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2022-07-02gnu: r-sandwich: Update to 3.0-2....* gnu/packages/cran.scm (r-sandwich): Update to 3.0-2. [source]: Add snippet to remove generated files. Ricardo Wurmus
2022-07-02gnu: r-raster: Update to 3.5-21....* gnu/packages/cran.scm (r-raster): Update to 3.5-21. Ricardo Wurmus
2022-07-02gnu: r-itsadug: Update to 2.4.1....* gnu/packages/cran.scm (r-itsadug): Update to 2.4.1. Ricardo Wurmus
2022-07-02gnu: r-tinytex: Update to 0.40....* gnu/packages/cran.scm (r-tinytex): Update to 0.40. Ricardo Wurmus
2022-07-02gnu: r-qap: Update to 0.1-2....* gnu/packages/cran.scm (r-qap): Update to 0.1-2. Ricardo Wurmus
2022-07-02gnu: r-processx: Update to 3.6.1....* gnu/packages/cran.scm (r-processx): Update to 3.6.1. Ricardo Wurmus
2022-07-02gnu: r-broom: Update to 1.0.0....* gnu/packages/cran.scm (r-broom): Update to 1.0.0. Ricardo Wurmus
2022-07-02gnu: r-idr: Update to 1.3....* gnu/packages/cran.scm (r-idr): Update to 1.3. Ricardo Wurmus
2022-07-02gnu: r-pkgload: Update to 1.3.0....* gnu/packages/cran.scm (r-pkgload): Update to 1.3.0. [propagated-inputs]: Remove r-rstudioapi; add r-fs and r-glue. Ricardo Wurmus
2022-07-02gnu: r-ps: Update to 1.7.1....* gnu/packages/cran.scm (r-ps): Update to 1.7.1. Ricardo Wurmus
2022-07-02gnu: r-partykit: Update to 1.2-16....* gnu/packages/cran.scm (r-partykit): Update to 1.2-16. Ricardo Wurmus
2022-07-02gnu: r-reordercluster: Update to 2.0....* gnu/packages/cran.scm (r-reordercluster): Update to 2.0. [propagated-inputs]: Add r-gtools. Ricardo Wurmus
2022-07-02gnu: r-ggpmisc: Update to 0.4.7....* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.7. Ricardo Wurmus
2022-07-02gnu: r-restfulr: Update to 0.0.15....* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15. Ricardo Wurmus
2022-07-02gnu: ocaml-migrate-parsetree: Update to 2.4.0....* gnu/package/ocaml.scm (ocaml-migrate-parsetree): Update to 2.4.0. Julien Lepiller
2022-07-02gnu: ocaml-lwt-react: Update to 1.2.0....* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.2.0. Julien Lepiller
2022-07-02gnu: ocaml-lwt: Update to 5.6.1....* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.6.1. Julien Lepiller
2022-07-02gnu: dune: Update to 3.3.1....* gnu/packages/ocaml.scm (dune): Update to 3.3.1. Julien Lepiller
2022-07-02gnu: ocaml-camlp-streams: Update to 5.0.1....* gnu/packages/ocaml.scm (ocaml-camlp-streams): Update to 5.0.1. Julien Lepiller
2022-07-02gnu: Add ruby-blather....* gnu/packages/ruby.scm (ruby-blather): New variable. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name> Stephen Paul Weber
2022-07-02gnu: Add ruby-niceogiri....* gnu/packages/ruby.scm (ruby-niceogiri): New variable. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name> Stephen Paul Weber
2022-07-02gnu: gdk-pixbuf: Add removal hint for libx11....* gnu/packages/gtk.scm (gdk-pixbuf)[propagated-inputs]: Add hint to remove libx11 on core-updates. Liliana Marie Prikler
2022-07-02gnu: Add gdk-pixbuf-xlib....This was part of gtk-pixbuf before but was split into its own library in version 2.42.0: https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/tags/2.42.0 * gnu/packages/gtk.scm (gtk-pixbuf-xlib): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Tomasz Jeneralczyk
2022-07-02gnu: dino: Run tests....* gnu/packages/messaging.scm (dino)[arguments]<#:tests?>: Drop. <#:configure-flags>: Add “-DBUILD_TESTS=true”. <#:phases>: Replace ‘check’ with manual invocations of the test binaries. Liliana Marie Prikler
2022-07-02gnu: dino: Use new package style....* gnu/packages/messaging.scm (dino)[arguments]: Convert to list of G-Expressions. [native-inputs, inputs]: Drop labels. Liliana Marie Prikler
2022-07-02gnu: Add kaidan....* gnu/packages/messaging.scm (kaidan): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Raghav Gururajan
2022-07-02gnu: bitmask: Update to 0.21.11....* gnu/packages/vpn.scm (bitmask)[version]: Update to 0.21.11. [inputs]: Add qtsvg. Raghav Gururajan
2022-07-02gnu: sbcl-nhooks: Update to 1.1.1....* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.1.1. Pierre Neidhardt
2022-07-02gnu: gdm: Use regular check....* gnu/packages/gnome.scm (gdm)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: iodine: Use regular check....* gnu/packages/networking.scm (iodine)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: libsbml: Use regular check....* gnu/packages/bioinformatics.scm (libsbml)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: edi: Use regular check....* gnu/packages/enlightenment.scm (edi)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: burp: Use regular check....* gnu/packages/backup.scm (burp)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: libsigrokdecode: Use regular check....* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: recutils: Use regular check....* gnu/packages/databases.scm (recutils)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Thiago Jung Bauermann
