| Age | Commit message (Expand) | Author |
|---|
| 2020-06-11 | gnu: r-fitdistrplus: Update to 1.1-1.•••* gnu/packages/cran.scm (r-fitdistrplus): Update to 1.1-1.
[propagated-inputs]: Remove r-npsurv.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-sp: Update to 1.4-2.•••* gnu/packages/cran.scm (r-sp): Update to 1.4-2.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-ggally: Update to 2.0.0.•••* gnu/packages/cran.scm (r-ggally): Update to 2.0.0.
[propagated-inputs]: Add r-lifecycle and r-scales.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-getoptlong: Update to 1.0.0.•••* gnu/packages/cran.scm (r-getoptlong): Update to 1.0.0.
[propagated-inputs]: Add r-crayon.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-globaloptions: Update to 0.1.2.•••* gnu/packages/cran.scm (r-globaloptions): Update to 0.1.2.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-pkgload: Update to 1.1.0.•••* gnu/packages/cran.scm (r-pkgload): Update to 1.1.0.
[propagated-inputs]: Add r-cli and r-crayon.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-glue: Update to 1.4.1.•••* gnu/packages/cran.scm (r-glue): Update to 1.4.1.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-ape: Update to 5.4.•••* gnu/packages/cran.scm (r-ape): Update to 5.4.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-haven: Update to 2.3.1.•••* gnu/packages/cran.scm (r-haven): Update to 2.3.1.
[native-inputs]: Add r-knitr.
[propagated-inputs]: Add r-vctrs.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-d3r: Update to 0.9.0.•••* gnu/packages/cran.scm (r-d3r): Update to 0.9.0.
[propagated-inputs]: Add r-rlang.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-servr: Update to 0.17.•••* gnu/packages/cran.scm (r-servr): Update to 0.17.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-httpuv: Update to 1.5.4.•••* gnu/packages/cran.scm (r-httpuv): Update to 1.5.4.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-modelr: Update to 0.1.8.•••* gnu/packages/cran.scm (r-modelr): Update to 0.1.8.
[propagated-inputs]: Remove r-dplyr; add r-vctrs.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-ellipsis: Update to 0.3.1.•••* gnu/packages/cran.scm (r-ellipsis): Update to 0.3.1.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-ggpmisc: Update to 0.3.5.•••* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.5.
[propagated-inputs]: Add r-magrittr, r-rlang, r-scales, and r-stringr.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-lubridate: Update to 1.7.9.•••* gnu/packages/statistics.scm (r-lubridate): Update to 1.7.9.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-sn: Update to 1.6-2.•••* gnu/packages/statistics.scm (r-sn): Update to 1.6-2.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-mnormt: Update to 2.0.0.•••* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.0.
[propagated-inputs]: Add r-tmvnsim.
| Ricardo Wurmus |
| 2020-06-11 | gnu: Add r-tmvnsim.•••* gnu/packages/statistics.scm (r-tmvnsim): New variable.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-car: Update to 3.0-8.•••* gnu/packages/statistics.scm (r-car): Update to 3.0-8.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-cardata: Update to 3.0-4.•••* gnu/packages/statistics.scm (r-cardata): Update to 3.0-4.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-tidyr: Update to 1.1.0.•••* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.0.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-mvtnorm: Update to 1.1-1.•••* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.1-1.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-glmnet: Update to 4.0.•••* gnu/packages/statistics.scm (r-glmnet): Update to 4.0.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-rmarkdown: Update to 2.2.•••* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.2.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-rcpparmadillo: Update to 0.9.900.1.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.1.0.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-backports: Update to 1.1.7.•••* gnu/packages/statistics.scm (r-backports): Update to 1.1.7.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-dbplyr: Update to 1.4.4.•••* gnu/packages/statistics.scm (r-dbplyr): Update to 1.4.4.
[propagated-inputs]: Add r-blob and r-magrittr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-dplyr: Update to 1.0.0.•••* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.0.
[propagated-inputs]: Remove r-assertthat, r-bh, r-pkgconfig, r-plogr, and
r-rcpp; add r-generics, r-lifecycle, and r-vctrs.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-ggplot2: Update to 3.3.1.•••* gnu/packages/statistics.scm (r-ggplot2): Update to 3.3.1.
[native-inputs]: Add r-knitr.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-nlme: Update to 3.1-148.•••* gnu/packages/statistics.scm (r-nlme): Update to 3.1-148.
| Ricardo Wurmus |
| 2020-06-11 | gnu: r-foreign: Update to 0.8-80.•••* gnu/packages/statistics.scm (r-foreign): Update to 0.8-80.
| Ricardo Wurmus |
| 2020-06-11 | gnu: php: Update to 7.4.7.•••* gnu/packages/php.scm (php): Update to 7.4.7.
| Julien Lepiller |
| 2020-06-11 | gnu: sameboy: Update to 0.13.2.•••* gnu/packages/emulators.scm (sameboy): Update to 0.13.2.
