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2022-05-29gnu: pigx-chipseq: Fix build.•••* gnu/packages/bioinformatics.scm (pigx-chipseq)[arguments]: Patch build system. Ricardo Wurmus
2022-05-29gnu: Add r-googlevis.•••* gnu/packages/cran.scm (r-googlevis): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2022-05-29scripts/import: Use pretty printer from (guix scripts style).•••* guix/scripts/import.scm (guix-import): Use pretty-print-with-comments. (newline-rewriting-port): Remove procedure. Ricardo Wurmus
2022-05-28services: elogind: When started by dbus-daemon, wait for the Shepherd service.•••Fixes <https://issues.guix.gnu.org/55444>. Previously shepherd and dbus-daemon would race to start elogind. In some cases (for instance if one logs in quickly enough on the tty), dbus-daemon would "win" and start elogind before shepherd has had a chance to do it. Consequently, shepherd would fail to start elogind and mark it as stopped and disabled, in turn preventing services that depend on it such as 'xorg-server' from starting. * gnu/services/desktop.scm (elogind-dbus-service): Rewrite to refer to a wrapper that waits for the 'elogind' Shepherd service. Ludovic Courtès
2022-05-28services: herd: Add 'wait-for-service'.•••* gnu/services/herd.scm (wait-for-service): New procedure. Ludovic Courtès
2022-05-28gnu: Add r-msdata.•••* gnu/packages/bioconductor.scm (r-msdata): New variable. Ricardo Wurmus
2022-05-28gnu: r-tcgabiolinksgui-data: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0. Ricardo Wurmus
2022-05-28gnu: r-curatedtcgadata: Update to 1.18.0.•••* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2022-05-28gnu: r-gagedata: Update to 2.34.0.•••* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0. Ricardo Wurmus
2022-05-28gnu: r-affydata: Update to 1.44.0.•••* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0. Ricardo Wurmus
2022-05-28gnu: r-all: Update to 1.38.0.•••* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0. Ricardo Wurmus
2022-05-28gnu: r-hsmmsinglecell: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0. Ricardo Wurmus
2022-05-28gnu: r-pasilla: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0. [propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown. [native-inputs]: Add r-knitr. Ricardo Wurmus
2022-05-28gnu: r-genomationdata: Update to 1.28.0.•••* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0. Ricardo Wurmus
2022-05-28gnu: r-genelendatabase: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0. Ricardo Wurmus
2022-05-28gnu: r-copyhelper: Update to 1.28.0.•••* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0. Ricardo Wurmus
2022-05-28gnu: r-chromstardata: Update to 1.22.0.•••* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0. Ricardo Wurmus
2022-05-28gnu: r-celldex: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0. Ricardo Wurmus
2022-05-28gnu: r-biscuiteerdata: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0. Ricardo Wurmus
2022-05-28gnu: r-arrmdata: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0. Ricardo Wurmus
2022-05-28gnu: r-aneufinderdata: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0. Ricardo Wurmus
2022-05-28gnu: r-adductdata: Update to 1.12.0.•••* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0. Ricardo Wurmus
2022-05-28gnu: r-pfam-db: Update to 3.15.0.•••* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0. Ricardo Wurmus
2022-05-28gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.•••* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0. [propagated-inputs]: Add r-annotationdbi. Ricardo Wurmus
2022-05-28gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.•••* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4. Ricardo Wurmus
2022-05-28gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.•••* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3. Ricardo Wurmus
2022-05-28gnu: r-leidenbase: Update to 0.1.9.•••* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9. Ricardo Wurmus
2022-05-28gnu: r-phyloseq: Update to 1.40.0.•••* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0. Ricardo Wurmus
2022-05-28gnu: r-tximeta: Update to 1.14.0.•••* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0. Ricardo Wurmus
2022-05-28gnu: r-tricycle: Update to 1.4.0.•••* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0. [propagated-inputs]: Add r-ggnewscale. Ricardo Wurmus
2022-05-28gnu: r-tcgabiolinks: Update to 2.24.1.•••* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1. Ricardo Wurmus
2022-05-28gnu: r-biscuiteer: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0. [propagated-inputs]: Add r-iranges. Ricardo Wurmus
2022-05-28gnu: r-omnipathr: Update to 3.4.0.•••* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0. [propagated-inputs]: Add r-withr. Ricardo Wurmus
2022-05-28gnu: r-dmrseq: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0. Ricardo Wurmus
2022-05-28gnu: r-bsseq: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0. Ricardo Wurmus
2022-05-28gnu: r-biotmle: Update to 1.20.0.•••* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0. Ricardo Wurmus
2022-05-28gnu: r-biotip: Update to 1.10.0.•••* gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0. [propagated-inputs]: Remove r-hmisc; add r-scran. Ricardo Wurmus
2022-05-28gnu: r-bioqc: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0. Ricardo Wurmus
2022-05-28gnu: r-bionetstat: Update to 1.16.0.•••* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0. Ricardo Wurmus
2022-05-28gnu: r-bionet: Update to 1.56.0.•••* gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0. Ricardo Wurmus
2022-05-28gnu: r-bionero: Update to 1.4.0.•••* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0. Ricardo Wurmus
2022-05-28gnu: r-biomvrcns: Update to 1.36.0.•••* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0. Ricardo Wurmus
2022-05-28gnu: r-biomvcclass: Update to 1.64.0.•••* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.64.0. Ricardo Wurmus
2022-05-28gnu: r-mvcclass: Update to 1.70.0.•••* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.70.0. Ricardo Wurmus
2022-05-28gnu: r-biomformat: Update to 1.24.0.•••* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.24.0. Ricardo Wurmus
2022-05-28gnu: r-biodb: Update to 1.4.0.•••* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.0. Ricardo Wurmus
2022-05-28gnu: r-biocdockermanager: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.0. Ricardo Wurmus
2022-05-28gnu: r-biocthis: Update to 1.6.0.•••* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.6.0. Ricardo Wurmus
2022-05-28gnu: r-basilisk: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.0. Ricardo Wurmus
2022-05-28gnu: r-basilisk-utils: Update to 1.8.0.•••* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.8.0. Ricardo Wurmus
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