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2024-02-11gnu: r-curatedtcgadata: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.24.1. Change-Id: I42ae64544b53d6ddd72b948af4093ef4dd31a9c6 Ricardo Wurmus
2024-02-11gnu: r-rhdf5lib: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.24.2. [propagated-inputs]: Remove r-biocstyle and r-stringr. [native-inputs]: Remove r-rmarkdown. Change-Id: I76b1601397bc69651c0b788404c6b0c67d830830 Ricardo Wurmus
2024-02-11gnu: parallel: Update to 20240122....* gnu/packages/parallel.scm (parallel): Update to 20240122. Change-Id: I4e416cbad5b6f4267a9aab7996c9156a861e3ad1 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Andy Tai
2024-02-11gnu: parinfer-rust: Add phase to install editor plugins....* gnu/packages/text-editors.scm (rust-parinfer)[arguments]: Install the bundled Vim and Kakoune plugins. Change-Id: I881315481ec08c59576c4530ae72b877c399fc66 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> (unmatched-parenthesis
2024-02-11gnu: Add python-gguf....* gnu/packages/machine-learning.scm (python-gguf): New variable. Change-Id: Icf6138486cccc5b4c3141424baccf17c4edb3449 Signed-off-by: Andreas Enge <andreas@enge.fr> David Pflug
2024-02-10services: Add ‘virtual-build-machine’ service....* gnu/services/virtualization.scm (<virtual-build-machine>): New record type. (%build-vm-ssh-port, %build-vm-secrets-port, %x86-64-intel-cpu-models): New variables. (qemu-cpu-model-for-date, virtual-build-machine-ssh-port) (virtual-build-machine-secrets-port): New procedures. (%minimal-vm-syslog-config, %virtual-build-machine-operating-system): New variables. (virtual-build-machine-default-image): (virtual-build-machine-account-name) (virtual-build-machine-accounts) (build-vm-shepherd-services) (initialize-build-vm-substitutes) (build-vm-activation) (virtual-build-machine-offloading-ssh-key) (virtual-build-machine-activation) (virtual-build-machine-secret-root) (check-vm-availability) (build-vm-guix-extension): New procedures. (initialize-hurd-vm-substitutes): Remove. (hurd-vm-activation): Rewrite in terms of ‘build-vm-activation’. * gnu/system/vm.scm (linux-image-startup-command): New procedure. (operating-system-for-image): Export. * gnu/tests/virtualization.scm (run-command-over-ssh): New procedure, extracted from… (run-childhurd-test): … here. [test]: Adjust accordingly. (%build-vm-os): New variable. (run-build-vm-test): New procedure. (%test-build-vm): New variable. * doc/guix.texi (Virtualization Services)[Virtual Build Machines]: New section. (Build Environment Setup): Add cross-reference. Change-Id: I0a47652a583062314020325aedb654f11cb2499c Ludovic Courtès
2024-02-10marionette: Add #:peek? to ‘wait-for-tcp-port?’....* gnu/build/marionette.scm (wait-for-tcp-port): Add #:peek? parameter and honor it. Change-Id: Ie7515a5223299390ab8af6fe5aa3cf63ba5c8078 Ludovic Courtès
2024-02-10vm: Add ‘cpu-count’ field to <virtual-machine>....* gnu/system/vm.scm (<virtual-machine>)[cpu-count]: New field. (virtual-machine-compiler): Honor it. Change-Id: I907a89365f32ac7a9981c4ae5f59cf6eb199c3cc Ludovic Courtès
2024-02-10vm: Export <virtual-machine> accessors....* gnu/system/vm.scm: Export. Change-Id: If65d96f4052d070af5baee26f3dd9b233b8480f4 Ludovic Courtès
