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2020-03-27gnu: r-class: Update to 7.3-16.•••* gnu/packages/statistics.scm (r-class): Update to 7.3-16. Ricardo Wurmus
2020-03-27gnu: r-xgboost: Update to 1.0.0.2.•••* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2. Ricardo Wurmus
2020-03-27gnu: r-rjava: Update to 0.9-12.•••* gnu/packages/cran.scm (r-rjava): Update to 0.9-12. Ricardo Wurmus
2020-03-27gnu: r-sf: Update to 0.9-0.•••* gnu/packages/cran.scm (r-sf): Update to 0.9-0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-27gnu: r-bayestestr: Update to 0.5.3.•••* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-27gnu: r-hdf5r: Update to 1.3.2.•••* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-03-27gnu: r-ggally: Update to 1.5.0.•••* gnu/packages/cran.scm (r-ggally): Update to 1.5.0. Ricardo Wurmus
2020-03-26gnu: guix-data-service: Update to 0.0.1-19.d1c243f.•••These changes support the guix-data-service-backup-database and guix-data-service-create-small-backup scripts. These are shell scripts, so require coreutils from the build environment at runtime as well as binaries from postgresql, ephemeralpg and optionally util-linux (for ionice and renice). * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f. [arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the 'install phase to wrap all bin files with some inputs as well. [inputs]: Add util-linux, include ephemeralpg from native-inputs and switch postgresql for postgresql-11. [native-inputs]: Move ephemeralpg to inputs. Christopher Baines
2020-03-26gnu: Add python-json5.•••* gnu/packages/python-xyz.scm (python-json5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-03-26gnu: Add python-pytest-check-links.•••* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2020-03-26vm: Distinguish between success and failure of the guest code.•••Fixes <https://bugs.gnu.org/34276>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]: Produce '/xchg/.exit-status' file upon success. * gnu/build/vm.scm (load-in-linux-vm): Check for 'xchg/.exit-status' once QEMU has completed and respond accordingly. Ludovic Courtès
2020-03-26gnu: Add ROPgadget.•••* gnu/packages/cybersecurity.scm: New file. (ropgadget): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Register the file. Jakub Kądziołka
2020-03-26gnu: java-tomcat: Update to 8.5.53.•••This fixes CVE-2020-1938 ("Ghostcat"). * gnu/packages/web.scm (java-tomcat): Update to 8.5.53. [properties]: Add cpe-name. Björn Höfling
2020-03-26gnu: icu4c: Explicitly add patch flags in replacement package.•••This is to prevent a build failure when this gets merged to 'core-updates' which does not have any patch-flags to inherit. * gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field. Marius Bakke
2020-03-26gnu: help2man: Update to 1.47.13.•••* gnu/packages/man.scm (help2man/latest): Update to 1.47.13. Marius Bakke
2020-03-26gnu: Add python-pywinrm.•••* gnu/packages/python-xyz.scm (python-pywinrm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou
2020-03-26gnu: Add python-requests_ntlm.•••* gnu/packages/python-web.scm (python-requests_ntlm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou
2020-03-26gnu: Add python-ntlm-auth.•••* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou
2020-03-26gnu: Add python-kerberos.•••* gnu/packages/python-crypto.scm (python-kerberos): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Alexandros Theodotou
2020-03-26gnu: Update sambamba to 0.7.1.•••* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1; Remove unneeded undead input. Roel Janssen
2020-03-26gnu: Add 7kaa.•••* gnu/packages/games.scm (7kaa): New variable. Naga Malleswari
2020-03-26gnu: boinc-client: Update to 7.16.5.•••* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5. Efraim Flashner
2020-03-26gnu: boinc-server: Fix build.•••* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl with openssl-1.0, mariadb with mariadb:dev. Efraim Flashner
2020-03-26status: Display synthetic information about profiles being built.•••* guix/status.scm (print-build-event): Add 'profile case. * guix/scripts/package.scm (build-and-use-profile): Remove now redundant message. Ludovic Courtès
2020-03-26profiles: 'profile-derivation' sets a 'type' property.•••* guix/profiles.scm (profile-derivation): Pass #:properties to 'gexp->derivation'. Ludovic Courtès
2020-03-26gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.•••Fixes <https://bugs.gnu.org/24076>. Reported by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/packages/patches/gnupg-default-pinentry.patch: New file. * gnu/packages/gnupg.scm (gnupg)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2020-03-26gnu: youtube-viewer: Don't build gtk3 front-end.•••* gnu/packages/video.scm (youtube-viewer)[arguments]: Update module-build-flags to only build gtk2 front-end. Efraim Flashner
