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2019-01-09gnu: Add r-ontologyindex....* gnu/packages/cran.scm (r-ontologyindex): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-rapidjsonr....* gnu/packages/cran.scm (r-rapidjsonr): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-pixmap....* gnu/packages/cran.scm (r-pixmap): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-strucchange....* gnu/packages/cran.scm (r-strucchange): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-als....* gnu/packages/cran.scm (r-als): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-chemometricswithr....* gnu/packages/cran.scm (r-chemometricswithr): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-iso....* gnu/packages/cran.scm (r-iso): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-nnls....* gnu/packages/cran.scm (r-nnls): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-kohonen....* gnu/packages/cran.scm (r-kohonen): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-grimport....* gnu/packages/cran.scm (r-grimport): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-tractor-base....* gnu/packages/cran.scm (r-tractor-base): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-reportr....* gnu/packages/cran.scm (r-reportr): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-ore....* gnu/packages/cran.scm (r-ore): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-shades....* gnu/packages/cran.scm (r-shades): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-rnifti....* gnu/packages/cran.scm (r-rnifti): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-tfmpvalue....* gnu/packages/cran.scm (r-tfmpvalue): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-splitstackshape....* gnu/packages/cran.scm (r-splitstackshape): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-lassopv....* gnu/packages/cran.scm (r-lassopv): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-flare....* gnu/packages/cran.scm (r-flare): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-vbsr....* gnu/packages/cran.scm (r-vbsr): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-rpostgresql....* gnu/packages/cran.scm (r-rpostgresql): New variable. Ricardo Wurmus
2019-01-09gnu: Add r-rspectra....* gnu/packages/cran.scm (r-rspectra): New variable. Ricardo Wurmus
2019-01-09build-system/asdf: 'package-with-build-system' accesses inputs lazily....Fixes a bug whereby we would, at the top-level (while evaluation lisp.scm package definitions), attempt to access package inputs. Because of circular dependencies, this could lead to unbound variables as reported by Arun Isaac <arunisaac@systemreboot.net> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=33801#56>. * guix/build-system/asdf.scm (package-with-build-system)[transform] (new-propagated-inputs): Turn into a procedure. Adjust user accordingly. Ludovic Courtès
2019-01-09self: Drop support for Guix < 0.15 on Guile 2.0....* guix/self.scm (false-if-wrong-guile, package-for-guile): Remove. (specification->package): Remove "guile2.0-" variants. (compiled-guix): #:guile-for-build defaults to (default-guile). Use 'specification->package' instead of 'package-for-guile'. (guile-for-build): Remove. (guix-derivation): Use 'default-guile' instead of 'guile-for-build'. Check whether we're running on Guile 2.0 with PULL-VERSION < 1. Ludovic Courtès
2019-01-09Remove most uses of the _IO*F constants....These constants, for use with 'setvbuf', were deprecated in Guile 2.2 and disappeared in Guile 3.0. Here we keep these constants in build-side code where removing them is not feasible. * guix/build/download-nar.scm (download-nar): Adjust 'setvbuf' calls to the Guile 2.2+ API. * guix/build/download.scm (open-socket-for-uri): Likewise. (open-connection-for-uri, url-fetch): Likewise. * guix/build/make-bootstrap.scm (make-stripped-libc): Likewise. * guix/build/union.scm (setvbuf) [guile-2.0]: New conditional wrapper. (union-build): Adjust to new API. * guix/ftp-client.scm (ftp-open, ftp-list, ftp-retr): Likewise. * guix/http-client.scm (http-fetch): Likewise. * guix/inferior.scm (proxy): Likewise. * guix/scripts/substitute.scm (fetch, http-multiple-get): Likewise. * guix/self.scm (compiled-modules): Likewise. * guix/ssh.scm (remote-daemon-channel, store-import-channel) (store-export-channel): Likewise. * guix/ui.scm (initialize-guix): Likewise. * tests/publish.scm (http-get-port): Likewise. * guix/store.scm (%newlines): Adjust comment. Ludovic Courtès
2019-01-09download: Remove Guile 2.0 workaround....* guix/build/download.scm: Remove Guile 2.0 workaround. Ludovic Courtès
2019-01-09maint: Remove 'cond-expand' forms for Guile 2.0....Note: Leave 'cond-expand' forms used in the build-side modules that can run on %BOOTSTRAP-GUILE, which is currently Guile 2.0. * guix/build/compile.scm: Move 'use-modules' clause from 'cond-expand' to 'define-module' form. (%default-optimizations): Remove 'cond-expand'. * guix/build/download.scm (tls-wrap): Remove 'cond-expand'. * guix/build/syscalls.scm: Remove 'cond-expand' form around '%set-automatic-finalization-enabled?!' and 'without-automatic-finalization'. * guix/inferior.scm (port->inferior): Remove 'cond-expand'. * guix/scripts/pack.scm (wrapped-package)[build]: Remove 'cond-expand'. * guix/status.scm (build-event-output-port): Remove 'cond-expand'. * guix/store.scm (open-inet-socket): Remove 'cond-expand'. * guix/ui.scm (install-locale): Remove 'cond-expand'. * tests/status.scm ("current-build-output-port, UTF-8 + garbage"): Remove 'cond-expand'. * tests/store.scm ("current-build-output-port, UTF-8 + garbage"): Remove 'cond-expand'. Ludovic Courtès
