Age | Commit message (Collapse) | Author |
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* guix/store.scm (references/cached): Add call to
'record-cache-lookup!'.
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* gnu/packages/java.scm (openjdk17): Update to 17.0.3.
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* gnu/packages/python-xyz.scm (python-translate-toolkit): Update to
3.6.2.
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* gnu/packages/python-xyz.scm (python-user-agents): Update to 2.2.0.
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* gnu/packages/python-xyz.scm (python-ua-parser): Update to 0.10.0.
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* gnu/packages/web-browsers.scm (lagrange): Update to 1.13.6.
[source]: Adjust snippet to remove another bundled library.
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* gnu/packages/wget.scm (wget): Update to 1.21.3.
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* gnu/packages/mail.scm (mutt): Update to 2.2.5.
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* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220525.
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* gnu/packages/admin.scm (nmap)[arguments]: In custom 'check phase honor
the #:tests? flag.
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* gnu/packages/wget.scm (wgetpaste)[arguments]: Remove trailing #t from
phases.
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* gnu/packages/wget.scm (wgetpaste)[inputs]: Add bash-minimal.
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* gnu/packages/web-browsers.scm (telescope): Update to 0.8.1.
[home-page]: Update to new upstream home-page.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/debian.scm (pbuilder): New variable.
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* gnu/packages/gnome.scm (apostrophe)[inputs]: Replace webkitgtk with
webkitgtk-with-libsoup2.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
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* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: When building for
riscv64-linux add configure-flags and make-flags to ensure linking with
'-latomic'.
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* gnu/packages/bioconductor.scm (r-scmap): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/bioinformatics.scm (pigx-sars-cov-2)[arguments]: Add
'autoreconf phase to patch build system.
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* gnu/packages/bioinformatics.scm (pigx-bsseq)[arguments]: Patch build system
in 'autoreconf phase.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[arguments]: Add autoreconf
step to work around m4 macro bug and missing VERSION file.
[native-inputs]: Add autoconf and automake.
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* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Patch build
system.
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* gnu/packages/cran.scm (r-googlevis): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* guix/scripts/import.scm (guix-import): Use pretty-print-with-comments.
(newline-rewriting-port): Remove procedure.
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Fixes <https://issues.guix.gnu.org/55444>.
Previously shepherd and dbus-daemon would race to start elogind. In
some cases (for instance if one logs in quickly enough on the tty),
dbus-daemon would "win" and start elogind before shepherd has had a
chance to do it. Consequently, shepherd would fail to start elogind and
mark it as stopped and disabled, in turn preventing services that depend
on it such as 'xorg-server' from starting.
* gnu/services/desktop.scm (elogind-dbus-service): Rewrite to refer to a
wrapper that waits for the 'elogind' Shepherd service.
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* gnu/services/herd.scm (wait-for-service): New procedure.
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* gnu/packages/bioconductor.scm (r-msdata): New variable.
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* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
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* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
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* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
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* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
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* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0.
[propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown.
[native-inputs]: Add r-knitr.
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* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
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* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
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* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
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* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
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* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
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* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
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* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
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* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
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* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0.
[propagated-inputs]: Add r-annotationdbi.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
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* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
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* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
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* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
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