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2016-03-05grafts: Memoize intermediate results in 'cumulative-grafts'.•••The time for: guix build inkscape -n --no-substitutes goes down by 30% (in the presence of 3 replacements among all the packages.) * guix/grafts.scm (cumulative-grafts): Turn into a monadic procedure in %STATE-MONAD. Use the current state as a derivation-to-graft cache. (graft-derivation): Call 'cumulative-grafts' within 'run-with-state'. Ludovic Courtès
2016-03-05packages: The result of 'bag-grafts' does not contain duplicates.•••* guix/packages.scm (bag-grafts): Add call to 'delete-duplicates'. Ludovic Courtès
2016-03-05grafts: Use dependency information from substitutes when possible.•••This avoids starting derivation builds just for the sake of knowing the references of their outputs, thereby restoring the expected behavior of --dry-run when substitutes are available. * guix/grafts.scm (non-self-references): Remove 'store' parameter, and add 'references'. Use it. Update caller. (references-oracle): New variable. (cumulative-grafts): Add 'references' parameter and use it. Update callers. (graft-derivation): Remove 'build-derivations' call. Add call to 'references-oracle'. Ludovic Courtès
2016-03-05store: Add 'references/substitutes'.•••* guix/store.scm (references/substitutes): New procedure. * tests/store.scm ("references/substitutes missing reference info") ("references/substitutes with substitute info"): New tests. Ludovic Courtès
2016-03-05tests: Narinfos can specify an non-empty reference list.•••* guix/tests.scm (derivation-narinfo): Add #:references and honor it. (call-with-derivation-narinfo, call-with-derivation-substitute): Likewise. (with-derivation-narinfo, with-derivation-substitute): Add 'references' keyword. Ludovic Courtès
2016-03-05guix build: Set the build options early.•••This fixes a bug whereby, with grafts leading to builds very early, build options such as --substitute-urls would not be taken into account yet. Reported by Andreas Enge <andreas@enge.fr>. * guix/scripts/build.scm (guix-build): Move 'opts' to the beginning. Use 'with-store' instead of 'open-connection'. Call 'set-build-options-from-command-line' right after 'with-store'. Ludovic Courtès
2016-03-04gnu: letsencrypt, python-acme: Update to 0.4.2.•••These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.4.2. (python-acme, python2-acme): Update to 0.4.2. Leo Famulari
2016-03-04gnu: python-cryptography, python-cryptography-vectors: Update to 1.2.3.•••These packages should be updated together. * gnu/packages/python.scm (python-cryptography): Update to 1.2.3. (python-cryptography-vectors): Update to 1.2.3. Leo Famulari
2016-03-04doc: Mention syslogd configuration.•••* gnu/services/base.scm (syslog-service): Add xref to Inetutils in the docstring. (%default-syslog.conf): Export. * doc/guix.texi (Base Services): Update accordingly. Ludovic Courtès
2016-03-04lint: cve: Gracefully handle HTTP errors.•••* guix/scripts/lint.scm (current-vulnerabilities*): New procedure. (package-vulnerabilities): Use it. Ludovic Courtès
2016-03-04gnu: gnome: Sync description and synopsis.•••* gnu/packages/gnome.scm (gnome)[synopsis, description]: Use official GNU blurb. Ludovic Courtès
2016-03-04gnu: nano: Update to 2.5.3.•••* gnu/packages/nano.scm (nano): Update to 2.5.3. Ludovic Courtès
2016-03-04gnu: libgit2: Update to 0.23.4.•••* gnu/packages/version-control.scm (libgit2): Update to 0.23.4. Ludovic Courtès
2016-03-04gnu: findnewest: Update to 0.3.•••* gnu/packages/version-control.scm (findnewest): Update to 0.3. Ludovic Courtès
2016-03-04emacs: Use '@' to separate package names and version numbers.•••This is a followup to commit 1b846da8c372bee78851439fd9e72b2499115e5a. * emacs/guix-base.el (guix-package-name-specification): Use "@" instead of "-". * emacs/guix-main.scm (name+version->full-name): Likewise. (package-inputs-names): Use 'make-package-specification' instead of 'package-full-name'. (full-name->name+version): Update the docstring. * emacs/guix-ui-package.el (guix-packages-by-name): Likewise. Alex Kost
