: Remove unused procedure arguments to 'patch-FHS-file-names' phase.
2019-03-01gnu: perl-net-dns: Update to 1.19.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (perl-net-dns): Update to 1.19.
2019-03-01gnu: teximpatient: Build with texlive-union.Ricardo Wurmus
* gnu/packages/tex.scm (teximpatient)[source]: Use url-fetch/tarbomb, so that we can... [arguments]: ...remove the custom "unpack" phase; disable tests instead of deleting the "check" phase; add phase "fix-packaging-error". [native-inputs]: Replace texlive with a texlive-union containing texlive-latex-amsfonts, texlive-fonts-amsfonts, texlive-fonts-adobe-palatino, texlive-fonts-adobe-zapfding, texlive-fonts-knuth-lib, texlive-fonts-mflogo-font, and texlive-generic-pdftex.
2019-03-01gnu: Add texlive-fonts-adobe-zapfding.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-adobe-zapfding): New variable.
2019-03-01gnu: Add texlive-fonts-adobe-palatino.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-adobe-palatino): New variable.
2019-03-01gnu: Add texlive-fonts-mflogo-font.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-mflogo-font): New variable.
2019-03-01gnu: Add texlive-latex-mflogo.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-mflogo): New variable.
2019-03-01gnu: texlive-fonts-knuth-lib: Build all tfm files.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-knuth-lib)[arguments]: Build all tfm files in "build" phase.
2019-03-01gnu: Add texlive-fonts-adobe-times.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-fonts-adobe-times): New variable.
2019-03-01gnu: texlive-latex-geometry: Add missing input.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-latex-geometry)[propagated-inputs]: Add texlive-latex-oberdiek.
2019-03-01gnu: java-eclipse-jetty-http-test-classes: Return #t from all phases.Björn Höfling
* gnu/packages/web.scm (java-eclipse-jetty-http-test-classes)[arguments]: Return #t from 'chdir' phase.
2019-03-01gnu: java-eclipse-jetty-test-helper: Return #t from all phases.Björn Höfling
* gnu/packages/web.scm (java-eclipse-jetty-test-helper)[arguments]: Return #t from 'chdir' phase.
2019-03-01gnu: java-eclipse-sisu-inject: Don't use unstable tarball.Björn Höfling
Using git-file-name also makes the source store-file nicer. * gnu/packages/java.scm (java-eclipse-sisu-inject)[source]: Use git-fetch and git-file-name.
2019-03-01gnu: java-tomcat: Update to 8.5.38.Björn Höfling
* gnu/packages/web.scm (java-tomcat): Update to 8.38.
2019-03-01gnu: coq-flocq: Update to 3.1.0.Dan Frumin
* gnu/packages/coq.scm (coq-flocq): Update to 3.1.0. (coq-interval): Update to 3.4.0. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
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