[arguments]: Specify NATIVE_CC to avoid requiring the `cc' program.
| Jakub Kądziołka |
| 2020-06-11 | gnu: java-jakarta-oro: Use a mirror URL.•••* gnu/packages/java.scm (java-jakarta-oro)[source]: Download using an
apache mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: java-commons-httpclient: Use a mirror URL.•••* gnu/packages/java.scm (java-commons-httpclient)[source]: Use an apache
mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: ant-bootstrap: Use a mirror URL.•••* gnu/packages/java.scm (ant-bootstrap)[source]: Use an apache mirror://
URL.
| Efraim Flashner |
| 2020-06-11 | gnu: maven-artifact: Use a mirror URL.•••* gnu/packages/maven.scm (maven-artifact)[source]: Use an apache
mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: maven-wagon-provider-api: Use a mirror URL.•••* gnu/packages/maven.scm (maven-wagon-provider-api)[source]: Use an
apache mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: maven-plugin-annotations: Use a mirror URL.•••* gnu/packages/maven.scm (maven-plugin-annotations)[source]: Use an
apache mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: maven-shared-utils: Use a mirror URL.•••* gnu/packages/maven.scm (maven-shared-utils)[source]: Use an apache
mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: serf: Use a mirror URL.•••* gnu/packages/web.scm (serf)[source]: Use an apache mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: subversion: Use a mirror URL.•••* gnu/packages/version-control.scm (subversion)[source]: Use an apache
mirror:// URL.
| Efraim Flashner |
| 2020-06-11 | gnu: lyx: Use qt-build-system.•••* gnu/packages/tex.scm (lyx)[build-system]: Switch to qt-build-system.
[arguments]: Remove imported modules. Remove custom 'wrap-qt phase.
| Efraim Flashner |
| 2020-06-11 | gnu: lyx: Don't install to custom directory.•••* gnu/packages/tex.scm (lyx)[arguments]: Adjust configure-flags to not
add the version to the binary's suffix. Remove custom
'patch-desktop-file, 'setenv-check and 'install-symlink phases.
| Efraim Flashner |
| 2020-06-11 | gnu: lyx: Update to 2.3.5.1.•••* gnu/packages/tex.scm (lyx): Update to 2.3.5.1.
[arguments]: Remove 'fix-compilation-with-boost-1.69 phase. In
'patch-python phase patch more files, substitute with python3. Split
'setenv-check and create empty file after 'unpack.
| Efraim Flashner |
| 2020-06-11 | gnu: lyx: Wrap binary.••• Fixes <https://bugs.gnu.org/37147>.
* gnu/packages/tex.scm (lyx)[arguments]: Import qt-utils. Add phase to
wrap the lyx2.3 binary.
| Efraim Flashner |
| 2020-06-10 | database: separate transaction-handling and retry-handling.•••Previously call-with-transaction would both retry when SQLITE_BUSY errors were
thrown and do what its name suggested (start and rollback/commit a
transaction). This changes it to do only what its name implies, which
simplifies its implementation. Retrying is provided by the new
call-with-SQLITE_BUSY-retrying procedure.
* guix/store/database.scm (call-with-transaction): no longer restarts, new
#:restartable? argument controls whether "begin" or "begin immediate" is
used.
(call-with-SQLITE_BUSY-retrying, call-with-retrying-transaction,
call-with-retrying-savepoint): new procedures.
(register-items): use call-with-retrying-transaction to preserve old
behavior.
* .dir-locals.el (call-with-retrying-transaction,
call-with-retrying-savepoint): add indentation information.
| Caleb Ristvedt |
| 2020-06-10 | database: ensure update-or-insert is run within a transaction•••update-or-insert can break if an insert occurs between when it decides whether
to update or insert and when it actually performs that operation. Putting the
check and the update/insert operation in the same transaction ensures that the
update/insert will only succeed if no other write has occurred in the middle.
* guix/store/database.scm (call-with-savepoint): new procedure.
(update-or-insert): use call-with-savepoint to ensure the read and the
insert/update occur within the same transaction.
| Caleb Ristvedt |
| 2020-06-10 | database: rewrite query procedures in terms of with-statement.•••Most of our queries would fail to finalize their statements properly if sqlite
returned an error during their execution. This resolves that, and also makes
them somewhat more concise as a side-effect.
This also makes some small changes to improve certain queries where behavior
was strange or overly verbose.
* guix/store/database.scm (call-with-statement): new procedure.
(with-statement): new macro.
(last-insert-row-id, path-id, update-or-insert, add-references): rewrite to
use with-statement.
(update-or-insert): factor last-insert-row-id out of the end of both
branches.
(add-references): remove pointless last-insert-row-id call.
* .dir-locals.el (with-statement): add indenting information.
| Caleb Ristvedt |