2016-03-04emacs: hydra: Use '-' to separate job names and version numbers.•••* emacs/guix-hydra.el (guix-hydra-job-name-specification): New procedure. * emacs/guix-ui-package.el (guix-package-info-insert-systems) (guix-package-list-latest-builds): Use it. Alex Kost
2016-03-03gnu: exim: Update to 4.86.2 [fixes CVE-2016-1531].•••* gnu/packages/mail.scm (exim): Update to 4.86.2. Leo Famulari
2016-03-03gnu: Add byzanz.•••* gnu/packages/gnome.scm (byzanz): New variable. David Thompson
2016-03-03doc: Improve Info categories.•••* doc/guix.texi: Change main category to "System administration". Fix syntax of subnodes. Add entries for 'guix pull' and 'guix gc'. Add "Emacs" category. Ludovic Courtès
2016-03-03build: Use (guix grafts) as needed.•••This is a followup to 7adf9b8. * build-aux/check-final-inputs-self-contained.scm: Use (guix grafts). * build-aux/check-available-binaries.scm: Likewise. Ludovic Courtès
2016-03-03gnu: youtube-dl: Update to 2016.03.01.•••* gnu/packages/video.scm (youtube-dl): Update to 2016.03.01. Efraim Flashner
2016-03-03gnu: mpv: Update to 0.16.0.•••* gnu/packages/video.scm (mpv): Update to 0.16.0. Efraim Flashner
2016-03-03gnu: perl: Replace with patched version [fixes CVE-2016-2381].•••* gnu/packages/patches/perl-CVE-2016-2381.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/perl.scm (perl)[replacement]: New field. (perl-fixed): New variable. * gnu/packages/commencement.scm (perl-boot0)[replacement]: New field. Leo Famulari
2016-03-03gnu: irssi: Support proxy, socks, bot.•••* gnu/packages/irc.scm (irssi)[arguments]: Add configure flags to support proxy, socks and bot. Efraim Flashner
2016-03-03gnu: irssi: Update to 0.8.18.•••* gnu/packages/irc.scm (irssi): Update to 0.8.18. [source]: Update uri. Efraim Flashner
2016-03-03build: Build (guix import github) only when Guile-JSON is available.•••Reported by Justus Winter <justus@gnupg.org>. * Makefile.am (MODULES): Add guix/import/github.scm only when HAVE_GUILE_JSON. Ludovic Courtès
2016-03-03po: Drop removed file 'weechat.scm'.•••Fixes <http://bugs.gnu.org/22888>. weechat has been merged into 'irc.scm' in e288f007. * po/packages/POTFILES.in: Drop removed file 'weechat.scm'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Justus Winter
2016-03-03system: GRUB menu entry says "beta" instead of "alpha"•••* gnu/system.scm (kernel->grub-label): Change "alpha" to "beta'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Petter
2016-03-03system: Add rfkill to '%base-packages'.•••* gnu/system.scm (%base-packages): Add RFKILL. Ludovic Courtès
2016-03-03gnu: python-pysam: Move cython and setuptools to native inputs.•••* gnu/packages/bioinformatics.scm (python-pysam)[inputs]: Move "python-cython" and "python-setuptools" from here... [native-inputs]: ... to here. Ricardo Wurmus
2016-03-03gnu: deeptools: Update to 2.1.1.•••* gnu/packages/bioinformatics.scm (deeptools): Update to 2.1.1. [inputs]: Add "python2-numpydoc" and "python2-pybigwig". Ricardo Wurmus
2016-03-03gnu: deeptools: Change "propagated-inputs" to "inputs".•••* gnu/packages/bioinformatics.scm (deeptools)[propagated-inputs]: Move all inputs from here... [inputs]: ...to here. Ricardo Wurmus
2016-03-03gnu: Add python-pybigwig.•••* gnu/packages/bioinformatics.scm (python-pybigwig, python2-pybigwig): New variables. Ricardo Wurmus
2016-03-03gnu: python-pysam: Update to 0.8.4.•••* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.8.4. Ricardo Wurmus
2016-03-03gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.•••* gnu/packages/python.scm (python-pysam, python2-pysam): Move to... * gnu/packages/bioinformatics.scm (python-pysam, python2-pysam): ...here. Ricardo Wurmus
2016-03-03lint: derivation: Disable grafts, but check replacements.•••* guix/scripts/lint.scm (check-derivation): Pass #:graft? #f. When 'package-replacement' exists, compute its derivation. Ludovic Courtès
2016-03-02gnu: Add procmail.••• * gnu/packages/patches/procmail-ambiguous-getline-debian.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/mail.scm (procmail): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Lukas Gradl
