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2017-08-10gnu: openjpeg: Update to 2.2.0 [security fixes]....In addition to the patches we already had (which are not mentioned in the ChangeLog, but verified by following their respective GitHub issues) this release also fixes CVE-2016-9112, CVE-2016-5139, CVE-2016-5152, CVE-2016-5158, CVE-2016-5159, CVE-2016-1626 and CVE-2016-1628. See <https://github.com/uclouvain/openjpeg/blob/v2.2.0/CHANGELOG.md> for details. * gnu/packages/patches/openjpeg-CVE-2016-9572-CVE-2016-9573.patch, gnu/packages/patches/openjpeg-CVE-2016-9850-CVE-2016-9851.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/image.scm (openjpeg): Update to 2.2.0. [source](patches): Remove. * gnu/packages/gstreamer.scm (gst-plugins-bad)[arguments]: Add phase to patch hard-coded openjpeg-2.1 path. Marius Bakke
2017-08-10gnu: postgresql: Update to 9.6.4 [fixes CVE-2017-{7546,7547,7548}]....See <https://www.postgresql.org/about/news/1772/> for more information. * gnu/packages/databases.scm (postgresql): Update to 9.6.4. Marius Bakke
2017-08-10doc: Fix typo....* doc/guix.texi (Invoking guix pack): Fix typo. Leo Famulari
2017-08-10gnu: mercurial: Update to 4.2.3 [fixes CVE-2017-1000116]....* gnu/packages/version-control.scm (mercurial): Update to 4.2.3. Leo Famulari
2017-08-10gnu: git: Update to 2.14.1 [fixes CVE-2017-1000117]....* gnu/packages/version-control.scm (git): Update to 2.14.1. Leo Famulari
2017-08-10gnu: subversion: Update to 1.8.19 [fixes CVE-2017-9800]....* gnu/packages/version-control.scm (subversion): Update to 1.8.19. [source]: Add alternate URL. Leo Famulari
2017-08-10gnu: Add emacs-engine-mode....* gnu/packages/emacs.scm (emacs-engine-mode): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Oleg Pykhalov
2017-08-10gnu: libsoup: Update to 2.58.2 (fixes CVE-2017-2885)....* gnu/packages/gnome.scm (libsoup): Update to 2.58.2. Leo Famulari
2017-08-10gnu: catimg: Update to 2.4.0....* gnu/packages/image-viewers.scm (catimg): Update to 2.4.0. Tobias Geerinckx-Rice
2017-08-10gnu: cppcheck: Update to 1.80....* gnu/packages/check.scm (cppcheck): Update to 1.80. Tobias Geerinckx-Rice
2017-08-10gnu: vdirsyncer: Update to 0.16.1....* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.1. Tobias Geerinckx-Rice
2017-08-10gnu: ruby-bio-commandeer: Update to 0.4.0....* gnu/packages/ruby.scm (ruby-bio-commandeer): Update to 0.4.0. Ben Woodcroft
2017-08-10gnu: Add emacs-erc-hl-nicks....* gnu/packages/emacs.scm (emacs-erc-hl-nicks): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Oleg Pykhalov
2017-08-10gnu: Add emacs-gitpatch....By the way, “gitpatch.el” says different version than release tarball. Do I need to ask a developer? --8<---------------cut here---------------start------------->8--- ;; Author: Feng Shu <tumashu@163.com> ;; Homepage: https://github.com/tumashu/gitpatch ;; Keywords: convenience ;; Package-Requires: ((emacs "24.3")) ;; Version: 0.10 --8<---------------cut here---------------end--------------->8--- >From 9eddf07fa401468738c2f48a25e51ddef2a3ceed Mon Sep 17 00:00:00 2001 From: Oleg Pykhalov <go.wigust@gmail.com> Date: Sat, 29 Jul 2017 14:22:48 +0300 Subject: [PATCH] gnu: Add emacs-gitpatch. * gnu/packages/emacs.scm (emacs-gitpatch): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Oleg Pykhalov
