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2018-12-05gnu: mash: Use C++ 14.Christopher Baines
I'm looking to upgrade capnproto, and mash fails to build with 0.7. Therefore, tweak the compilation to allow it to build with 0.7. The package also builds with the current version of capnproto. I got the idea of changing the c++ version from here [1]. 1: https://github.com/marbl/Mash/issues/98 * gnu/packages/bioinformatics.scm (mash)[arguments]: Add new use-c++14 phase.
2018-12-05gnu: Syncthing: Update to 0.14.54.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.54.
2018-12-05gnu: filezilla: Update to 3.39.0.Rene
* gnu/packages/ftp.scm (filezilla): Update to 3.39.0.
2018-12-05gnu: libfilezilla: Update to 0.15.1.Rene
* gnu/packages/ftp.scm (libfilezilla): Update to 0.15.1. [inputs]: Add nettle.
2018-12-05gnu: balsa: Update to 2.5.6.Rene
* gnu/packages/mail.scm (balsa): Update to 2.5.6. [source]: Update URI.
2018-12-05gnu: pdfgrep: Update to 2.1.2.Rene
* gnu/packages/pdf.scm (pdfgrep): Update to 2.1.2.
2018-12-05doc: Fix typoLaura Lazzati
* doc/guix.texi (Invoking guix system): Fix typo. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-12-05gnu: eyeD3: Update to 0.8.8.Leo Famulari
* gnu/packages/mp3.scm (eyed3): Update to 0.8.8.
2018-12-05gnu: guix: Update to c845323.Ludovic Courtès
2018-12-05gnu: guix: Update to 0.16.0.Ludovic Courtès
2018-12-05guix-install.sh: Use the "ci.guix.info.pub" file name for clarity.Ludovic Courtès
* etc/guix-install.sh (sys_authorize_build_farms): Use the "ci.guix.info.pub" file name rather "berlin.guixsd.org.pub".
2018-12-05services: guix-daemon: Fix authorization of multiple keys.Ludovic Courtès
Previously, the 'unless (file-exists? "/etc/guix/acl")' guard would mean that only the first key in the list would get registered since were were generating one registration snippet per key. This fixes that. * gnu/services/base.scm (hydra-key-authorization): Change to be a 'for-each' loop iterating on #$KEYS.
2018-12-05gnu: beets: Make it compatible with Python 3.7.Danny Milosavljevic
* gnu/packages/music.scm (beets)[arguments]<#:phases> [make-python3.7-compatible]: New phase.
2018-12-05gnu: khal: Disable another test.Leo Famulari
Normally we shouldn't disable tests just because they fail. However, since the recent glibc update, it's not possible to keep using an old khal, because khal requires locales to be set up properly. * gnu/packages/calendar.scm (khal)[arguments]: Disable a failing test.
2018-12-05gnu: sbcl-stumpwm: Drop ECL lisp support and rename to 'stumpwm'.Pierre Langlois
StumpWM version 1.0.0 was the last version to support lisps other than SBCL. This patch renames the current version of Stumpwm to simply 'stumpwm' instead of 'sbcl-stumpwm' since it's redundant, and removes the unmaintained 'ecl-stumpwm' package. * gnu/packages/lisp.scm (sbcl-stumpwm): Deprecate in favor of 'stumpwm'. [name]: Rename to 'stumpwm'. [arguments]: Set '#:asd-system-name' to 'stumpwm'. [properties]: Replace ecl-variant with cl-source-variant. (ecl-stumpwm): Remove variable. (cl-stumpwm): Replace 'sbcl-stumpwm' with 'stumpwm' and adapt. (sbcl-stumpwm+slynk): Deprecate in favor of 'stumpwm+slynk'. [name]: Rename to 'stumpwm-with-slynk'. [inherit, inputs, arguments]: Replace 'sbcl-stumpwm' with 'stumpwm'. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2018-12-04gnu: go-github-com-client-golang-prometheus: Update to 0.9.1-0.7e9098b.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-client-golang-prometheus): Update to 0.9.1-0.7e9098b. [arguments]: Skip the test suite.
2018-12-04gnu: go-github-com-syncthing-notify: Update to 0.0.0-3.116c45b.Leo Famulari
* gnu/packages/syncthing (go-github-com-syncthing-notify): Update to 0.0.0-3.116c45b.
2018-12-04gnu: Syncthing: Update to 0.14.53.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.53. [source]: Use bundled libraries. [inputs]: Remove field. [arguments]: Simplify the 'build' phase.
2018-12-05gnu: Add python-xmltodict.Oleg Pykhalov
* gnu/packages/xml.scm (python-xmltodict): New variable.
2018-12-05gnu: sbcl-next: Update to 1.1.0.Pierre Neidhardt
* gnu/packages/web-browsers.scm (sbcl-next): Update to 1.1.0.
2018-12-05gnu: next-gtk-webkit: Update to 1.1.0.Pierre Neidhardt
* gnu/packages/web-browsers.scm (next-gtk-webkit): Update to 1.1.0.
2018-12-05Update NEWS.Ludovic Courtès
2018-12-05maint: update-NEWS: Don't produce full package lists.Ludovic Courtès
The lists of new and upgraded packages in 'NEWS' had become way too long and redundant with what 'guix pull' reports. * build-aux/update-NEWS.scm (write-packages-added): Don't print ADDED. (write-packages-updates)[important, table, latest, noteworthy]: New variables. Print NOTEWORTHY rather than all of UPGRADED. (main): Print PREVIOUS-VERSION and NEW-VERSION.
2018-12-05Update NEWS.Ludovic Courtès
2018-12-05doc: Update "Limitations".Ludovic Courtès
* doc/guix.texi (Limitations): Update package count.