2022-07-02gnu: curl: Skip failing test on x86-32....* gnu/packages/curl.scm (curl-7.84.0)[arguments]<#:phases>: When running on x86-32, add a phase to skip test 3026 “curl_global_init thread-safety”. Liliana Marie Prikler
2022-07-02gnu: ibus-anthy: Modernize arguments....* gnu/packages/ibus.scm (ibus-anthy)[arguments]: Convert to list of G-Expressions. Liliana Marie Prikler
2022-07-02gnu: ibus-anthy: Archaize wrapper....This is a follow-up to 39b118776bbbaed049f8bcafa27bde30d9d0b2f6, which applied the wrong modernization metaphors. For more information, see <https://issues.guix.gnu.org/52576#16>. * gnu/packages/ibus.scm (ibus-anthy)[#:phases]<wrap-programs>: Refer to outputs by assoc-ref. Liliana Marie Prikler
2022-07-01tests: Adjust 'guix graph' test to latest OCaml changes....* tests/graph.scm ("reverse bag DAG"): Adjust to latest OCaml changes by looking at dune/ocaml-camomile/ocaml-utop. Ludovic Courtès
2022-07-01profiles: Do not repeat entries in 'manifest' file....Fixes <https://issues.guix.gnu.org/55499>. Reported by Ricardo Wurmus <rekado@elephly.net>. With this change, the manifest file created for: guix install r r-seurat r-cistopic r-monocle3 r-cicero-monocle3 r-assertthat goes from 5.7M to 176K. Likewise, on this profile, wall-clock time of: GUIX_PROFILING=gc guix package -I goes from 0.7s to 0.1s, with heap usage going from 55M to 9M. * guix/profiles.scm (manifest->gexp)[optional]: New procedure. [entry->gexp]: Turn into a monadic procedure. Return a 'repeated' sexp if ENTRY was already visited before. Adjust caller accordingly. Bump manifest version. (sexp->manifest)[sexp->manifest-entry]: Turn into a monadic procedure. Add case for 'repeated' nodes. Add each entry to the current state vhash. Add clause for version 4 manifests. [sexp->manifest-entry/v3]: New procedure, with former 'sexp->manifest-entry' code. * tests/profiles.scm ("deduplication of repeated entries"): New test. * guix/build/profiles.scm (manifest-sexp->inputs+search-paths)[let-fields]: New macro. Use it. Expect version 4. Add clause for 'repeated' nodes. Ludovic Courtès
2022-07-01tests: Augment profile collision test....* tests/profiles.scm ("collision of propagated inputs"): Check the parents of ENTRY1 and ENTRY2. Ludovic Courtès
2022-07-01services: openssh: Listen on IPv6 only when IPv6 is supported....Fixes <https://issues.guix.gnu.org/56327>. Reported by André Batista <nandre@riseup.net>. * gnu/services/ssh.scm (openssh-shepherd-service)[ipv6-support?]: New variable. Use it in 'start' method. Ludovic Courtès
2022-07-01upstream: 'guix refresh -u' no longer stops when upstream info is lacking....Fixes <https://issues.guix.gnu.org/56338>. Starting from 53b9c27aa59bebf955f0aa24fef60a101480ef5c, 'guix refresh -u' would stop upon the first failure to determine upstream releases. This fixes that. * guix/upstream.scm (package-update): Warn rather than update. Ludovic Courtès
2022-07-01gnu: Add luppp....* gnu/packages/music.scm (luppp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sughosha
2022-07-01gnu: Add fabla....* gnu/packages/music.scm (fabla): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sughosha
2022-07-01gnu: sorcer: Update to 1.1.3-1.cc7f6f5....* gnu/packages/music.scm (sorcer): Update to 1.1.3-1.cc7f6f5. [source]: Fetch with git; remove generated C++ file. [native-inputs]: Replace faust with faust-0.9.67. This update fixes the building of the package. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Sughosha
2022-07-01gnu: Add faust-0.9.67....* gnu/packages/audio.scm (faust-0.9.67): New variable. Ricardo Wurmus
2022-07-01gnu: linux-libre 5.4: Update to 5.4.202....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.202. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2022-07-01gnu: linux-libre 5.10: Update to 5.10.127....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.127. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2022-07-01gnu: linux-libre 5.15: Update to 5.15.51....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.51. (linux-libre-5.15-pristine-source): Update hash. Leo Famulari
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