2017-08-10gnu: Add emacs-git-messenger....gnu/packages/emacs.scm (emacs-git-messenger): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Oleg Pykhalov
2017-08-09services: admin: Simplify the handling of the Tailon debug? option....* gnu/services/admin.scm (tailon-configuration-file-compiler): Simplify the handling of debug?. Christopher Baines
2017-08-09services: Update the Tailon service for Tailon 1.3.0....Tailon 1.3.0 (upgraded from 1.1.1) adds support for HTTP authentication. * gnu/services/admin.scm (<tailon-configuration-file>): Add http-auth and users configuration values. (tailon-configuration-file-http-auth, tailon-configuration-file-users): New procedures. (tailon-configuration-file-compiler): Add support for the http-auth and users configuration options. * doc/guix.texi (Monitoring Services): Document authentication for Tailon. Christopher Baines
2017-08-09services: Add missing wrap-lines option to tailon....* gnu/services/admin.scm (<tailon-configuration-file>): Add wrap-lines. (tailon-configuration-wrap-lines): New procedure. (tailon-configuration-file-compiler): Add support for wrap-lines. * doc/guix.texi (Monitoring Services): Document the wrap-lines Tailon configuration option. Christopher Baines
2017-08-09gnu: Update tailon to version 1.3.0....From version 1.1.1. * gnu/packages/logging.scm (tailon)[version]: Change to 1.3.0. [inputs]: Add python-tornado-http-auth. Christopher Baines
2017-08-09gnu: Add python-tornado-http-auth....* gnu/packages/python.scm (python-tornado-http-auth): New variable. Christopher Baines
2017-08-10gnu: nmap: Update to 7.60....* gnu/packages/admin.scm (nmap): Update to 7.60. Marius Bakke
2017-08-10gnu: curl: Update replacement to 7.55.0. [security fixes]...Fixes CVE-2017-1000099, CVE-2017-1000100, and CVE-2017-100101. See <https://curl.haxx.se/docs/security.html> for details. * gnu/packages/curl.scm (curl)[replacement]: Update to 7.55.0. (curl-7.54.1): Rename to ... (curl-7.55.0): ... this. [source]: Update source URI to match upstream compression method change. [arguments]: Add 'fix-Makefile' phase. Marius Bakke
2017-08-10gnu: samba: Update to 4.6.7....* gnu/packages/samba.scm (samba): Update to 4.6.7. Marius Bakke
2017-08-09gnu: python-nbformat: Update to 4.3.0....* gnu/packages/python.scm (python-nbformat, python2-nbformat): Update to 4.3.0. Leo Famulari
2017-08-09download: Add the canonical GnuPG download site....* guix/download.scm (%mirrors)<gnupg>: Add https://gnupg.org. Leo Famulari
2017-08-09gnu: gnupg: Update to 2.1.23....* gnu/packages/gnupg.scm (gnupg): Update to 2.1.23. [arguments]: Remove 'enable-gpg2-is-gpg' from #:configure-flags, since it is now the default. Leo Famulari
2017-08-09gnu: r-wgcna: Update to 1.61....* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.61. [propagated-inputs]: Add r-rcpp, r-robust, r-survival. Ricardo Wurmus
2017-08-09gnu: Add r-robust....* gnu/packages/statistics.scm (r-robust): New variable. Ricardo Wurmus
2017-08-09gnu: Add r-fit-models....* gnu/packages/statistics.scm (r-fit-models): New variable. Ricardo Wurmus
2017-08-09gnu: Add r-rrcov....* gnu/packages/statistics.scm (r-rrcov): New variable. Ricardo Wurmus
2017-08-09gnu: Add r-pcapp....* gnu/packages/statistics.scm (r-pcapp): New variable. Ricardo Wurmus
2017-08-09gnu: r-gdtools: Update to 0.1.5....* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.5. Ricardo Wurmus
