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2019-05-11gnu: r-regioner: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-regioner): Update to 1.16.1. Ricardo Wurmus
2019-05-11gnu: osc: Update to 0.165.0....* gnu/packages/build-tools.scm (osc): Update to 0.165.0. [source]: Use git-fetch. [arguments]: Use python3. osc_hotshot.py is gone. So, do not attempt to delete it. Rename fix-filename-and-remove-unused phase to fix-filename phase. [inputs]: Add rpm. Remove python2-urlgrabber. Replace python2-m2crypto and python2-pycurl with python-m2crypto and python-pycurl. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Jonathan Brielmaier
2019-05-11gnu: rpm: Update to 4.14.2.1....* gnu/packages/package-management.scm (rpm): Update to 4.14.2.1. [inputs]: Use python instead of python-2. [home-page]: Use HTTPS URI. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Jonathan Brielmaier
2019-05-11doc: Fix typo....* doc/guix.texi (shepherd-service): Replace 'requirements' with 'requirement'. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> Diego Nicola Barbato
2019-05-11gnu: neovim: Update to 0.3.5....* gnu/packages/vim.scm (neovim): Update to 0.3.5. [source]: Use git-fetch. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> HiPhish
2019-05-10etc: Refer to ci.guix.gnu.org in install script....* etc/guix-install.sh: Replace reference to ci.guix.info with ci.guix.gnu.org. Ricardo Wurmus
2019-05-10services: 'gc-root-service-type' now has a default value....* gnu/services.scm (gc-root-service-type)[default-value]: New field. Ludovic Courtès
2019-05-10linux-container: Improve filtering of unnecessary file systems....* gnu/system/linux-container.scm (containerized-operating-system)[user-file-systems]: Add trailing slash for the "/dev/" and "/sys/" prefixes. Ludovic Courtès
2019-05-10system: Export 'operating-system-default-essential-services'....* gnu/system.scm (essential-services): Rename to... (operating-system-default-essential-services): ... this. (<operating-system>)[essential-services]: Adjust accordingly. Ludovic Courtès
2019-05-10gnu: Go 1.11: Update to 1.11.10....* gnu/packages/golang.scm (go-1.11): Update to 1.11.10. Leo Famulari
2019-05-10gnu: emacs-auctex: Update to 12.1.2....* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 12.1.2. Nicolas Goaziou
2019-05-10gnu: emacs-debbugs: Update to 0.18....* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.18. Nicolas Goaziou
2019-05-10gnu: gnome-tweak-tool: Update to 3.28.1....Fixes <https://bugs.gnu.org/35597>. * gnu/packages/gnome.scm (gnome-tweak-tool): Deprecate and rename... (gnome-tweaks): ...to this. Update to 3.28.1. [build-system]: Use meson-build-system. [arguments]: Adjust configure flags; pass glib-or-gtk? flag; remove custom phases that are now provided by the meson-build-system; add phases "wrap" and "wrap-gi-typelib". [native-inputs]: Remove meson-for-build and ninja. [home-page]: Update. [description]: Use "Tweaks" instead of "Tweak Tool". * gnu/packages/patches/gnome-tweak-tool-search-paths.patch: Rename file... * gnu/packages/patches/gnome-tweaks-search-paths.patch: ...to this. * gnu/local.mk (dist_patch_DATA): Update patch file name. Ricardo Wurmus
