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2018-12-05gnu: mash: Use C++ 14....I'm looking to upgrade capnproto, and mash fails to build with 0.7. Therefore, tweak the compilation to allow it to build with 0.7. The package also builds with the current version of capnproto. I got the idea of changing the c++ version from here [1]. 1: https://github.com/marbl/Mash/issues/98 * gnu/packages/bioinformatics.scm (mash)[arguments]: Add new use-c++14 phase. Christopher Baines
2018-12-05gnu: Syncthing: Update to 0.14.54....* gnu/packages/syncthing.scm (syncthing): Update to 0.14.54. Leo Famulari
2018-12-05gnu: filezilla: Update to 3.39.0....* gnu/packages/ftp.scm (filezilla): Update to 3.39.0. Rene
2018-12-05gnu: libfilezilla: Update to 0.15.1....* gnu/packages/ftp.scm (libfilezilla): Update to 0.15.1. [inputs]: Add nettle. Rene
2018-12-05gnu: balsa: Update to 2.5.6....* gnu/packages/mail.scm (balsa): Update to 2.5.6. [source]: Update URI. Rene
2018-12-05gnu: pdfgrep: Update to 2.1.2....* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.2. Rene
2018-12-05doc: Fix typo... * doc/guix.texi (Invoking guix system): Fix typo. Signed-off-by: Leo Famulari <leo@famulari.name> Laura Lazzati
2018-12-05gnu: eyeD3: Update to 0.8.8....* gnu/packages/mp3.scm (eyed3): Update to 0.8.8. Leo Famulari
2018-12-05gnu: guix: Update to c845323.Ludovic Courtès
2018-12-05gnu: guix: Update to 0.16.0.Ludovic Courtès
2018-12-05guix-install.sh: Use the "ci.guix.info.pub" file name for clarity....* etc/guix-install.sh (sys_authorize_build_farms): Use the "ci.guix.info.pub" file name rather "berlin.guixsd.org.pub". Ludovic Courtès
2018-12-05services: guix-daemon: Fix authorization of multiple keys....Previously, the 'unless (file-exists? "/etc/guix/acl")' guard would mean that only the first key in the list would get registered since were were generating one registration snippet per key. This fixes that. * gnu/services/base.scm (hydra-key-authorization): Change to be a 'for-each' loop iterating on #$KEYS. Ludovic Courtès
2018-12-05gnu: beets: Make it compatible with Python 3.7....* gnu/packages/music.scm (beets)[arguments]<#:phases> [make-python3.7-compatible]: New phase. Danny Milosavljevic
2018-12-05gnu: khal: Disable another test....Normally we shouldn't disable tests just because they fail. However, since the recent glibc update, it's not possible to keep using an old khal, because khal requires locales to be set up properly. * gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test. Leo Famulari
2018-12-05gnu: sbcl-stumpwm: Drop ECL lisp support and rename to 'stumpwm'....StumpWM version 1.0.0 was the last version to support lisps other than SBCL. This patch renames the current version of Stumpwm to simply 'stumpwm' instead of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained 'ecl-stumpwm' package. * gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'. [name]: Rename to 'stumpwm'. [arguments]: Set '#:asd-system-name' to 'stumpwm'. [properties]: Replace ecl-variant with cl-source-variant. (ecl-stumpwm): Remove variable. (cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt. (sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'. [name]: Rename to 'stumpwm-with-slynk'. [inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Pierre Langlois
2018-12-04gnu: go-github-com-client-golang-prometheus: Update to 0.9.1-0.7e9098b....* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus): Update to 0.9.1-0.7e9098b. [arguments]: Skip the test suite. Leo Famulari
2018-12-04gnu: go-github-com-syncthing-notify: Update to 0.0.0-3.116c45b....* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b. Leo Famulari
2018-12-04gnu: Syncthing: Update to 0.14.53....* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53. [source]: Use bundled libraries. [inputs]: Remove field. [arguments]: Simplify the 'build' phase. Leo Famulari
2018-12-05gnu: Add python-xmltodict....* gnu/packages/xml.scm (python-xmltodict): New variable. Oleg Pykhalov
2018-12-05gnu: sbcl-next: Update to 1.1.0....* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0. Pierre Neidhardt
2018-12-05gnu: next-gtk-webkit: Update to 1.1.0....* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0. Pierre Neidhardt
2018-12-05Update NEWS.Ludovic Courtès
2018-12-05maint: update-NEWS: Don't produce full package lists....The lists of new and upgraded packages in 'NEWS' had become way too long and redundant with what 'guix pull' reports. * build-aux/update-NEWS.scm (write-packages-added): Don't print ADDED. (write-packages-updates)[important, table, latest, noteworthy]: New variables. Print NOTEWORTHY rather than all of UPGRADED. (main): Print PREVIOUS-VERSION and NEW-VERSION. Ludovic Courtès
2018-12-05Update NEWS.Ludovic Courtès
2018-12-05doc: Update "Limitations"....* doc/guix.texi (Limitations): Update package count. Ludovic Courtès
