| Age | Commit message (Expand) | Author |
|---|
| 2023-07-13 | gnu: gnumach-headers: Cross-build without relying on x86....* gnu/packages/hurd.scm (gnumach-headers): Remove configure flags where we
say the builder is running x86.
* gnu/packages/cross-base.scm (cross-gnumach-headers): Work around limitation
of build system, by manually changing the target host_cpu without relying on
--host, because we don't have a working cross-compiler yet.
| Josselin Poiret |
| 2023-07-13 | gnu: glibc/hurd-headers: Properly cross-build....* gnu/packages/base.scm (glibc/hurd-headers): Rely on cross-mig, and remove
hardcoded configure flag `--host=i586-pc-gnu`.
* gnu/packages/cross-base.scm (cross-kernel-headers*): Add `--host` and
`--build` configure flags.
| Josselin Poiret |
| 2023-07-13 | gnu: arpack-ng: Update to 3.9.0....* gnu/packages/maths.scm (arpack-ng): Update to 3.9.0.
[source]: Add 'patches'.
[build-system]: Switch to CMAKE-BUILD-SYSTEM.
[native-inputs]: Remove AUTOCONF, AUTOMAKE, and LIBTOOL.
(arpack-ng-openmpi)[inputs]: Use 'modify-inputs'.
[arguments]: Use gexps.
* gnu/packages/patches/arpack-ng-propagate-rng-state.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
| Ludovic Courtès |
| 2023-07-13 | gnu: sssd: Update to 2.9.1....* gnu/packages/sssd.scm (sssd): Update to 2.9.1.
[native-inputs]: Add bc.
* gnu/packages/patches/sssd-system-directories.patch: Adjust for new version.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Timotej Lazar |
| 2023-07-13 | shell: Really take system into account in the cache key....Fixes <https://issues.guix.gnu.org/63230>.
Previously, when running "guix shell -s X ...", OPTS would contain
something like '((system . "X") ... (system . "DEFAULT")). Thus, since
'profile-cached-gc-root' would iterate over it in this order, "DEFAULT"
would be passed to 'profile-file-cache-key' and 'profile-spec-cache-key'
instead of "X".
* guix/scripts/shell.scm (profile-cached-gc-root): Reverse OPTS before
entering 'loop'.
| Ludovic Courtès |
| 2023-07-13 | gnu: clang-runtime-15: Fix address sanitizer support...$ guix shell clang-toolchain@15 -- clang -o test -fsanitize=address test.c
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan_static-x86_64.a: No such file or directory
ld: cannot find /gnu/store/i429h17s15g48ir9vl1bzp3cv39l5pib-clang-runtime-15.0.7/lib/linux/libclang_rt.asan-x86_64.a: No such file or directory
clang-15: error: linker command failed with exit code 1 (use -v to see invocation)
* gnu/packages/llvm.scm (clang-runtime-15): Fix address sanitizer
support by bringing back the static libraries.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Tobias Kortkamp |
| 2023-07-13 | gnu: libleak: Update to 0.3.6....* gnu/packages/debug.scm (libleak): Update to 0.3.6.
| fanquake |
| 2023-07-12 | gnu: Add r-numbat....* gnu/packages/bioinformatics.scm (r-numbat): New variable.
| Ricardo Wurmus |
| 2023-07-12 | gnu: Add r-bpcells....* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
| Ricardo Wurmus |
| 2023-07-12 | gnu: nyxt: Update to 3.4.0....* gnu/packages/web-browsers.scm (nyxt): Update to 3.4.0.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Andre A. Gomes |
| 2023-07-12 | gnu: strace: Update to 6.4....* gnu/packages/linux.scm (strace): Update to 6.4.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Michael Ford |
| 2023-07-12 | transformations: Allow tuning go packages....* guix/transformations.scm (build-system-with-tuning-compiler): When
checking if a microarchitecture is supported by the compiler, also check
if it is a go compiler which supports that psabi. Add a phase after
'setup-go-environment to set the go microarchitecture.
| Efraim Flashner |
| 2023-07-12 | gnu: go: Add CPU tuning targets....* gnu/packages/golang.scm (go-1.17)[properties]: New field.