2019-05-10gnu: Add r-rqc....* gnu/packages/bioconductor.scm (r-rqc): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-quasr....* gnu/packages/bioconductor.scm (r-quasr): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-rhisat2....* gnu/packages/bioconductor.scm (r-rhisat2): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-sgseq....* gnu/packages/bioconductor.scm (r-sgseq): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-xgboost....* gnu/packages/cran.scm (r-xgboost): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-citr....* gnu/packages/cran.scm (r-citr): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-refmanager....* gnu/packages/cran.scm (r-refmanager): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-ggfortify....* gnu/packages/cran.scm (r-ggfortify): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-plot3d....* gnu/packages/cran.scm (r-plot3d): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-enrichr....* gnu/packages/cran.scm (r-enrichr): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-dalex....* gnu/packages/cran.scm (r-dalex): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-rbowtie....* gnu/packages/bioconductor.scm (r-rbowtie): New variable. Ricardo Wurmus
2019-05-10gnu: Add r-iclusterplus....* gnu/packages/bioconductor.scm (r-iclusterplus): New variable. Ricardo Wurmus
2019-05-10gnu: linux-libre: Update to 5.1....* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1. (%linux-libre-hash): Update hash. (%linux-libre-5.0-patches): Rename to ... (%linux-libre-5.1-patches): ... this. (linux-libre, linux-libre-arm-generic, linux-libre-arm-veyron) (linux-libre-arm-omap2plus): Use %linux-libre-5.1-patches. (vhba-module): Move definition below the kernel packages. * gnu/packages/aux-files/linux-libre/5.0-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.0-arm.conf, gnu/packages/aux-files/linux-libre/5.0-arm64.conf, gnu/packages/aux-files/linux-libre/5.0-i686.conf, gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.1-arm-veyron.conf, gnu/packages/aux-files/linux-libre/5.1-arm.conf, gnu/packages/aux-files/linux-libre/5.1-arm64.conf, gnu/packages/aux-files/linux-libre/5.1-i686.conf, gnu/packages/aux-files/linux-libre/5.1-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly. Mark H Weaver
2019-05-10gnu: rust: Update to 1.34.1....* gnu/packages/rust.scm (rust): Update to 1.34.1. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Ivan Petkov
2019-05-10gnu: rust: Make source derivations smaller....* gnu/packages/rust.scm (rust-source-pre-1.32): Delete procedure. (rust-bootstrapped-package-pre-1.32): Delete procedure. (rust-bootstrapped-package): Remove optional keys, and return an origin. (rust-uri): New variable. (mrustc): Change native-input "rust" to use source of rust-1.19. (rust-1.19)[source]: Define package source. (rust-1.20): Use rust-bootstrapped-package. (rust-1.21): Likewise. (rust-1.22): Likewise. (rust-1.23): Likewise. (rust-1.24): Likewise. (rust-1.25): Likewise. (rust-1.26): Likewise. (rust-1.27): Likewise. (rust-1.28): Likewise. (rust-1.29): Likewise. (rust-1.30): Likewise. (rust-1.31): Likewise. (rust-1.32): Likewise. (rust-1.33): Likewise. (rust-1.34): Likewise. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Ivan Petkov
2019-05-10gnu: rust: Delete install logs and manifests....* gnu/packages/rust.scm (rust-1.20)[arguments]<#:phases>[delete-install-logs]: New phase. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Ivan Petkov
2019-05-10build/cargo-utils: Remove "src-name" parameter....* gnu/packages/gnuzilla.scm (icecat)[arguments]<#:phases> [patch-cargo-checksums]: Delete "null-file" variable. * gnu/packages/rust.scm (%cargo-reference-project-file): Delete variable. * gnu/packages/rust.scm (rust-1.19): Remove reference to "%cargo-reference-project-file". * guix/build/cargo-utils.scm (generate-checksums): Remove "src-name" parameter. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Ivan Petkov
2019-05-09gnu: gcc-4.7: Hide package....* gnu/packages/gcc.scm (gcc-4.7): Wrap in "hidden-package" expression. Ricardo Wurmus