2020-03-26gnu: youtube-viewer: Update to 3.7.5.•••* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5. [inputs]: Add perl-json-xs. Efraim Flashner
2020-03-26tests: install: Add %test-gui-installed-desktop-os-encrypted.•••* gnu/tests/install.scm (gui-test-program): Add a desktop? argument, and pass it to choose-services, (installation-target-os-for-gui-tests): new procedure, (installation-target-desktop-os-for-gui-tests): new procedure, (guided-installation-test): add target-os and desktop? arguments. Use target-os instead of the previous os variable. Pass desktop? argument to gui-test-program. (%test-gui-installed-os): Adapt accordingly, (%test-gui-installed-os-encrypted): ditto, (%test-gui-installed-desktop-os-encrypted): new exported variable. Mathieu Othacehe
2020-03-26installer: tests: Use a filter to select desktop-environments.•••* gnu/installer/tests.scm (choose-services): Turn desktop-environments list into a choose-desktop-environment procedure. This way, it is easier to select all desktop-environments or none, in the same way as choose-network-service? and choose-network-management-tool? arguments. Mathieu Othacehe
2020-03-26gnu: emacs-helm-exwm: Update to 0.0.2.•••* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2. Pierre Neidhardt
2020-03-26gnu: r-argon2: Fix case in synopsis and use full sentence in description.•••* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case. [description]: Use full sentence. Ricardo Wurmus
2020-03-26gnu: r-getpass: Change case in synopsis and adjust indentation.•••* gnu/packages/cran.scm (r-getpass): Adjust indentation. [synopsis]: Do not capitalize all words. Ricardo Wurmus
2020-03-26gnu: r-remoter: Fix indentation.•••* gnu/packages/cran.scm (r-remoter): Fix indentation. Ricardo Wurmus
2020-03-26gnu: r-remoter: Use lower case in the synopsis.•••* gnu/packages/cran.scm (r-remoter)[synopsis]: Do not capitalize all words. Ricardo Wurmus
2020-03-25gnu: linux-libre-5.4-source: Add patch to support pinebook pro.•••* gnu/packages/patches/linux-libre-support-for-Pinebook-Pro.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/linux (linux-libre-5.4-source): Add patch. Vagrant Cascadian
2020-03-25gnu: linux-libre: Update deblob scripts.•••* gnu/packages/linux.scm (deblob-scripts-5.4): Update to 5.4.28. Mark H Weaver
2020-03-25gnu: linux-libre: Update to 5.4.28.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.28. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver
2020-03-25gnu: linux-libre@4.19: Update to 4.19.113.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.113. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2020-03-25gnu: icu4c: Fix CVE-2020-10531.•••* gnu/packages/patches/icu4c-CVE-2020-10531.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c)[replacement]: New field. (icu4c/fixed): New variable. Leo Famulari
2020-03-25gnu: Add r-remoter.•••* gnu/packages/cran.scm (r-remoter): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Todor Kondić
2020-03-25gnu: Add r-getpass.•••* gnu/packages/cran.scm (r-getpass): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Todor Kondić
2020-03-25gnu: Add r-argon2.•••* gnu/packages/cran.scm (r-argon2): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Todor Kondić
2020-03-25gnu: Add emacs-chronometrist.•••* gnu/packages/emacs-xyz.scm (emacs-chronometrist): New variable. Nicolas Goaziou
2020-03-25gnu: abseil-cpp: Update to 20200225.1.•••* gnu/packages/cpp.scm (abseil-cpp): Update to 20200225.1. Ricardo Wurmus
2020-03-25import/cran: Import missing module.•••This is a follow-up to commit b005c240bb5e436ffe9d55c2dd75c9af85aa0fdd. Reported-by: Ludovic Courtès <ludo@gnu.org> * guix/import/cran.scm: Import (guix ui) module. Ricardo Wurmus
2020-03-25gnu: gnu-pw-mgr: Build reproducibly.•••* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr)[native-inputs]: Remove AUTOGEN so that man pages are not regenerated with a fresh date. Ludovic Courtès
2020-03-25tests: Adjust to 'show-manifest-transaction' changes.•••This is a followup to 3e5ab0a7a9399bb098b9ced46bf3cbf4085c6bab. * tests/ui.scm ("show-manifest-transaction"): Update regexp. * tests/guix-package.sh: Adjust Emacs regexp in --with-source test. Ludovic Courtès
2020-03-25environment: Use 'with-build-handler'.•••* guix/scripts/environment.scm (build-environment): Remove. (guix-environment): Wrap 'with-status-verbosity' in 'with-build-handler'. Remove 'dry-run?' conditional. Use 'built-derivations' instead of 'build-environment'. Ludovic Courtès
2020-03-25archive: Use 'with-build-handler'.•••* guix/scripts/archive.scm (export-from-store): Remove call to 'show-what-to-build' and dry-run? condition. (guix-archive): Wrap 'cond' in 'with-build-handler'. Ludovic Courtès
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