(%go-1.17-arm-micro-architectures,
%go-1.17-powerpc64le-micro-architectures,
%go-1.18-x86_64-micro-architectures): New variables.
(go-1.18)[properties]: New field.
| Efraim Flashner |
| 2023-07-12 | guix: cpu: Add gcc-architecture->micro-architecture-level mapping....* guix/cpu.scm (gcc-architecture->micro-architecture-level): New
variable.
| Efraim Flashner |
| 2023-07-12 | guix: cpu: Refactor cpu->gcc-architecture....* guix/cpu.scm (cpu->gcc-architecture): Refactor to wrap all the x86_64
options inside a common letrec-syntax.
| Efraim Flashner |
| 2023-07-12 | guix: cpu: Rewrite fallback for x86_64 cpu->gcc-architecture....* guix/cpu.scm (cpu->gcc-architecture): Adjust the fallback case to use
cpu->micro-architecture-level.
| Efraim Flashner |
| 2023-07-12 | guix: cpu: Add generalized CPU matching....* guix/cpu.scm (cpu->micro-architecture-level): New variable.
| Efraim Flashner |
| 2023-07-12 | gnu: %gcc-11-x86_64-micro-architectures: Add psabi entries....* gnu/packages/gcc.scm (%gcc-11-x86_64-micro-architectures): Add entries
for x86_64-v{1,2,3,4}.
| Efraim Flashner |
| 2023-07-12 | gnu: r-tcgabiolinks: Update to 2.28.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-bionero: Update to 1.8.5....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.5.
[propagated-inputs]: Remove r-ggnewscale and r-networkd3; add r-ggdendro and r-rlang.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-biocthis: Update to 1.10.3....* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-basilisk: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-delayedmatrixstats: Update to 1.22.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.22.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-sparsematrixstats: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-fishpond: Update to 2.6.2....* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.6.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-bioccheck: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.36.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-universalmotif: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.18.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-variancepartition: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.30.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-variantfiltering: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-variantfiltering): Update to 1.36.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-quasr: Update to 1.40.1....* gnu/packages/bioconductor.scm (r-quasr): Update to 1.40.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-motifbreakr: Update to 2.14.2....* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.14.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-lpsymphony: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-lpsymphony): Update to 1.28.1.
[native-inputs]: Add gfortran.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-glmgampoi: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-interactionset: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.28.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-matrixgenerics: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.12.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-systempiper: Update to 2.6.3....* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.6.3.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-summarizedexperiment: Update to 1.30.2....* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.30.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-maaslin2: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-maaslin2): Update to 1.14.1.
[propagated-inputs]: Remove r-lpsymphony; add r-tibble.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-limma: Update to 3.56.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-lfa: Update to 2.0.11....* gnu/packages/bioconductor.scm (r-lfa): Update to 2.0.11.
[propagated-inputs]: Add r-rspectra.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-genomicfeatures: Update to 1.52.1....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.52.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-deseq2: Update to 1.40.2....* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-biomart: Update to 2.56.1....* gnu/packages/bioconductor.scm (r-biomart): Update to 2.56.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-annotationforge: Update to 1.42.2....* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.42.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-genomeinfodb: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.36.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-annotationdbi: Update to 1.62.2....* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.2.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-affy: Update to 1.78.1....* gnu/packages/bioconductor.scm (r-affy): Update to 1.78.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-isoformswitchanalyzer: Update to 2.0.1....* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 2.0.1.
[propagated-inputs]: Remove r-drimseq; add r-biocparallel, r-pfamanalyzer, r-s4vectors,
r-saturn, r-summarizedexperiment, r-sva, and r-tidyr.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-iranges: Update to 2.34.1....* gnu/packages/bioconductor.scm (r-iranges): Update to 2.34.1.
| Ricardo Wurmus |
| 2023-07-12 | gnu: r-delayedarray: Update to 0.26.6....* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.6.
| Ricardo Wurmus |