2018-12-05gnu: quilt: Use shorter file names for patches.Ludovic Courtès
We were reaching the 99-character limit of POSIX tar. * gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch: Rename to... * gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this. * gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch: Rename to... * gnu/packages/patches/quilt-getopt-second-separator.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-04gnu: mongo-tools: Fix build.Christopher Baines
I guess this broke when upgrading go. I did try upgrading to the later patch and minor releases, but they had similar problems, so lets upgrade separately. * gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-12-04gnu: mbedtls-apache: Update to 2.14.1 [fixes CVE-2018-19608].Marius Bakke
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.1.
2018-12-04gnu: samba.scm: Sort module imports.Marius Bakke
* gnu/packages/samba.scm (gnu): Sort imports.
2018-12-04gnu: ldb: Update to 1.4.3.Marius Bakke
* gnu/packages/samba.scm (ldb): Update to 1.4.3. [inputs]: Add LMDB.
2018-12-04gnu: samba: Update to 4.9.3.Marius Bakke
* gnu/packages/samba.scm (samba): Update to 4.9.3. [inputs]: Add GPGME, JANSSON, LIBARCHIVE and LMDB.
2018-12-04gnu: re2: Update to 2018-12-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2018-12-01.
2018-12-04gnu: re2: Download sources from git.Marius Bakke
* gnu/packages/regex.scm (re2)[source]: Change to GIT-FETCH.
2018-12-04gnu: python-django: Update to 1.11.17.Marius Bakke
* gnu/packages/django.scm (python-django): Update to 1.11.17.
2018-12-04gnu: go-gopkg.in-tomb.v2: Fix build.Christopher Baines
Looks like this test isn't compiling with newer versions of go, so fix it to get the package building again. * gnu/packages/golang.scm (go-gopkg.in-tomb.v2)[arguments]: Add new patch-source phase.
2018-12-04tests: Increase root partitions size to 1.2G.Ludovic Courtès
The system closure has grown slightly above 1GiB so adjust accordingly. * gnu/tests/install.scm (%simple-installation-script): Increase vdb2 size of 1.2G, (%extlinux-gpt-installation-script); ditto (%simple-installation-script-for-/dev/vda): ditto, (%separate-store-installation-script): ditto for vdb3, (%encrypted-root-installation-script): ditto.
2018-12-04gnu: Add apertium.Arun Isaac
* gnu/packages/dictionaries.scm (apertium): New variable.
2018-12-04gnu: Add lttoolbox.Arun Isaac
* gnu/packages/dictionaries.scm (lttoolbox): New variable.
2018-12-04gnu: dictionaries: Use license prefix.Arun Isaac
* gnu/packages/dictionaries.scm: Import (guix licenses) with license: prefix. Fix all license fields.
2018-12-04gnu: pigx-rnaseq: Update to 0.0.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.5. [inputs]: Replace snakemake-4 with snakemake.
2018-12-04doc: Update substitute server.Ludovic Courtès
Fixes an accidental revert in commit 0a5fa004f7f21dc3e01747b8e94fbb21e056e4ca. * doc/guix.texi (SUBSTITUTE-SERVER): Really change to ci.guix.info.
2018-12-04gnu: pari-gp: Update to 2.11.1.Andreas Enge
* gnu/packages/algebra.scm (pari-gp): Update to 2.11.1.
2018-12-04gnu: emacs-irony-mode: Fetch source using git.Tim Gesthuizen
* gnu/packages/emacs.scm (emacs-irony-mode)[source]: Rewrite in terms of GIT-FETCH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04gnu: enlightenment: Use absolute path to 'edje_cc'.Timo Eisenmann
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: In 'set-system-actions', set absolute file name to 'edje_cc'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04gnu: fenics: Skip extra demo in 'check' phase.Paul Garlick
* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl' demo to list of demos that require meshes supplied by git-lfs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04gnu: petsc-openmpi: Configure with support for HYPRE preconditioner.Paul Garlick
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hypre-openmpi. [arguments]: Add 'with-hypre=1' flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-12-04grafts: Mark as non substitutable.Ludovic Courtès
* guix/grafts.scm (graft-derivation/shallow): Pass #:substitutable? to 'build-expression->derivation'.
2018-12-04refresh: '--list-dependents' ignores deprecated packages.Ludovic Courtès
* guix/scripts/refresh.scm (all-packages): Filter out deprecated packages.
2018-12-04build: Default to https://ci.guix.info for substitutes.Ludovic Courtès
* config-daemon.ac (guix_substitute_urls): Always default to "https://ci.guix.info". * doc/guix.texi (SUBSTITUTE-SERVER): Switch to ci.guix.info. * guix/scripts/build.scm (%default-log-urls): Likewise. * guix/scripts/substitute.scm (%default-substitute-urls): Likewise. * guix/store.scm (%default-substitute-urls): Likewise.
2018-12-04Remove most references to hydra.gnu.org.Ludovic Courtès
* Makefile.am (assert-binaries-available): Don't mention hydra.gnu.org in comment. * build-aux/check-available-binaries.scm: Likewise. * build-aux/check-final-inputs-self-contained.scm: Likewise. * doc/guix.texi (SUBSTITUTE-SERVER): New variable. Use it throughout instead of "mirror.hydra.gnu.org". * doc/contributing.texi (Submitting Patches): Likewise. * gnu/services/base.scm (hydra-key-authorization) (guix-activation): Remove mentions of "hydra.gnu.org" in comments and messages. * gnu/system/install.scm (%installation-services): Likewise. * guix/scripts/size.scm (guix-size): Likewise.
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