2017-08-09gnu: r-ggbeeswarm: Update to 0.6.0....* gnu/packages/statistics.scm (r-ggbeeswarm): Update to 0.6.0. Ricardo Wurmus
2017-08-09gnu: icecat: Add more fixes from upstream mozilla-esr52....* gnu/packages/gnuzilla.scm (icecat)[source]: Add fixes for CVE-2017-7802, CVE-2017-7803, CVE-2017-7807, and the remaining 6 out of 23 changesets for CVE-2017-7779. Mark H Weaver
2017-08-09gnu: icecat: Rename patches to reflect CVE assignments....Document that our existing patches include fixes for CVE-2017-7753, CVE-2017-7784, CVE-2017-7786, CVE-2017-7787, CVE-2017-7791, CVE-2017-7792, CVE-2017-7798, CVE-2017-7798, CVE-2017-7800, CVE-2017-7801, and 17 out of 23 changesets for CVE-2017-7779. * gnu/packages/gnuzilla.scm (icecat)[source]: Rename patches to reflect CVE assignments. Mark H Weaver
2017-08-09gnu: gnurl: Update to 7.55.0....* gnu/packages/gnunet.scm (gnurl): Update to 7.55.0. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> ng0
2017-08-09gnu: virt-manager: Update to 1.4.2....* gnu/packages/virtualization.scm (virt-manager): Update to 1.4.2. Tobias Geerinckx-Rice
2017-08-09gnu: libgdata: Disable failing tests....* gnu/packages/gnome.scm (libgdata)[arguments]: Add ‘disable-failing-tests’ phase. Tobias Geerinckx-Rice
2017-08-09gnu: Add reference to (gnu packages graph)....This is a follow-up to 1738138cb3a48ed2f55c59c8d7c6ce12a4c4dcb3. Ricardo Wurmus
2017-08-09gnu: r-igraph: Move to (gnu packages graph)....* gnu/packages/statistics.scm (r-igraph): Move from here... * gnu/packages/graph.scm (r-igraph): ...to here. Ricardo Wurmus
2017-08-09gnu: Add python-igraph....* gnu/packages/graph.scm (python-igraph): New variable. Ricardo Wurmus
2017-08-09gnu: Add igraph....* gnu/packages/graph.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2017-08-09gnu: viewnior: Don't build icon-theme.cache....* gnu/packages/image-viewers.scm (viewnior)[arguments]: Add phase to disable building the icon-theme.cache. Efraim Flashner
2017-08-09gnu: googletest: Build shared libraries....* gnu/packages/check.scm (googletest)[arguments]: Pass "-DBUILD_SHARED_LIBS=ON" in #:configure-flags. Manolis Ragkousis
2017-08-09gnu: Add ois....* gnu/packages/game-development.scm (ois): New variable. Manolis Ragkousis
2017-08-09gnu: dealii: Update to 8.5.0....* gnu/packages/maths.scm (dealii): Update to 8.5.0. [arguments]: Delete 'hint-example-prefix phase, which would need adjusting for this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'. Adjust configuration flags. Eric Bavier
2017-08-09gnu: stress-make: Patch default shell....* gnu/packages/debug.scm (stress-make)[arguments]: Add 'set-default-shell phase. Eric Bavier
2017-08-09gnu: suitesparse: Update to 4.5.5....* gnu/packages/maths.scm (suitesparse): Update to 4.5.5. [source]: Add 'modules' and 'snippet' field to remove bundled source. [arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis. Make build parallel, since it now appears to be safe. [inputs]: Add metis. Eric Bavier
2017-08-09gnu: suitesparse: Use modify-phases....* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases. Eric Bavier
2017-08-09gnu: petsc, slepc: Use 'parallel-job-count'....* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to override default unlimited '-j'. (petsc)[arguments]: Scrub build machine cores from installed files in 'clean-local-references' phase. Eric Bavier
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