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This is a follow-up of c311147bd16aa0e5746d9cbf31502f5fd61e470c.
* gnu/services/databases.scm (<postgresql-role-configuration>)[host]: Set to
"/tmp" which the default Postgresql socket directory.
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* gnu/services/databases.scm (mysql-configuration): Add extra-environment
(mysql-service): Use #:log-file and #:environment-variables
* doc/guix.texi: Document it.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
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* gnu/packages/cran.scm (r-randomforestsrc): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* po/guix/LINGUAS: Add 'sk'.
* po/guix/sk.po: New file.
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* gnu/packages/vpn.scm (openconnect-sso): Update to 0.7.2.
[arguments]: Remove 'adjust-package-version-requirements phase.
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* gnu/packages/cran.scm (r-hmm): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/python-web.scm (python-tinycss2)[source]: Fetch from git
repository to include tests.
[arguments]: Build from source with flit.
[native-inputs]: Add python-flit, python-pytest, python-pytest-cov,
python-pytest-flake8, and python-pytest-isort.
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* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 7.6.3.
[propagated-inputs]: Add python-ipython, python-jupyterlab-widgets, and
python-nbformat.
[native-inputs]: Remove python-nose; add python-mock and ptyhon-pytest-cov.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Remove python-argon2-cffi, python-ipykernel, and python-terminado.
[native-inputs]: Remove python-certifi and python-nose.
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* gnu/packages/jupyter.scm (python-jupyterlab-widgets): New variable.
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* gnu/packages/jupyter.scm (python-jupyter-packaging): New variable.
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* gnu/packages/python-xyz.scm (python-deprecation): New variable.
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* gnu/packages/check.scm (python-testpath): Update to 0.4.4.
[arguments]: Build the package as intended with flit.
[native-inputs]: Add python-flit.
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* gnu/packages/python-xyz.scm (python-flit): Update to 3.2.0.
[source]: Fetch from git repository to include flit_core.
[arguments]: Add phases to bootstrap the build.
[propagated-inputs]: Add python-pytoml and python-toml.
[native-inputs]: Add python-docutils, python-responses,
python-pygments-github-lexers, python-pytest, python-pytest-cov,
python-sphinx, python-sphinxcontrib-github-alt, and python-testpath.
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* gnu/packages/sphinx.scm (python-sphinxcontrib-github-alt): New variable.
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* gnu/packages/python-web.scm (python-requests-unixsocket): New variable.
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* gnu/packages/python-xyz.scm (python-pygments-github-lexers): New variable.
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* gnu/packages/python-build.scm (python-pytoml): New variable.
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* gnu/packages/python-xyz.scm (python2-ipykernel): Remove variable.
(python-ipykernel)[properties]: Remove python2-variant.
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* gnu/packages/python-xyz.scm (python2-jupyter-console): Remove variable.
(python-jupyter-console)[properties]: Remove python2-variant.
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* gnu/packages/python-xyz.scm (python2-jupyter-core): Remove variable.
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* gnu/packages/python-xyz.scm (python2-ipyparallel): Remove variable.
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* gnu/packages/python-xyz.scm (python2-matplotlib-documentation): Remove variable.
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* gnu/packages/python-xyz.scm (python-nbformat): Update to 5.1.3.
[arguments]: Remove to enable tests.
[native-inputs]: Add python-pytest.
[properties]: Add python2-variant.
(python2-nbformat): Keep at version 4.4.0; override version and source field.
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* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.0.7.
[arguments]: Remove configure flags, enable tests, override check phase.
[propagated-inputs]: Add python-defusedxml, python-nbclient,
python-pandocfilters, python-jupyterlab-pygments, and python-testpath.
[properties]: Add python2-variant.
(python2-nbconvert): Override version, source, arguments, and
propagated-inputs.
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* gnu/packages/jupyter.scm (python-nbclient): New variable.
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* gnu/packages/jupyter.scm (python-jupyterlab-pygments): New variable.
