| Age | Commit message (Expand) | Author |
|---|
| 2022-04-01 | gnu: libtool: Add 2.4.7....* gnu/packages/autotools.scm (libtool-2.4.7): New variable.
| Ludovic Courtès |
| 2022-04-01 | gnu: libressl: Add 'release-monitoring-url' property....* gnu/packages/tls.scm (libressl)[properties]: New field.
| Ludovic Courtès |
| 2022-04-01 | gnu: cl-usocket: Update to 0.8.4....* gnu/packages/lisp-xyz.scm (sbcl-usocket): Update to 0.8.4.
[inputs]: Use new style.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| jgart |
| 2022-03-31 | gnu: libfido2: Fix cross-compilation....* gnu/packages/security-token.scm (libfido2)[arguments]: Set the
PKG_CONFIG_EXECUTABLE variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Sébastien Lerique |
| 2022-03-31 | gnu: libfido2: Use new style for inputs....* gnu/packages/security-token.scm (libfido2)[inputs]: Use new style.
Sort alphabetically.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Sébastien Lerique |
| 2022-03-31 | gnu: tio: Update to 1.36....* gnu/packages/terminals.scm (tio): Update to 1.36.
[native-inputs]: Add pkg-config.
[inputs]: Add libinih.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Raphaël Mélotte via Guix-patches |
| 2022-03-31 | gnu: iverilog: Add zlib dependency for LXT dump file format support....* gnu/packages/fpga.scm (iverilog)[native-inputs]: Add zlib.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Christian Gelinek |
| 2022-03-31 | gnu: gmid: Update to 1.8.3....* gnu/packages/web.scm (gmid): Update to 1.8.3.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| cage |
| 2022-03-31 | gnu: plantuml: Update to 1.2022.3....* gnu/packages/uml.scm (plantuml): Update to 1.2022.3.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Collin J. Doering |
| 2022-03-31 | gnu: python-velocyto: Set cache directory for Numba....* gnu/packages/bioinformatics.scm (python-velocyto)[arguments]: Add phase
'set-numba-cache-dir.
| Ricardo Wurmus |
| 2022-03-31 | gnu: wfmash: Enable test suite....* gnu/packages/bioinformatics.scm (wfmash)[arguments]: Don't disable
tests. Add custom 'check phase based on upstream's own CI tests.
[native-inputs]: Add samtools.
| Efraim Flashner |
| 2022-03-31 | gnu: Add wfmash....* gnu/packages/bioinformatics.scm (wfmash): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: atomic-queue: Do not look for boost when cross-compiling....* gnu/packages/cpp.scm (atomic-queue)[arguments]: When cross-compiling, add a
do-not-check-for-boost phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: atomic-queue: Run tests correctly....* gnu/packages/cpp.scm (atomic-queue)[arguments]: In the check phase, run
tests instead of returning a function to run them.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: htslib: Add bzip2 and xz to inputs....htslib links to libbz2 from bzip2 and liblzma from xz. Therefore, bzip2 and xz
should be listed in inputs even though they are already present implicitly in
native-inputs. Else, cross-compilation will fail.
* gnu/packages/bioinformatics.scm (htslib)[inputs]: Add bzip2 and xz.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: gsl: Force bootstrap when cross-compiling to riscv64-linux....* gnu/packages/maths.scm (gsl)[arguments]: Force an autotools bootstrap
when cross-compiling to riscv64-linux.
[native-inputs]: Add autoconf, automake and libtool when cross-compiling
to riscv64-linux.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: python-loompy: Update to 3.0.7....* gnu/packages/bioinformatics.scm (python-loompy): Update to 3.0.7.
[arguments]: Add build phases 'fix-h5py-error and 'set-numba-cache-dir;
respect TESTS? argument in 'check phase.
[propagated-inputs]: Add python-click, python-numba, and
python-numpy-groupies.
| Ricardo Wurmus |
| 2022-03-31 | gnu: Add python-numpy-groupies....* gnu/packages/python-science.scm (python-numpy-groupies): New variable.
| Ricardo Wurmus |
| 2022-03-31 | gnu: Add riscv-pk....* gnu/packages/virtualization.scm (riscv-pk): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: spike: Substitute path to dtc instead of wrapping executables....* gnu/packages/virtualization.scm (spike)[arguments]: Delete the wrap-binary
phase. Add a configure-dtc-path phase that substitutes the absolute path to
dtc.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Arun Isaac |
| 2022-03-31 | gnu: python-anndata: Update to 0.8.0....* gnu/packages/python-xyz.scm (python-anndata): Update to 0.8.0.
[arguments]: Remove build phase 'relax-dependency-requirements.
| Ricardo Wurmus |
| 2022-03-31 | gnu: python-h5py: Update to 3.6.0....* gnu/packages/python-xyz.scm (python-h5py): Update to 3.6.0.
[arguments]: Set HDF5_DIR variable instead of patching files.
| Ricardo Wurmus |
| 2022-03-31 | gnu: python2-h5py: Detach version and source from python-h5py....* gnu/packages/python-xyz.scm (python2-h5py): Override source and version
field.
