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2023-01-09gnu: r-statmod: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
2023-01-09gnu: r-sendmailr: Update to 1.3-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
2023-01-09gnu: r-bien: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-bien): Update to 1.2.6. [propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
2023-01-09gnu: r-rtweet: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0. [propagated-inputs]: Add r-httr2.
2023-01-09gnu: r-mlr3learners: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
2023-01-09gnu: r-qtl: Update to 1.58.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl): Update to 1.58.
2023-01-09gnu: r-tidytext: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
2023-01-09gnu: r-forecast: Update to 8.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.20.
2023-01-09gnu: r-qqconf: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.1.
2023-01-09gnu: r-gkmsvm: Update to 0.82.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
2023-01-09gnu: r-lavaan: Update to 0.6-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
2023-01-09gnu: r-rncl: Update to 0.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
2023-01-09gnu: r-fmsb: Update to 0.7.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
2023-01-09gnu: r-rgl: Update to 0.111.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
2023-01-09gnu: r-ncdf4: Update to 1.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
2023-01-09gnu: r-afex: Update to 1.2-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
2023-01-09gnu: r-raster: Update to 3.6-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
2023-01-09gnu: r-drtmle: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-drtmle): Update to 1.1.2.
2023-01-09gnu: r-netrep: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-netrep): Update to 1.2.6.
2023-01-09gnu: r-precrec: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-precrec): Update to 0.14.1. [propagated-inputs]: Add r-rlang.
2023-01-09gnu: r-writexl: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-writexl): Update to 1.4.2.
2023-01-09gnu: r-officer: Update to 0.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.5.1. [propagated-inputs]: Add r-openssl.
2023-01-09gnu: r-billboarder: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-billboarder): Update to 0.4.0. [native-inputs]: Update js-billboard to 3.6.3.
2023-01-09gnu: r-reticulate: Update to 1.27.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): Update to 1.27.
2023-01-09gnu: r-rastervis: Update to 0.51.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-rastervis): Update to 0.51.5.
2023-01-09gnu: r-heatmaply: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply): Update to 1.4.2.
2023-01-09gnu: r-expm: Update to 0.999-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-expm): Update to 0.999-7.
2023-01-09gnu: r-zlog: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-zlog): Update to 1.0.2.
2023-01-09gnu: r-seriation: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-seriation): Update to 1.4.1.
2023-01-09gnu: r-mitml: Update to 0.4-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-mitml): Update to 0.4-4.
2023-01-09gnu: r-timedate: Update to 4022.108.Ricardo Wurmus
* gnu/packages/cran.scm (r-timedate): Update to 4022.108.
2023-01-09gnu: r-lava: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-lava): Update to 1.7.1.
2023-01-09gnu: r-rstpm2: Update to 1.5.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.9.
2023-01-09gnu: r-htmlwidgets: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-htmlwidgets): Update to 1.6.1.
2023-01-09gnu: r-collections: Update to 0.3.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-collections): Update to 0.3.7.
2023-01-09gnu: Add r-httr2.Ricardo Wurmus
* gnu/packages/cran.scm (r-httr2): New variable.
2023-01-09news: Add 'de' translation.Florian Pelz
* etc/news.scm: Add German translation of entry about linux-libre 4.9 removal.
2023-01-09gnu: LLVM, Clang, libomp, lld: Update to 15.0.6.Greg Hogan
* gnu/packages/llvm.scm (llvm-15, clang-15, libomp-15, lld-15): Update to 15.0.6. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09gnu: Add minetest-mobs-monster.Vivien Kraus
* gnu/packages/minetest.scm (minetest-mobs-monster): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09gnu: Add minetest-wielded-light.Vivien Kraus
* gnu/packages/minetest.scm (minetest-wielded-light): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-09read-print: Do not use extended notation when printing '1+', '1-', etc.Ludovic Courtès
* guix/read-print.scm (%special-non-extended-symbols): New variable. (symbol->display-string): New procedure. (pretty-print-with-comments): Use it in lieu of 'string->symbol'. * tests/read-print.scm: Add test.
2023-01-09daemon: Improve error message for wrong hash sizes.Ludovic Courtès
* nix/libutil/hash.cc (parseHash): Show the hash algorithm name and expected size in the error message. * tests/derivations.scm ("fixed-output derivation, invalid hash size"): New test.
2023-01-09derivations: 'read-derivation' correctly handles case with empty hash.Ludovic Courtès
Reported by Stephen Paul Weber <singpolyma@singpolyma.net> at <https://lists.gnu.org/archive/html/guix-devel/2023-01/msg00035.html>. * guix/derivations.scm (read-derivation)[outputs->alist]: Treat the empty hash case as non-fixed-output whether or not the hash algorithm is the empty string, and preserve the hash algorithm in <derivation-output>. * tests/derivations.scm ("'download' built-in builder, no fixed-output hash") ("fixed-output-derivation?, no hash", "read-derivation with hash = #f"): New tests.
2023-01-09substitute: Parse '_NIX_OPTIONS' once.Ludovic Courtès
* guix/scripts/substitute.scm (find-daemon-option): Arrange to call 'daemon-options' only once.
2023-01-09doc: cookbook: Add "Installing Guix on a Cluster" chapter.Ludovic Courtès
This is derived from the article at <https://hpc.guix.info/blog/2017/11/installing-guix-on-a-cluster/>, with clarifications and updates. * doc/guix-cookbook.texi (Installing Guix on a Cluster): New chapter.
2023-01-09services: base: Add environment support to guix-configuration.Mathieu Othacehe
* gnu/services/base.scm (<guix-configuration>)[extra-env]: New field. (guix-shepherd-service): Honor it. * doc/guix.texi (Base Services): Document it.
2023-01-09gnu: Add r-gg3d.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gg3d): New variable.
2023-01-09home: environment-variables: Fix escaping.Andrew Tropin
* gnu/home/services.scm (environment-variable-shell-definitions): Fix escaping. * tests/guix-home.sh: Add STRING_WITH_ESCAPES environment variable and test its value. Reported-by: elevnkb
2023-01-09home: environment-variables: Return support for file-likes and gexps.Andrew Tropin
* gnu/home/services.scm (environment-variable-shell-definitions): Add support for file-likes and gexps. * tests/guix-home.sh: Add SHELL environment variable and test its value. Add BUILDHOSTTIME environment variable.
2023-01-09gnu: ikiwiki: Remove input labels.Marius Bakke
* gnu/packages/web.scm (ikiwiki)[native-inputs, inputs]: Remove labels.
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