Age | Commit message (Collapse) | Author |
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* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
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* gnu/packages/haskell.scm (ghc-lzma): New variable.
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* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
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* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
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* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
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* gnu/packages/haskell.scm (ghc-cairo): New variable.
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* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax
version checks.
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* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove
ghc-http-client.
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Fixes a regression introduced in
1d0be47ab680db938ac8da1ee65e1de91e198f67 whereby the total size for
directories (coming from substitutes) would be 4KiB. This led the
progress bar to go back to the start, typically.
* guix/progress.scm (progress-reporter/trace): Add 'total'. In 'start',
initialize it. Adjust 'report' to update it. Adjust 'stop' to prefer
SIZE as the actual size and then TOTAL. Do not use the size of FILE as
the total since that could be 4KiB when FILE is a directory.
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* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0.
[source]: Update sha256.
[native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
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* gnu/packages/ruby.scm (ruby-mathn): New variable.
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This fixes building ruby-sass with Ruby 2.5.
* gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to
fix the expectation of one of the tests. Also change the comment regarding the
tests not being run.
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* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test
phase to fix a test that fails under Ruby 2.5.
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These have been removed in Ruby 2.5.
* gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to
also remove the -rubygems flags.
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This works with Ruby 2.5.
* gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
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The documentation on SourceForge is now located in the same directory as the
source code.
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
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* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnucash.scm (gnucash): Update to 3.3.
[source]: Add patch.
[arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and
'glib-or-gtk-wrap' phases.
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* gnu/packages/games.scm (bastet): New public variable.
* gnu/packages/patches/bastet-change-source-of-unordered_set.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
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* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
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* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
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* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
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* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make
flags.
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* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2.
[source]: Fetch from git.
[arguments]: Delete reset-gzip-timestamps phase.
[inputs]: Add python-plotly.
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* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1.
[source]: Fetch from git.
[arguments]: Delete tests requiring internet access; use "invoke".
[inputs]: Add curl.
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* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add
python-pandas.
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* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9.
[arguments]: Remove obsolete make flags.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.9.
[origin]: Remove bundled htslib sources.
[arguments]: Remove obsolete make-flags.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
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Includes fixes for CVE-2018-12386 and CVE-2018-12387.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the
upstream mozilla-esr60 repository.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12.
(%linux-libre-hash): Update hash.
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* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74.
(%linux-libre-4.14-hash): Update hash.
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
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* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis,
mumps-openmpi, scalapack and pt-scotch.
[arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase
ahead of 'configure' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default
directories. Replace the 'remove-empty-dirs' phase with a
'install-no-empty-directories' one.
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* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
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* gnu/packages/dns.scm (nsd): New public variable.
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* gnu/packages/guile.scm (guile-next): Update to commit
6f3357b0df64c4be17e72079864c09a542f1c779.
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* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
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* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2
to ENABLE_HTTP2.
[inputs]: Add nghttp2:lib.
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* gnu/packages/web.scm (hiawatha): Update to 10.8.3.
[source]: Also delete bundled copy of nghttp2.
[inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache.
* gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
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* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0.
[native-inputs]: Add python.
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* gnu/packages/geo.scm (geos): Update to 3.7.0.
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* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2.
[source]: Use the author's more up-to-date git repository.
[native-inputs]: Add autoconf and automake.
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* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
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* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
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* gnu/packages/package-management.scm (guix): Update to 1d0be47.
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Fixes <https://bugs.gnu.org/32895>.
Reported by Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>.
* guix/progress.scm (progress-reporter/trace): In 'stop', make sure SIZE
is an integer. Previously we'd generate a "@ download-progress" trace
with #f for the 'transferred' number when downloading files whose size
is not known in advance.
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* gnu/packages/cups.scm (escpr): Update to 1.6.30.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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[[PGP Signed Part:Good signature from BF286CB6593E5FFD Björn Höfling <bjoern.hoefling@bjoernhoefling.de> (trust undefined) created at 2018-10-03T22:28:20+0200 using DSA]]
* gnu/packages/image-processing.scm (opencv): Update to 3.4.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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