2019-01-09build: Require Guile 2.2....* configure.ac: Require Guile 2.2. * README: Adjust accordingly. * doc/guix.texi (Requirements): Likewise. * gnu/packages/package-management.scm (guile2.0-guix): Deprecate. (guix-minimal): Inherit from GUIX, not from GUILE2.0-GUIX. Ludovic Courtès
2019-01-08doc: Recommend using the installer script....* doc/guix.texi (Installation): Make it clear that the installer script is the recommended, easy way to install Guix. Ricardo Wurmus
2019-01-08pull: Document '--system'....Fixes <https://bugs.gnu.org/34010>. Reported by Alex Kost <alezost@gmail.com>. This is a followup to 5923102f7b58f0a0120926ec5b81ed48b26a188e. * guix/scripts/pull.scm (show-help): Add '--system'. Ludovic Courtès
2019-01-08self: Compress Info files....Fixes <https://bugs.gnu.org/33993>. Reported by Adonay Felipe Nogueira <adfeno@hyperbola.info>. * guix/self.scm (info-manual): Compress Info files. Ludovic Courtès
2019-01-08build-self: Spin only on TTYs....* build-aux/build-self.scm (build-program): Spin only when 'isatty?' returns true. Ludovic Courtès
2019-01-08gnu: dvdisaster: Run regression tests....* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Remove #:tests? argument. Add 'check' phase. Eric Bavier
2019-01-08gnu: dvdisaster: Install desktop file....* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add 'install-desktop phase. Eric Bavier
2019-01-08gnu: prosody: Update to 0.11.1....* gnu/packages/messaging.scm (prosody): Update to 0.11.1. [arguments]: Replace "Makefile" with "GNUmakefile". Change "5.1" to "5.2". Explain why there are no tests. [inputs]: Replace lua-5.1, lua5.1-bitop, lua5.1-expat, lua5.1-socket, lua5.1-filesystem, lua5.1-sec with lua-5.2, lua5.2-bitop, lua5.2-expat, lua5.2-socket, lua5.2-filesystem, lua5.2-sec. Clément Lassieur
2019-01-08gnu: Add lua5.2-sec....* gnu/packages/lua.scm (lua5.2-sec): New variable. (make-lua-sec): New procedure. (lua5.1-sec, lua5.2-sec): Call it. Clément Lassieur
2019-01-08gnu: Add lua-filesystem and lua5.2-filesystem....* gnu/packages/lua.scm (lua-filesystem, lua5.2-filesystem): New variables. (make-lua-filesystem): New procedure. (lua-filesystem, lua5.1-filesystem, lua5.2-filesystem): Call it. Clément Lassieur
2019-01-08gnu: Add lua5.2-socket....* gnu/packages/lua.scm (lua5.2-socket): New variable. (make-lua-socket): New procedure. (lua5.1-socket, lua5.2-socket): Call it. Clément Lassieur
2019-01-08gnu: Add lua5.2-expat....* gnu/packages/lua.scm (lua5.2-expat): New variable. (make-lua-expat): New procedure. (lua5.1-expat, lua5.2-expat): Call it. Clément Lassieur
2019-01-08gnu: criu: Update to 3.11....* gnu/packages/virtualization.scm (criu): Update to 3.11. [arguments]: Add custom phase to patch python calls. Efraim Flashner
2019-01-08gnu: criu: Fix building on armhf-linux....* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm version in the Makefile. Efraim Flashner
2019-01-08gnu: gajim-omemo: Update to 2.6.26....* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26. Clément Lassieur
2019-01-08gnu: gajim: Update to 1.1.1....* gnu/packages/messaging.scm (gajim): Update to 1.1.1. [arguments]: Replace #:test-target with a 'check' phase. Clément Lassieur
2019-01-08gnu: tor: Update to 0.3.4.10....* gnu/packages/tor.scm (tor): Update to 0.3.4.10. Tobias Geerinckx-Rice
2019-01-08gnu: privoxy: Update to 3.0.28....* gnu/packages/tor.scm (privoxy): Update to 3.0.28. Tobias Geerinckx-Rice
2019-01-07gexp: 'gexp->script' does not emit load-path expression when unnecessary....This removes two elements from %LOAD-PATH and %LOAD-COMPILED-PATH of the 'guix' command and thus further reduces the number of 'stat' calls it makes. * guix/gexp.scm (load-path-expression): Return #f when MODULES and EXTENSIONS are both empty. (gexp->script): Don't emit anything when SET-LOAD-PATH is #f. Ludovic Courtès
2019-01-07self: Move all modules into a single directory....This halves the number of elements in %LOAD-PATH and %LOAD-COMPILED-PATH and halves the number of 'stat' calls as reported by: env -i $(type -P guix) build -e '(@ (gnu packages base) coreutils)' -nd * guix/self.scm (node-source+compiled, guile-module-union): New procedures. (guix-command): Remove 'compiled-modules' parameter. Remove 'source-directories' and 'object-directories' variables and add 'module-directory'. Change command so that it adds nothing but MODULE-DIRECTORY to %LOAD-PATH and %LOAD-COMPILED-PATH. (whole-package): Remove #:compiled-modules. Assume MODULES contains 'share/guile/site' and 'lib/guile' and adjust code accordingly. (compiled-guix): When PULL-VERSION is 1, use 'node-source+compiled' only. Remove #:compiled-modules argument to 'whole-package'. * guix/channels.scm (whole-package-for-legacy): Add 'module+compiled' and pass it to 'whole-package'. Ludovic Courtès
2019-01-07gnu: libnet: Update to 1.2-rc3....* gnu/packages/networking.scm (libnet): Update to 1.2-rc3. [source]: Use git-fetch. Rutger Helling
2019-01-07import: opam: Parse comments....* guix/import/opam.scm: Add comment support in parser. Julien Lepiller
2019-01-07gnu: ocaml-graph: Add upstream-name....* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name. Julien Lepiller