| Age | Commit message (Expand) | Author |
|---|
| 2023-06-03 | gnu: r-ontologyindex: Update to 2.11.•••* gnu/packages/cran.scm (r-ontologyindex): Update to 2.11.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-performance: Update to 0.10.4.•••* gnu/packages/cran.scm (r-performance): Update to 0.10.4.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-biasedurn: Update to 2.0.10.•••* gnu/packages/cran.scm (r-biasedurn): Update to 2.0.10.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-maptools: Update to 1.1-7.•••* gnu/packages/cran.scm (r-maptools): Update to 1.1-7.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-catdap: Update to 1.3.7.•••* gnu/packages/cran.scm (r-catdap): Update to 1.3.7.
[propagated-inputs]: Add r-rcolorbrewer.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-ucminf: Update to 1.2.0.•••* gnu/packages/cran.scm (r-ucminf): Update to 1.2.0.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-sp: Update to 1.6-1.•••* gnu/packages/cran.scm (r-sp): Update to 1.6-1.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-ggrastr: Update to 1.0.2.•••* gnu/packages/cran.scm (r-ggrastr): Update to 1.0.2.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-ggpicrust2: Update to 1.7.0.•••* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.0.
[propagated-inputs]: Add r-circlize.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-rmarkdown: Update to 2.22.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.22.
[properties]: Add hints to the updater.
| Ricardo Wurmus |
| 2023-06-03 | gnu: r-rgdal: Update to 1.6-7.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.6-7.
[properties]: Add hints to the updater.
| Ricardo Wurmus |
| 2023-06-03 | gnu: Add r-consrank.•••* gnu/packages/cran.scm (r-consrank): New variable.
| Ricardo Wurmus |
| 2023-06-02 | gnu: Add r-singlet.•••* gnu/packages/bioinformatics.scm (r-singlet): New variable.
| Ricardo Wurmus |
| 2023-06-02 | gnu: Add r-rcppml/devel.•••* gnu/packages/machine-learning.scm (r-rcppml/devel): New variable.
| Ricardo Wurmus |
| 2023-06-02 | gnu: Add python-cell2cell.•••* gnu/packages/bioinformatics.scm (python-cell2cell): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| Navid Afkhami |
| 2023-06-02 | environment: Fix unbound-variable bug with '--symlink'.•••Fixes <https://issues.guix.gnu.org/63845>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
* guix/scripts/environment.scm (launch-environment/container): Reference
'evaluate-populate-directive' before calling 'call-with-container'.
| Ludovic Courtès |
| 2023-06-02 | gnu: Add coccinelle.•••* gnu/packages/patchutils.scm (coccinelle): New variable.
Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Jean-Pierre De Jesus DIAZ |
| 2023-06-02 | gnu: Add ocaml-pyml.•••* gnu/packages/ocaml.ml (ocaml-pyml): New variable.
Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Jean-Pierre De Jesus DIAZ |
| 2023-06-02 | gnu: Add ocaml-stdcompat.•••* gnu/packages/ocaml.scm (ocaml-stdcompat): New variable.
Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Jean-Pierre De Jesus DIAZ |
| 2023-06-02 | gnu: Add ocaml-parmap.•••* gnu/packages/ocaml.scm (ocaml-parmap): New variable.
Signed-off-by: Jean-Pierre De Jesus DIAZ <jean@foundationdevices.com>
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Jean-Pierre De Jesus DIAZ |
| 2023-06-02 | gnu: Add tmux-plugin-mem-cpu-load.•••* gnu/packages/tmux.scm (tmux-plugin-mem-cpu-load): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-06-02 | services: Error in MODIFY-SERVICES when services don't exist•••This patch causes MODIFY-SERVICES to raise an error if a reference is made to
a service which isn't in its service list. This it to help users notice if
they have an invalid rule, which is currently silently ignored.
