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2018-03-03services: mysql: Add a default-value to the mysql-service-type.•••* gnu/services/databases.scm (mysql-service-type)[default-value]: Set to (mysql-configuration). Christopher Baines
2018-03-03services: postgresql: Add a default-value to the postgresql-service-type.•••* gnu/packages/databases.scm (<postgresql-configuration>) [config-file,data-directory]: Add default. (postgresql-service-type)[default-value]: Set to (postgresql-configuration). Christopher Baines
2018-03-03linux-modules: Add module-aliases.•••* gnu/build/linux-modules.scm (module-aliases): New variable. Danny Milosavljevic
2018-03-03gnu: tor: Update to 0.3.2.10 [security fixes].•••This release fixes TROVE-2018-001 (also tracked as CVE-2018-0490), TROVE-2018-002 (CVE-2018-049), and TROVEs-2018-00{3,4} as well. * gnu/packages/tor.scm (tor): Update to 0.3.2.10. Tobias Geerinckx-Rice
2018-03-03gnu: Add dropseq-tools.•••* gnu/packages/bioinformatics.scm (dropseq-tools): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-picard-2.10.3.•••* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-htsjdk-2.10.1.•••* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-htsjdk-latest.•••* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-alignment-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-phylo-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-core-4.0.•••* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-alignment.•••* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-phylo.•••* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-forester-1.005.•••* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-forester.•••* gnu/packages/bioinformatics.scm (java-forester): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-openchart2.•••* gnu/packages/java.scm (java-openchart2): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-core.•••* gnu/packages/bioinformatics.scm (java-biojava-core): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-jdistlib.•••* gnu/packages/statistics.scm (java-jdistlib): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-jtransforms.•••* gnu/packages/algebra.scm (java-jtransforms): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-jlargearrays.•••* gnu/packages/algebra.scm (java-jlargearrays): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-la4j.•••* gnu/packages/algebra.scm (java-la4j): New variable. Ricardo Wurmus
2018-03-03gnu: Add fastqc.•••* gnu/packages/bioinformatics.scm (fastqc): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-cisd-jhdf5.•••* gnu/packages/java.scm (java-cisd-jhdf5): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-cisd-args4j.•••* gnu/packages/java.scm (java-cisd-args4j): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-cisd-base.•••* gnu/packages/java.scm (java-cisd-base): New variable. Ricardo Wurmus
2018-03-03gnu: Add texlive-fonts-iwona.•••* gnu/packages/tex.scm (texlive-fonts-iwona): New variable. Ricardo Wurmus
2018-03-03services: messaging: Prosody config supports file-like objects.•••* doc/guix.texi (Messaging Services): Update accordingly. * gnu/services/configuration.scm (serialize-configuration, serialize-maybe-stem, serialize-package): Return strings or string-valued gexps (these procedures were only used for their side-effects). * gnu/services/messaging.scm (serialize-field, serialize-field-list, enclose-quotes, serialize-raw-content, serialize-ssl-configuration, serialize-virtualhost-configuration-list, serialize-int-component-configuration-list, serialize-ext-component-configuration-list, serialize-virtualhost-configuration, serialize-int-component-configuration, serialize-ext-component-configuration, serialize-prosody-configuration): Return