2024-02-10vm: Add ‘date’ field to <virtual-machine>....* gnu/system/vm.scm (<virtual-machine>)[date]: New field. (virtual-machine-compiler): Honor it. Change-Id: Idab1c152466d57cbc6784c031a99fdfd37080bcb Ludovic Courtès
2024-02-10services: secret-service: Make the endpoint configurable....Until now, the secret service had a hard-coded TCP endpoint on port 1004. This change lets users specify arbitrary socket addresses. * gnu/build/secret-service.scm (socket-address->string): New procedure, taken from Shepherd. (secret-service-send-secrets): Replace ‘port’ by ‘address’ and adjust accordingly. (secret-service-receive-secrets): Likewise. * gnu/services/virtualization.scm (secret-service-shepherd-services): Likewise. (secret-service-operating-system): Add optional ‘address’ parameter and honor it. Adjust ‘start’ method accordingly. Change-Id: I87a9514f1c170dca756ce76083d7182c6ebf6578 Ludovic Courtès
2024-02-10gnu: openmolar-1: Update to release 1.1.6-g81838c8 and partial runtime fix....Fixes <https://issues.guix.gnu.org/29365>. WebKit was removed from Qt5 in favor of WebEngine; upstream addressed this in their last stable release, in 2018. The package still fails at runtime: this commit lays the ground for further fixes. * gnu/packages/medical.scm (openmolar-1): Update to release 1.1.6-g81838c8. [arguments]: Extend 'patch-/usr phase to source file localsettings.py. [inputs]: Add python-pyqtwebengine. [propagated-inputs]: Add qtwebengine-5. Change-Id: Ia4e4c052397201c26834dec2358ca5c20beb581d Signed-off-by: Ludovic Courtès <ludo@gnu.org> Marco Rimoldi
2024-02-10gnu: Add python-scikit-opt....* gnu/packages/python-science.scm (python-scikit-opt): New variable. Change-Id: I47d6b35d9658a37a242b4db61d293fa7efd33802 Signed-off-by: Ludovic Courtès <ludo@gnu.org> TimotheeMathieu
2024-02-10gnu: gnupg: Fix cross-compilation....* gnu/packages/gnupg.scm (gnupg)[arguments]: Pass libraries prefixes when cross-crompiling. Change-Id: I461ba02ddf5bb23277bd6685c2106e4ad37e2184 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Mathieu Othacehe
2024-02-10gnu: vim: Update to 9.1.0059....* gnu/packages/vim.scm (vim): Update to 9.1.0059. Change-Id: Idf89d04a6c4e2297bcaad7a8b275de4a124001a9 Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Nguyễn Gia Phong
2024-02-10gnu: emulators: Adjust copyright header....This is follow up commit 9ffdcb249278d9bb95ffb6c6e9f94b675bb1068c. * gnu/packages/emulators.scm: Update copyright for "Felix Gruber <felgru@posteo.net>". * gnu/packages/simulation.scm: Remove "Copyright © 2024 Felix Gruber <felgru@posteo.net>". Change-Id: I3f39abb0fbe05e7c6af9715fb6cc41c20b6f0a45 Sharlatan Hellseher
2024-02-10gnu: fcft: Enable shaping support....While utf8proc is an optional dependency, it is required for shaping support. Without utf8proc, fcft_rasterize_text_run_utf32() is a no-op. This is a popular function used—among other things—by yambar, foot, fuzzel and fnott. Therefore, many other Linux distributions (Arch, Debian, Fedora, …) enable this feature and I think it would be nice to have in Guix as well. * gnu/packages/fontutils.scm (fcft): Depend on utf8proc. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: I7489dbc7a42ffcca509d090df7d2a6250bf996ff Sören Tempel