* gnu/services.scm (%delete-service): new procedure
(%apply-clauses): new syntax rule
(%modify-service): remove syntax rule
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Brian Cully |
| 2023-06-02 | tests: Check for service existence in MODIFY-SERVICES•••* tests/services.scm ("modify-services: delete non-existing service")
("modify-services: change value for non-existing service"): New tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Brian Cully |
| 2023-06-02 | tests: Add tests for MODIFY-SERVICES procedure•••* tests/services.scm ("modify-services: do nothing")
("modify-services: delete service")
("modify-services: change value"): New tests.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Brian Cully |
| 2023-06-02 | gnu: cuirass: Update to b825967.•••Fixes a regression introduced with the guile-squee update in
63e5975cac15102e35032d15fcd90e43d5610fa4 (which brings
non-blocking/asynchronous 'exec-query') whereby Cuirass would call
'exec-query' whereby another command was being processed.
* gnu/packages/ci.scm (cuirass): Update to b825967.
| Ludovic Courtès |
| 2023-06-02 | gnu: python-ipython-documentation: Update dependencies.•••* gnu/packages/python-xyz.scm (python-ipython-documentation)
[native-inputs]: Add python-ipykernel.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-06-02 | gnu: python-ipython-documentation: Remove patches.•••* gnu/packages/python-xyz.scm (python-ipython-documentation)[source]:
Remove upstreamed patches.
* gnu/packages/patches/python-ipython-documentation-chars.patch,
gnu/packages/patches/python-ipython-documentation-repro.patch:
Delete files.
* gnu/local.mk: Remove files.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-06-02 | gnu: python-docrepr: Fix tests.•••* gnu/packages/patches/python-docrepr-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it here.
* gnu/packages/documentation.scm (python-docrepr)[source]<patches>: Use
it here.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2023-06-02 | gnu: cpp-mustache: Update to 5.0 to fix build.•••* gnu/packages/cpp.scm (cpp-mustache): Update to 5.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Denis 'GNUtoo' Carikli |
| 2023-06-02 | gnu: gcc-boot0: Do not use 'coreutils-boot0' on GNU/Hurd.•••Fixes <https://issues.guix.gnu.org/63789>.
Reported by Janneke Nieuwenhuizen <janneke@gnu.org>.
* gnu/packages/commencement.scm (gcc-boot0)[source]: Use
'%bootstrap-coreutils&co' when on GNU/Hurd.
| Ludovic Courtès |
| 2023-06-02 | read-print: Add 'package/inherit' special form.•••* guix/read-print.scm (%special-forms): Add 'package/inherit'.
| Ludovic Courtès |
| 2023-06-02 | ci: Reify the timestamps of evaluations.•••* guix/ci.scm (<evaluation>)[start-time, checkout-time,
completion-time]: New fields.
| Ludovic Courtès |
| 2023-06-02 | gnu: Add pcsc-cyberjack.•••* gnu/packages/security-token.scm (pcsc-cyberjack): New variable.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
| Arvid Krein |
| 2023-06-02 | gnu: kicad: Update to 7.0.5.•••* gnu/packages/engineering.scm (kicad): Update to 7.0.5.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Peter Polidoro |
| 2023-06-02 | gnu: r-tcgabiolinks: Update to 2.28.2.•••* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.28.2.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-biocthis: Update to 1.10.1.•••* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-basilisk-utils: Update to 1.12.1.•••* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-megadepth: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.10.0.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-s4arrays: Update to 1.0.4.•••* gnu/packages/bioconductor.scm (r-s4arrays): Update to 1.0.4.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-biocviews: Update to 1.68.1.•••* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.68.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-rsubread: Update to 2.14.2.•••* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.14.2.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-treeio: Update to 1.24.1.•••* gnu/packages/bioconductor.scm (r-treeio): Update to 1.24.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-apeglm: Update to 1.22.1.•••* gnu/packages/bioconductor.scm (r-apeglm): Update to 1.22.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-zellkonverter: Update to 1.10.1.•••* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.10.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-scmap: Update to 1.22.3.•••* gnu/packages/bioconductor.scm (r-scmap): Update to 1.22.3.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-limma: Update to 3.56.1.•••* gnu/packages/bioconductor.scm (r-limma): Update to 3.56.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-edger: Update to 3.42.4.•••* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.4.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-biostrings: Update to 2.68.1.•••* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.68.1.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-biocparallel: Update to 1.34.2.•••* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.2.
| Ricardo Wurmus |
| 2023-06-02 | gnu: r-densvis: Update to 1.10.2.•••* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.2.
| Ricardo Wurmus |