2019-05-09gnu: emacs-dash: Update to 2.16.0....* gnu/packages/emacs-xyz.scm (emacs-dash): Update to 2.16.0. Ricardo Wurmus
2019-05-09gnu: Add guile-file-names....* gnu/packages/guile-xyz.scm (guile-file-names): New variable. Ricardo Wurmus
2019-05-09gnu: seabios: Update to 1.12.1....This is a stable release despite the missing tarball. <https://mail.coreboot.org/hyperkitty/list/seabios@seabios.org/thread/ONGRJVF3A45SAXOKBED52V2UD3YUWTRT/> * gnu/packages/firmware.scm (seabios): Update to 1.12.1. [source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice
2019-05-09gnu: man-pages: Update to 5.01....* gnu/packages/man.scm (man-pages): Update to 5.01. Tobias Geerinckx-Rice
2019-05-09gnu: emacs-sml-mode: Update to 6.9....* gnu/packages/emacs-xyz.scm (emacs-sml-mode): Update to 6.9. Tobias Geerinckx-Rice
2019-05-09gnu: cdemu-client: Update to 3.2.1....* gnu/packages/cdrom.scm (cdemu-client): Update to 3.2.1. Tobias Geerinckx-Rice
2019-05-09gnu: cdemu-daemon: Update to 3.2.2....* gnu/packages/cdrom.scm (cdemu-daemon): Update to 3.2.2. Tobias Geerinckx-Rice
2019-05-09gnu: libmirage: Update to 3.2.2....* gnu/packages/cdrom.scm (libmirage): Update to 3.2.2. Tobias Geerinckx-Rice
2019-05-09gnu: vhba-module: Update to 20190410....* gnu/packages/linux.scm (vhba-module): Update to 20190410. Tobias Geerinckx-Rice
2019-05-09gnu: cloc: Update to 1.82....* gnu/packages/code.scm (cloc): Update to 1.82. [source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice
2019-05-09services: dhcp-client: Ignore interfaces that are not ARP capable....* gnu/services/networking.scm (dhcp-client-service-type): Filter interfaces that do not support the ARP protocol. Marius Bakke
2019-05-09syscalls: Add 'arp-network-interface?'....* guix/build/syscalls.scm (IFF_NOARP): New variable. (arp-network-interface?): New public procedure. Marius Bakke
2019-05-09pull: Display 'hash guix' hint when the new and old 'guix' are different....Fixes <https://bugs.gnu.org/35601>. Reported by Diego Nicola Barbato <dnbarbato@posteo.de>. Previously we were calling (which "guix") after the new profile had been built and symlinked, so in most cases the hint would not be triggered, even though it should have been triggered. * guix/scripts/pull.scm (build-and-install)[guix-command]: New variable. Compare PROFILE/bin/guix against GUIX-COMMAND. Ludovic Courtès
2019-05-09tests: Ensure 'unshare' works before relying on it....Fixes <https://bugs.gnu.org/35642>. Reported by Josh Holland <josh@inv.alid.pw>. * tests/guix-pack-relocatable.sh: Before invoking 'unshare' at the bottom, add "if unshare -r true" condition. * tests/guix-pack.sh: Likewise. Ludovic Courtès
2019-05-09gnu: Use mirror://kernel.org in source URIs....* gnu/packages/linux.scm (bridge-utils, cpufrequtils, sbc)[source](uri): Use "mirror://kernel.org" instead of www.kernel.org directly. Marius Bakke
2019-05-09gnu: wpa_supplicant: Update to 2.8 [security fixes]....This release fixes CVE-2019-9494, CVE-2019-9495, CVE-2019-9496, CVE-2019-9497, CVE-2019-9498, CVE-2019-9499, and CVE-2019-11555. * gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.8. [source](snippet): New field. Disable D-Bus. [arguments]: Change CONFIG_TLS to use OpenSSL rather than GnuTLS. This is required by many of the new default build-time settings. [inputs]: Remove GNUTLS and LIBGCRYPT. Add OPENSSL. (wpa-supplicant)[arguments]: Remove obsolete CONFIG_CTRL_IFACE_DBUS=y. Marius Bakke
2019-05-09gnu: libtorrent-rasterbar: Update to 1.1.13....* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.13. Marius Bakke
2019-05-09gnu: leveldb: Update to 1.22....* gnu/packages/databases.scm (leveldb): Update to 1.22. Marius Bakke