2018-12-05gnu: quilt: Use shorter file names for patches....We were reaching the 99-character limit of POSIX tar. * gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch: Rename to... * gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this. * gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch: Rename to... * gnu/packages/patches/quilt-getopt-second-separator.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/patchutils.scm (quilt)[source](patches): Likewise. Ludovic Courtès
2018-12-04gnu: mongo-tools: Fix build....I guess this broke when upgrading go. I did try upgrading to the later patch and minor releases, but they had similar problems, so lets upgrade separately. * gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase. Christopher Baines
2018-12-04gnu: mbedtls-apache: Update to 2.14.1 [fixes CVE-2018-19608]....* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1. Marius Bakke
2018-12-04gnu: samba.scm: Sort module imports....* gnu/packages/samba.scm (gnu): Sort imports. Marius Bakke
2018-12-04gnu: ldb: Update to 1.4.3....* gnu/packages/samba.scm (ldb): Update to 1.4.3. [inputs]: Add LMDB. Marius Bakke
2018-12-04gnu: samba: Update to 4.9.3....* gnu/packages/samba.scm (samba): Update to 4.9.3. [inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB. Marius Bakke
2018-12-04gnu: re2: Update to 2018-12-01....* gnu/packages/regex.scm (re2): Update to 2018-12-01. Marius Bakke
2018-12-04gnu: re2: Download sources from git....* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH. Marius Bakke
2018-12-04gnu: python-django: Update to 1.11.17....* gnu/packages/django.scm (python-django): Update to 1.11.17. Marius Bakke
2018-12-04gnu: go-gopkg.in-tomb.v2: Fix build....Looks like this test isn't compiling with newer versions of go, so fix it to get the package building again. * gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new patch-source phase. Christopher Baines
2018-12-04tests: Increase root partitions size to 1.2G....The system closure has grown slightly above 1GiB so adjust accordingly. * gnu/tests/install.scm (%simple-installation-script): Increase vdb2 size of 1.2G, (%extlinux-gpt-installation-script); ditto (%simple-installation-script-for-/dev/vda): ditto, (%separate-store-installation-script): ditto for vdb3, (%encrypted-root-installation-script): ditto. Ludovic Courtès
2018-12-04gnu: Add apertium....* gnu/packages/dictionaries.scm (apertium): New variable. Arun Isaac
2018-12-04gnu: Add lttoolbox....* gnu/packages/dictionaries.scm (lttoolbox): New variable. Arun Isaac
2018-12-04gnu: dictionaries: Use license prefix....* gnu/packages/dictionaries.scm: Import (guix licenses) with license: prefix. Fix all license fields. Arun Isaac
2018-12-04gnu: pigx-rnaseq: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5. [inputs]: Replace snakemake-4 with snakemake. Ricardo Wurmus
2018-12-04doc: Update substitute server....Fixes an accidental revert in commit 0a5fa004f7f21dc3e01747b8e94fbb21e056e4ca. * doc/guix.texi (SUBSTITUTE-SERVER): Really change to ci.guix.info. Ludovic Courtès
2018-12-04gnu: pari-gp: Update to 2.11.1....* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1. Andreas Enge
2018-12-04gnu: emacs-irony-mode: Fetch source using git....* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tim Gesthuizen
2018-12-04gnu: enlightenment: Use absolute path to 'edje_cc'....* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In 'set-system-actions', set absolute file name to 'edje_cc'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timo Eisenmann
2018-12-04gnu: fenics: Skip extra demo in 'check' phase....* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2018-12-04gnu: petsc-openmpi: Configure with support for HYPRE preconditioner....* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul Garlick
2018-12-04grafts: Mark as non substitutable....* guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to 'build-expression->derivation'. Ludovic Courtès
2018-12-04refresh: '--list-dependents' ignores deprecated packages....* guix/scripts/refresh.scm (all-packages): Filter out deprecated packages. Ludovic Courtès
2018-12-04build: Default to https://ci.guix.info for substitutes....* config-daemon.ac (guix_substitute_urls): Always default to "https://ci.guix.info". * doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info. * guix/scripts/build.scm (%default-log-urls): Likewise. * guix/scripts/substitute.scm (%default-substitute-urls): Likewise. * guix/store.scm (%default-substitute-urls): Likewise. Ludovic Courtès
2018-12-04Remove most references to hydra.gnu.org....* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org in comment. * build-aux/check-available-binaries.scm: Likewise. * build-aux/check-final-inputs-self-contained.scm: Likewise. * doc/guix.texi (SUBSTITUTE-SERVER): New variable. Use it throughout instead of "mirror.hydra.gnu.org". * doc/contributing.texi (Submitting Patches): Likewise. * gnu/services/base.scm (hydra-key-authorization) (guix-activation): Remove mentions of "hydra.gnu.org" in comments and messages. * gnu/system/install.scm (%installation-services): Likewise. * guix/scripts/size.scm (guix-size): Likewise. Ludovic Courtès