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* gnu/packages/python-xyz.scm (python-nest-asyncio): New variable.
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* gnu/packages/python-xyz.scm (python-notebook)[propagated-inputs]: Add
python-argon2-cffi, python-ipykernel, python-ipython-genutils, python-jinja2,
python-jupyter-client, python-pyzmq, python-tornado-6, and python-traitlets.
[native-inputs]: Remove python-nose and python-sphinx; add python-coverage,
python-nbval, python-pytest, python-pytest-cov, and
python-requests-unixsocket.
[arguments]: Use pytest instead of nosetests.
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* gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0.
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* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]:
Add python-argon2-cffi and python-terminado.
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* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3.
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* gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12.
[propagated-inputs]: Add python-dateutil and python-tornado-6.
[native-inputs]: Add python-pytest.
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* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.7.1.
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* gnu/packages/python-web.scm (python-terminado): Update to 0.9.4.
[propagated-inputs]: Replace python-tornado with python-tornado-6.
[native-inputs]: Replace python-nose with python-pytest.
[home-page]: Follow redirect.
[arguments]: Update check phase.
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* gnu/packages/web.scm (esbuild): Update to 0.11.9.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/visidata.scm (visidata): Update to 2.4.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/gnu-doc.scm (gnu-standards): Update to 2020-11-25.
[source]: Make file-name more descriptive. Use version variable for
revision.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/tex.scm: New variable.
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This fixes: <https://issues.guix.gnu.org/47727>. The OCR prompt detection is
failing, so remove it altogether. It looks like the test doesn't need the
prompt detection delay to work properly.
* gnu/tests/base.scm (run-halt-test): Remove failing OCR detection.
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Fixes <https://bugs.gnu.org/46737>.
PostgreSQL running with a different socket directory to the default one in the
package itself breaks some services, this commit restores the previous
behaviour where PostgreSQL by default will run with a socket directory that
matches the default used by PostgreSQL packaged for Guix.
Switching to a different default value can happen, but only alongside changing
the PostgreSQL package.
* gnu/services/databases.scm (<postgresql-config-file>)[socket-directory]:
Change default to #false.
* doc/guix.texi (Database Services): Update documentation, and specify a
different value for disabling connections via sockets.
* gnu/tests/guix.scm (%guix-data-service-os): Use default PostgreSQL
behaviour.
* gnu/tests/monitoring.scm (%zabbix-os): Likewise.
* gnu/tests/web.scm (patchwork-os): Likewise.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/guile-xyz.scm (guile-picture-language): Update to
0.0.1-5.a1322bf.
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* etc/committer.scm.in (main): Add newline to message.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* etc/committer.scm.in (diff-info): Use "git diff-files" instead of "git diff".
(old-sexp): Use "git cat-file" instead of "git show".
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* doc/guix.texi (Build Systems): Document keyword parameters of
'gnu-build-system'.
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Before this change, the 'gnu-build-system' phases were listed in the
"Build Systems" section, and then summarized in the "Build Phases"
section. This moves everything to "Build Phases".
* doc/guix.texi (Build Systems): Move phase table to...
(Build Phases): ... here. Rearrange surrounding text.
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This should noticeably speed up compilation for channels with many files.
* guix/channels.scm (standard-module-derivation)[build]: Define
'optimizations-for-level' and '-O1'. Pass #:optimization-options to
'compile-files'.
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* gnu/services/networking.scm (ipfs-service-type)[description]: Avoid
abbreviation.
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It is tested whether the IPFS service listens
at the gateway and API ports and whether it
is possible to upload and download a bytevector.
* gnu/tests/networking.scm
(%ipfs-os): New variable.
(run-ipfs-test): New procedure.
(%test-ipfs): New system test.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/tests.scm
(<marionette-configuration>): Add 'extensions' field.
(marionette-shepherd-service): Honour the field.
(with-import-modules-and-extensions): Define a combination
of 'with-import-modules' and 'with-extensions'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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