2024-02-10gnu: lldb: Update to 17.0.6....* gnu/packages/llvm.scm (lldb): Update to 17.0.6. [inputs]: Change from LLVM-15 and CLANG-15 to LLVM-17 and CLANG-17. Change-Id: Iad04ee722c81ecb223ea4d57d25ea57ca7df59a0 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Greg Hogan
2024-02-10gnu: odamex: Remove package labels....* gnu/packages/games.scm (odamex) [inputs]: Remove labels. Change-Id: Ie4b97a3dfaa3a0ce3a0e7c5c49ed52fe4e222480 Sharlatan Hellseher
2024-02-10gnu: odamex: Unbundle some libraries....* gnu/packages/games.scm (odamex) [snippet]: Remove some bundled libraries which may be replaced by inputs. [arguments] <#:configure-flags>: Add options to build client, master and server. Do not use internal libs explicitly. [native-inputs]: Add pkg-config. Change-Id: I1974febb2f5f37d963ecb5b663d17a330ba23129 Sharlatan Hellseher
2024-02-10gnu: odamex: Update to 10.4.0....* gnu/packages/games.scm (odamex): Update to 10.4.0. [inputs]: Add fltk, jsoncpp, libpng, miniupnpc, portmidi and protobuf. Change-Id: I371d18498640e15a7bfae527fea12d9432368f50 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> David Pflug
2024-02-10gnu: sameboy: Update to 0.16.2....* gnu/packages/emulators.scm (sameboy): Update to 0.16.2. Change-Id: I86a31cfca9e69d63d3cb6a13d5db88a6b1abe2a8 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Felix Gruber
2024-02-10gnu: ocrad: Update to 0.29...* gnu/packages/ocr.scm (ocrad): Update to 0.29 Change-Id: I9069a4b20016ed38961cd2606a841933b3151e1a Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Andy Tai
2024-02-10gnu: sssd: Update to 2.9.4....* gnu/packages/sssd.scm (sssd): Update to 2.9.4. Change-Id: Ib5a4e03c4c732d362f8095aeb72509cfd6e7c4a1 Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Timotej Lazar
2024-02-10gnu: r-desctools: Update to 0.99.54....* gnu/packages/statistics.scm (r-desctools): Update to 0.99.54. Change-Id: Ic2f1a625021f11f83bacae0454c50e52551e01cf Ricardo Wurmus
2024-02-10gnu: r-tclust: Update to 1.5-6....* gnu/packages/statistics.scm (r-tclust): Update to 1.5-6. Change-Id: Ic456aba29495c670f9a9be8ae9257017730cf1f2 Ricardo Wurmus
2024-02-10gnu: r-robust: Update to 0.7-4....* gnu/packages/statistics.scm (r-robust): Update to 0.7-4. Change-Id: I038772a5d83c9a0e40a4aa24a8bd8cabc3ff623a Ricardo Wurmus
2024-02-10gnu: r-ggthemes: Update to 5.1.0....* gnu/packages/statistics.scm (r-ggthemes): Update to 5.1.0. Change-Id: I8eb945aea1aeba6d61d9d03497ba1e3095caa9dd Ricardo Wurmus
2024-02-10gnu: r-gplots: Update to 3.1.3.1....* gnu/packages/statistics.scm (r-gplots): Update to 3.1.3.1. Change-Id: Ie8a457837a9f59a98507921c559ff981e876f64a Ricardo Wurmus
2024-02-10gnu: r-rcpparmadillo: Update to 0.12.8.0.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.12.8.0.0. Change-Id: I42e39e8c8c25d068378f2a8e8743b4b77c61cdc4 Ricardo Wurmus
2024-02-10gnu: r-seqminer: Update to 9.4....* gnu/packages/cran.scm (r-seqminer): Update to 9.4. Change-Id: I38a72f26363440e79aff6c4262c5d856d7ed96c9 Ricardo Wurmus
2024-02-10gnu: r-spatstat-linnet: Update to 3.1-4....* gnu/packages/cran.scm (r-spatstat-linnet): Update to 3.1-4. Change-Id: I60eff13181a3f7b65c3904f185f22820b33fec4d Ricardo Wurmus
