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2022-10-05gnu: Add cd-hit-auxtools....* gnu/packages/bioinformatics.scm (cd-hit-auxtools): New variable. Ricardo Wurmus
2022-10-05gnu: cd-hit: Update to 4.8.1....* gnu/packages/bioinformatics.scm (cd-hit): Update to 4.8.1. [arguments]: Do not use quasiquote; remove trailing #T from build phases. [inputs]: Add zlib. Ricardo Wurmus
2022-10-04gnu: kaiju: Update to 1.9.0....* gnu/packages/bioinformatics.scm (kaiju): Update to 1.9.0. [arguments]: Use gexps; wrap scripts in install phase. [inputs]: Add bzip2, coreutils, curl, gawk, guile-3.0, gzip, python-wrapper, tar, and wget. Ricardo Wurmus
2022-10-04gnu: ibus: Build with GTK4....* gnu/packages/ibus.scm (ibus)[arguments]: Add “--enable-gtk4”. [inputs]: Add gtk and pango-next. Liliana Marie Prikler
2022-10-04gnu: sdl2: Use ibus-minimal instead of ibus....This prevents an input cycle between GTK -> ffmpeg -> sdl2 -> ibus -> GTK. * gnu/packages/sdl.scm (sdl2)[inputs]: Replace ibus with ibus-minimal. Liliana Marie Prikler
2022-10-04gnu: Add ibus-minimal....* gnu/packages/ibus.scm (ibus-minimal): New variable. (ibus): Inherit from ibus-minimal. Liliana Marie Prikler
2022-10-04gnu: icedove: Update to 102.3.1 [security fixes]....Fixes CVE-2022-39236, CVE-2022-39249, CVE-2022-39250 and CVE-2022-39251. * gnu/packages/gnuzilla.scm (icedove): Update to 102.3.1. Jonathan Brielmaier
2022-10-04gnu: eog-plugins: Fix source URL....The incorrect URL was introduced in d6d861c6151fb2cb9296b993425d9a64a7653d95. * gnu/packages/gnome.scm (eog-plugins)[source]: Change directory in URL. Ludovic Courtès
2022-10-04gnu: Add awscli-2....* gnu/packages/python-web.scm (awscli-2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zzull
2022-10-04gnu: Add python-executor....* gnu/packages/python-xyz.scm (python-executor): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zzull
2022-10-04gnu: Add python-property-manager....* gnu/packages/python-xyz.scm (python-property-manager): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Zzull
2022-10-04services: anonip: Bail out when the input is not a FIFO....* gnu/services/web.scm (anonip-shepherd-service)[start]: Accept zero arguments. Define 'spawn'. Print a message and return #f when #$INPUT does not denote a FIFO. Ludovic Courtès
2022-10-04channels: Warn about missing introductions....* guix/channels.scm (latest-channel-instance): Warn when CHANNEL has no introduction and CHECKOUT contains '.guix-authorizations'. Ludovic Courtès
2022-10-04gnu: guix: Update to 17134b9....* gnu/packages/package-management.scm (guix): Update to 17134b9. Ludovic Courtès
2022-10-04home: Add home-batsignal-service-type....* gnu/home/services/pm.scm (home-batsignal-service-type): New variable. (home-batsignal-configuration): New record type. * doc/guix.texi: Document them. * gnu/local.mk: Add gnu/home/services/pm.scm. ( via Guix-patches via
2022-10-04doc: Mention network mask in network-route....* doc/guix.texi (Networking Setup): Mention network mask in network-route. Andrew Tropin
2022-10-04deploy: Fix error message....* guix/scripts/deploy.scm (guix-deploy): Fix error message. Andrew Tropin
2022-10-04gnu: augustus: Update to 3.2.0....* gnu/packages/games.scm (augustus): Update to 3.2.0. [inputs]: Add expat. [snippet]: Unbundle it. Drop trailing #t. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Timotej Lazar
2022-10-04gnu: emacs-lsp-mode: Update to 26c4d3e....* gnu/packages/emacs-xyz.scm (emacs-lsp-mode): Update to 26c4d3e. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> jgart
2022-10-04gnu: emacs-nov-el: Update to 0.4.0 and use gexps....* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.4.0. [arguments]: Use gexps. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Michael Rohleder
2022-10-04gnu: emacs-modus-themes: Update to 2.7.1....* gnu/packages/emacs-xyz.scm (emacs-modus-themes): Update to 2.7.1. Nicolas Goaziou
2022-10-04gnu: emacs-org-mime: Update to 0.3.2....* gnu/packages/emacs-xyz.scm (emacs-org-mime): Update to 0.3.2. Nicolas Goaziou
2022-10-04gnu: Add emacs-circadian....* gnu/packages/emacs-xyz.scm (emacs-circadian): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> kiasoc5
2022-10-03gnu: r-tximeta: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1. Ricardo Wurmus
2022-10-03gnu: r-bionero: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2. [propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork. Ricardo Wurmus
2022-10-03gnu: r-biodb: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2. Ricardo Wurmus
2022-10-03gnu: r-biocdockermanager: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1. Ricardo Wurmus
2022-10-03gnu: r-basilisk: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1. Ricardo Wurmus
2022-10-03gnu: r-bgeecall: Update to 1.12.2....* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2. Ricardo Wurmus
2022-10-03gnu: r-pathview: Update to 1.36.1....* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1. Ricardo Wurmus
2022-10-03gnu: r-delayedmatrixstats: Update to 1.18.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1. Ricardo Wurmus
2022-10-03gnu: r-scran: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1. Ricardo Wurmus
2022-10-03gnu: r-scuttle: Update to 1.6.3....* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3. Ricardo Wurmus
2022-10-03gnu: r-hdf5array: Update to 1.24.2....* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2. Ricardo Wurmus
2022-10-03gnu: r-biocpkgtools: Update to 1.14.1....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1. Ricardo Wurmus
2022-10-03gnu: r-biocviews: Update to 1.64.1....* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1. Ricardo Wurmus
2022-10-03gnu: r-bioccheck: Update to 1.32.1....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1. Ricardo Wurmus
2022-10-03gnu: r-cytoml: Update to 2.8.1....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1. Ricardo Wurmus
2022-10-03gnu: r-opencyto: Update to 2.8.4....* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4. Ricardo Wurmus
2022-10-03gnu: r-flowstats: Update to 4.8.2....* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2. Ricardo Wurmus
2022-10-03gnu: r-flowviz: Update to 1.60.2....* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2. Ricardo Wurmus
2022-10-03gnu: r-ggcyto: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1. Ricardo Wurmus
2022-10-03gnu: r-ncdfflow: Update to 2.42.1....* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1. Ricardo Wurmus
2022-10-03gnu: r-rsubread: Update to 2.10.5....* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5. Ricardo Wurmus
2022-10-03gnu: r-rgadem: Update to 2.44.1....* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1. Ricardo Wurmus
2022-10-03gnu: r-enrichplot: Update to 1.16.2....* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2. Ricardo Wurmus
2022-10-03gnu: r-dose: Update to 3.22.1....* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1. Ricardo Wurmus
2022-10-03gnu: r-residualmatrix: Update to 1.6.1....* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1. Ricardo Wurmus
2022-10-03gnu: r-ggtree: Update to 3.4.4....* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4. Ricardo Wurmus
2022-10-03gnu: r-treeio: Update to 1.20.2....* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2. Ricardo Wurmus