strings or string-valued gexps and stop printing. (prosody-activation): Use SERIALIZE-PROSODY-CONFIGURATION's return value with MIXED-TEXT-FILE instead of using its output with PLAIN-FILE. (serialize-non-negative-integer, serialize-non-negative-integer-list): Convert numbers to strings. (file-object?, serialize-file-object, file-object-list?, serialize-file-object-list): New procedures. (ssl-configuration)[capath, cafile], (prosody-configuration)[plugin-paths, groups-file]: Replace FILE-NAME with FILE-OBJECT. * guix/gexp.scm (file-like?): New exported procedure. Clément Lassieur
2018-03-03gnu: dictionaries: Add copyright line.•••* gnu/packages/dictionaries.scm: Add copyright line. Nicolas Goaziou
2018-03-03gnu: wireshark: Update to 2.4.5.•••* gnu/packages/networking.scm (wireshark): Update to 2.4.5. Nicolas Goaziou
2018-03-03gnu: grammalecte: Update to 0.6.2.•••* gnu/packages/dictionaries.scm (grammalecte): Update to 0.6.2. [arguments]: Remove. Nicolas Goaziou
2018-03-03gnu: Add ruby-iruby.•••* gnu/packages/ruby.scm (ruby-iruby): New variable. Christopher Baines
2018-03-03gnu: Add ruby-mimemagic.•••* gnu/packages/ruby.scm (ruby-mimemagic): New variable. Christopher Baines
2018-03-03gnu: Add ruby-data_uri.•••* gnu/packages/ruby.scm (ruby-data_uri): New variable. Christopher Baines
2018-03-03gnu: Add ruby-cztop.•••* gnu/packages/ruby.scm (ruby-cztop): New variable. Christopher Baines
2018-03-03gnu: Add ruby-czmq-ffi-gen.•••* gnu/packages/ruby.scm (ruby-czmq-ffi-gen): New variable. Christopher Baines
2018-03-03gnu: Add ruby-bond.•••* gnu/packages/ruby.scm (ruby-bond): New variable. Christopher Baines
2018-03-03gnu: Add ruby-bacon-bits.•••* gnu/packages/ruby.scm (ruby-bacon-bits): New variable. Christopher Baines
2018-03-03gnu: Add ruby-mocha-on-bacon.•••* gnu/packages/ruby.scm (ruby-mocha-on-bacon): New variable. Christopher Baines
2018-03-03gnu: networking: Add czmq.•••* gnu/packages/networking.scm (czmq): New variable. Christopher Baines
2018-03-03gnu: ghc-refact: Fix typo in description.•••* gnu/packages/haskell.scm (ghc-refact)[description]: Fix typo. Tobias Geerinckx-Rice
2018-03-03gnu: quagga: Update to 1.2.4.•••* gnu/packages/networking.scm (quagga): Update to 1.2.4. Tobias Geerinckx-Rice
2018-03-03gnu: conky: Remove redundant MKDIR-P.•••* gnu/packages/conky.scm (conky)[arguments]: Remove redundant MKDIR-P. Tobias Geerinckx-Rice
2018-03-03gnu: sslh: Update to 1.19c.•••* gnu/packages/networking.scm (sslh): Update to 1.19c. Tobias Geerinckx-Rice
2018-03-03gnu: wv: Edit description.•••Wv is still unmaintained – this just makes it more obvious. * gnu/packages/wv.scm (wv)[description]: Mention the product versions in addition to internal file format ones. Align more closely with the upstream description. Tobias Geerinckx-Rice
2018-03-03gnu: libseccomp: Update to 2.3.3.•••* gnu/packages/linux.scm (libseccomp): Update to 2.3.3. Tobias Geerinckx-Rice
2018-03-03gnu: hdparm: Update to 9.54.•••* gnu/packages/linux.scm (hdparm): Update to 9.54. Tobias Geerinckx-Rice
2018-03-03gnu: sdl2: Update to 2.0.8.•••* gnu/packages/sdl.scm (sdl2): Update to 2.0.8. Tobias Geerinckx-Rice
2018-03-03gnu: r-httpuv: Update to 1.3.6.2.•••* gnu/packages/web.scm (r-httpuv): Update to 1.3.6.2. Ricardo Wurmus
2018-03-03gnu: r-dbi: Update to 0.8.•••* gnu/packages/statistics.scm (r-dbi): Update to 0.8. Ricardo Wurmus
2018-03-03gnu: r-performanceanalytics: Update to 1.5.2.•••* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2. [propagated-inputs]: Add r-quadprog. [native-inputs]: Remove gfortran. Ricardo Wurmus
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