(python-h5py)[properties]: Record python2-variant.
| Ricardo Wurmus |
| 2022-03-30 | gnu: weechat: Update to 3.5....* gnu/packages/irc.scm (weechat): Update to 3.5.
[inputs]: Add zstd:lib.
| Efraim Flashner |
| 2022-03-30 | gnu: msmtp: Update to 1.8.20....* gnu/packages/mail.scm (msmtp): Update to 1.8.20.
| Efraim Flashner |
| 2022-03-30 | gnu: ncdu-2: Update to 2.1.1....* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.1.
| Efraim Flashner |
| 2022-03-30 | gnu: ncdu2: Set upstream name....* gnu/packages/ncdu.scm (ncdu-2)[properties]: New field.
| Efraim Flashner |
| 2022-03-30 | gnu: anonip: Update to 1.1.0....* gnu/packages/web.scm (anonip): Update to 1.1.0.
[source]: Fetch from git.
[arguments]: Run tests with pytest.
[native-inputs]: Add python-pytest and python-pytest-cov.
| Ricardo Wurmus |
| 2022-03-30 | lsof: Prevent mass-rebuild....* gnu/packages/lsof.scm (lsof): Set LINUX_CONF_CC variable only when
cross-compiling.
| Mathieu Othacehe |
| 2022-03-30 | gnu: lbzip2: Fix cross-compilation....* gnu/packages/compression.scm (lbzip2)[arguments]: Search (or
native-inputs inputs) for gnulib-tool.py.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Brian Kubisiak |
| 2022-03-30 | gnu: lsof: Fix cross-compilation....* gnu/packages/lsof (lsof)[arguments]: Add LINUX_CONF_CC environment
variable.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Brian Kubisiak |
| 2022-03-29 | gnu: Mutt: Update to 2.2.2....* gnu/packages/mail.scm (mutt): Update to 2.2.2.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 4.9: Update to 4.9.309....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.309.
(linux-libre-4.9-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 4.14: Update to 4.14.274....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.274.
(linux-libre-4.14-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 4.19: Update to 4.19.237....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.237.
(linux-libre-4.19-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 5.4: Update to 5.4.188....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.188.
(linux-libre-5.4-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 5.10: Update to 5.10.109....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.109.
(linux-libre-5.10-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 5.15: Update to 5.15.32....* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.32.
(linux-libre-5.15-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 5.16: Update to 5.16.18....* gnu/packages/linux.scm (linux-libre-5.16-version): Update to 5.16.18.
(linux-libre-5.16-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: linux-libre 5.17: Update to 5.17.1....* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.1.
(linux-libre-5.17-pristine-source): Update hash.
| Leo Famulari |
| 2022-03-29 | gnu: gmid: Update to 1.8.2....* gnu/packages/web.scm (gmid): Update to 1.8.2.
[native-inputs]: Remove which.
Signed-off-by: Leo Famulari <leo@famulari.name>
| cage |
| 2022-03-29 | gnu: git-annex: Update to 10.20220322....* gnu/packages/haskell-apps.scm (git-annex): Update to 10.20220322.
[inputs]: Add ghc-http-client-restricted.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kyle Meyer |
| 2022-03-29 | gnu: Add ghc-http-client-restricted....* gnu/packages/haskell-web.scm (ghc-http-client-restricted): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kyle Meyer |
| 2022-03-29 | gnu: ghc-http-client-tls: Update to 0.3.6.1....* gnu/packages/haskell-web.scm (ghc-http-client-tls): Update to 0.3.6.1.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kyle Meyer |
| 2022-03-29 | gnu: ghc-http-client: Update to 0.7.11....* gnu/packages/haskell-web.scm (ghc-http-client): Update to 0.7.11.
[inputs]: Add ghc-iproute.
Signed-off-by: Leo Famulari <leo@famulari.name>
| Kyle Meyer |
| 2022-03-29 | gnu: r-signac: Update to 1.6.0-2.458e647....* gnu/packages/bioinformatics.scm (r-signac): Update to 1.6.0-2.458e647.
[propagated-inputs]: Remove r-annotationfilter, r-biocgenerics, r-biostrings,
r-biovizbase, and r-ggbio; add r-qlcmatrix and r-tidyselect.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-03-29 | gnu: plink-ng: Update to 2.00a3-20220315....* gnu/packages/bioinformatics.scm (plink-ng): Update to 2.00a3-20220315.
| Ricardo Wurmus |
| 2022-03-29 | gnu: Add r-cytobackbone....* gnu/packages/bioinformatics.scm (r-cytobackbone): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Mădălin Ionel Patrașcu |
| 2022-03-29 | gnu: pigx-sars-cov2-ww: Update to 0.0.5....* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.5.
[source]: Remove patch.
[arguments]: Disable tests.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Ricardo Wurmus |
| 2022-03-29 | gnu: pigx-rnaseq: Update to 0.0.20....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.20.
[source]: Remove patch.
[inputs]: Add megadepth.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Remove patch.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Ricardo Wurmus |