2016-03-03guix build: -S returns the replacement's source.•••Reported by Mark H Weaver. * guix/scripts/build.scm (options->derivations): When SRC and GRAFT? are true, use the source of P's replacement. * tests/guix-build.sh: Add test. Ludovic Courtès
2016-03-03hydra: Completely disable grafting.•••* build-aux/hydra/gnu-system.scm (hydra-jobs): Parameterize '%graft?'. Build package replacements when they are available. Ludovic Courtès
2016-03-03hydra: Improve readability.•••* build-aux/hydra/gnu-system.scm (hydra-jobs): Use 'filter-map' instead of directly 'fold-packages'. Ludovic Courtès
2016-03-02utils: Use '@' for separating package names and version numbers.•••This provides the ability to use numbers in package names. Fixes <http://bugs.gnu.org/19219>. * guix/utils.scm (package-name->name+version): New procedure. * gnu/packages.scm (%find-package): Add a FALLBACK? keyword argument. Use the previous method when no package is found. (specification->package+output, specification->package): Adapt documentation to new syntax. * doc/guix.texi (Invoking guix package, Invoking guix import): Likewise. * guix/ui.scm (package-specification->name+version+output): Likewise. * guix/scripts/import/hackage.scm (show-help): Likewise. * tests/guix-build.sh: Adapt to new syntax. * tests/guix-lint.sh: Likewise. * tests/guix-package.sh: Likewise. * tests/ui.scm ("package-specification->name+version+output"): Likewise. * tests/utils.scm ("package-name->name+version"): Likewise. * NEWS: Mention new syntax. Mathieu Lirzin
2016-03-02packages: Factorize package specification search.•••* gnu/packages.scm (%find-package): New procedure. (specification->package, specification->package+output): Use it. Mathieu Lirzin
2016-03-02gnu: icecat: Update bundled graphite2 to 1.3.6 [unspecified security fixes].•••* gnu/packages/patches/icecat-update-graphite2-pt2.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch. Mark H Weaver
2016-03-02gnu: nss: Update to 3.21.1.•••* gnu/packages/gnuzilla.scm (nss): Update to 3.21.1. Mark H Weaver
2016-03-02gnu: graphite2: Replace with 1.3.6 [unspecified security fixes].•••See <https://bodhi.fedoraproject.org/updates/FEDORA-2016-dec1faadc5> * gnu/packages/fontutils.scm (graphite2)[replacement]: New field. (graphite2-1.3.6): New variable. Mark H Weaver
2016-03-02gnu: Add password-store.•••* gnu/packages/password-utils.scm (password-store): New variable. Co-authored-by: Andreas Enge <andreas@enge.fr> Co-authored-by: Leo Famulari <leo@famulari.name> Jessica Tallon
2016-03-02gnu: Add cppcheck.•••* gnu/packages/check.scm (cppcheck): New variable. Roel Janssen
2016-03-02tests: Disable grafts by default.•••Fixes <http://bugs.gnu.org/22872>. Reported by myglc2 <myglc2@gmail.com>. * test-env.in: Define and export 'GUIX_BUILD_OPTIONS'. * tests/guix-build.sh: When setting 'GUIX_BUILD_OPTIONS', make sure it contains '--no-grafts'. * tests/guix-package.sh: Likewise. * tests/guix-daemon.sh: Add (%graft? #f) in Scheme snippets. Ludovic Courtès
2016-03-02graph: Ignore 'GUIX_BUILD_OPTIONS'.•••Previously 'GUIX_BUILD_OPTIONS' would be honored, but 'guix graph' does not support the common build options. * guix/scripts/graph.scm (guix-graph): Use 'args-fold*' instead of 'parse-command-line'. Ludovic Courtès
2016-03-02guix build: Move '--no-grafts' to the common build options.•••* guix/scripts/build.scm (%options): Move --no-grafts to... (%standard-build-options): ... here. (show-help, show-build-options-help): Adjust accordingly. * guix/scripts/archive.scm (%default-options): Add 'graft?'. (guix-archive): Parametrize '%graft?'. * guix/scripts/environment.scm (%default-options): Add 'graft?'. (guix-environment): Parametrize '%graft?'. * guix/scripts/package.scm (%default-options): Add 'graft?'. (guix-package): Parametrize '%graft?'. * guix/scripts/system.scm (%default-options): Add 'graft?'. (guix-system): Parametrize 'graft?'. * doc/guix.texi (Additional Build Options): Move --no-grafts to... (Common Build Options): ... here. Ludovic Courtès