2024-02-10gnu: r-spatstat-model: Update to 3.2-10....* gnu/packages/cran.scm (r-spatstat-model): Update to 3.2-10. Change-Id: I38663d7ae11711d91d503892b4443086be812ca3 Ricardo Wurmus
2024-02-10gnu: r-hardhat: Update to 1.3.1....* gnu/packages/cran.scm (r-hardhat): Update to 1.3.1. Change-Id: I2e2ee02f48e6b0531caeabb85e1c34535092c3cb Ricardo Wurmus
2024-02-10gnu: r-distributional: Update to 0.4.0....* gnu/packages/cran.scm (r-distributional): Update to 0.4.0. [propagated-inputs]: Remove r-digest, r-farver, r-ggplot2, and r-scales. Change-Id: Ic83e5ba2972dd32b1bbc69aad1e241739ce12480 Ricardo Wurmus
2024-02-10gnu: r-aws: Update to 2.5-5....* gnu/packages/cran.scm (r-aws): Update to 2.5-5. Change-Id: I39f0394bfed327c04c275e1c42d2d47b2cef27fe Ricardo Wurmus
2024-02-10gnu: r-lisreltor: Update to 0.3....* gnu/packages/cran.scm (r-lisreltor): Update to 0.3. Change-Id: I423e7116d80f236c39a3f30d4f9e3717658433a9 Ricardo Wurmus
2024-02-10gnu: r-lim: Update to 1.4.7.1....* gnu/packages/cran.scm (r-lim): Update to 1.4.7.1. Change-Id: Ibe9c04b0f0e7109f9e01f4902f034175da933fb6 Ricardo Wurmus
2024-02-10gnu: r-idpmisc: Update to 1.1.21....* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.21. Change-Id: I5acf372d08a8a7829bd3d2f6e17897234bf0856a Ricardo Wurmus
2024-02-10gnu: r-smpracticals: Update to 1.4-3.1....* gnu/packages/cran.scm (r-smpracticals): Update to 1.4-3.1. Change-Id: I200db8be3842c8716a3e5583a43b975294e5e03e Ricardo Wurmus
2024-02-10gnu: r-parameters: Update to 0.21.5....* gnu/packages/cran.scm (r-parameters): Update to 0.21.5. Change-Id: If0de907fd0f0004468f3dcb4f4f5ca438a380c56 Ricardo Wurmus
2024-02-10gnu: r-plot3d: Update to 1.4.1....* gnu/packages/cran.scm (r-plot3d): Update to 1.4.1. Change-Id: I5734b726f80b5ac06b217d0bcee90f1584823bfc Ricardo Wurmus
2024-02-10gnu: r-ggnewscale: Update to 0.4.10....* gnu/packages/cran.scm (r-ggnewscale): Update to 0.4.10. Change-Id: Icb68ac0a8ee0cf780b077869e9c6adbf53a2bb39 Ricardo Wurmus
2024-02-10gnu: r-ggvis: Update to 0.4.9....* gnu/packages/cran.scm (r-ggvis): Update to 0.4.9. Change-Id: Iacdffbfb6ca558a3e1979bf63e76c04909924310 Ricardo Wurmus
2024-02-10gnu: r-haplo-stats: Update to 1.9.5.1....* gnu/packages/cran.scm (r-haplo-stats): Update to 1.9.5.1. Change-Id: I9b0111e471f88766ccc2096cb65720f9716ad1a2 Ricardo Wurmus
2024-02-10gnu: r-spdep: Update to 1.3-3....* gnu/packages/cran.scm (r-spdep): Update to 1.3-3. Change-Id: Iab08e69f7a8bb5163a8dc5bd042ea19709316563 Ricardo Wurmus
2024-02-10gnu: r-lemon: Update to 0.4.9....* gnu/packages/cran.scm (r-lemon): Update to 0.4.9. Change-Id: I31e9a3ae0e1e40bbf7806f891b26a7be13d1d346 Ricardo Wurmus
2024-02-10gnu: r-remacor: Update to 0.0.18....* gnu/packages/cran.scm (r-remacor): Update to 0.0.18. Change-Id: I20b0441a601a03cbfe3fa99382913491c73b267f Ricardo Wurmus
2024-02-10gnu: r-cobs: Update to 1.3-7....* gnu/packages/cran.scm (r-cobs): Update to 1.3-7. Change-Id: I2f3cdef942b6875e5072b7802871308cff78b090 Ricardo Wurmus
2024-02-10gnu: r-rnaturalearthdata: Update to 1.0.0....* gnu/packages/cran.scm (r-rnaturalearthdata): Update to 1.0.0. [propagated-inputs]: Remove r-sp. Change-Id: Ib649f9242b14aa2c167ce480c768d2e4a1f98a88 Ricardo Wurmus