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2023-03-15gnu: r-chromvar: Update to 1.20.2.•••* gnu/packages/bioconductor.scm (r-chromvar): Update to 1.20.2. Ricardo Wurmus
2023-03-15gnu: r-fishpond: Update to 2.4.1.•••* gnu/packages/bioconductor.scm (r-fishpond): Update to 2.4.1. [propagated-inputs]: Remove r-rcpp. Ricardo Wurmus
2023-03-15gnu: r-s4vectors: Update to 0.36.2.•••* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.36.2. Ricardo Wurmus
2023-03-15gnu: r-biocviews: Update to 1.66.3.•••* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.3. Ricardo Wurmus
2023-03-15gnu: r-bioccheck: Update to 1.34.3.•••* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.3. Ricardo Wurmus
2023-03-15gnu: r-variancepartition: Update to 1.28.7.•••* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.7. Ricardo Wurmus
2023-03-15gnu: r-circrnaprofiler: Update to 1.12.2.•••* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.12.2. Ricardo Wurmus
2023-03-15gnu: r-cicero: Update to 1.16.2.•••* gnu/packages/bioconductor.scm (r-cicero): Update to 1.16.2. Ricardo Wurmus
2023-03-15gnu: r-rsubread: Update to 2.12.3.•••* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.12.3. Ricardo Wurmus
2023-03-15gnu: r-iclusterplus: Update to 1.34.3.•••* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.34.3. Ricardo Wurmus
2023-03-15gnu: r-rbowtie2: Update to 2.4.2.•••* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.4.2. Ricardo Wurmus
2023-03-15gnu: r-motifbreakr: Update to 2.12.3.•••* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.12.3. Ricardo Wurmus
2023-03-15gnu: r-clusterexperiment: Update to 2.18.2.•••* gnu/packages/bioconductor.scm (r-clusterexperiment): Update to 2.18.2. Ricardo Wurmus
2023-03-15gnu: r-clusterprofiler: Update to 4.6.2.•••* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.6.2. Ricardo Wurmus
2023-03-15gnu: r-sigpathway: Update to 1.66.2.•••* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.66.2. Ricardo Wurmus
2023-03-15gnu: r-linnorm: Update to 2.22.2.•••* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.22.2. Ricardo Wurmus
2023-03-15gnu: r-glmgampoi: Update to 1.10.2.•••* gnu/packages/bioconductor.scm (r-glmgampoi): Update to 1.10.2. Ricardo Wurmus
2023-03-15gnu: r-diffbind: Update to 3.8.4.•••* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.8.4. Ricardo Wurmus
2023-03-15gnu: r-scmap: Update to 1.20.2.•••* gnu/packages/bioconductor.scm (r-scmap): Update to 1.20.2. Ricardo Wurmus
2023-03-15gnu: r-mutationalpatterns: Update to 3.8.1.•••* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1. Ricardo Wurmus
2023-03-15gnu: r-muscat: Update to 1.12.1.•••* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1. Ricardo Wurmus
2023-03-15gnu: r-limma: Update to 3.54.2.•••* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2. Ricardo Wurmus
2023-03-15gnu: r-lfa: Update to 1.28.2.•••* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2. Ricardo Wurmus
2023-03-15gnu: r-genomicalignments: Update to 1.34.1.•••* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1. Ricardo Wurmus
2023-03-15gnu: r-annotationdbi: Update to 1.60.2.•••* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2. Ricardo Wurmus
2023-03-15gnu: r-infercnv: Update to 1.14.2.•••* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2. Ricardo Wurmus
2023-03-15gnu: r-bandits: Update to 1.14.2.•••* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2. Ricardo Wurmus
2023-03-15gnu: r-bambu: Update to 3.0.8.•••* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8. Ricardo Wurmus
2023-03-15gnu: r-atena: Update to 1.4.1.•••* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1. [propagated-inputs]: Add r-matrixstats. Ricardo Wurmus
2023-03-15gnu: r-alpsnmr: Update to 4.0.4.•••* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4. [propagated-inputs]: Add r-cli. Ricardo Wurmus
2023-03-15gnu: r-biocpkgtools: Update to 1.16.1.•••* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1. [source]: Add snippet to remove bundled minified JavaScript files. [native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and js-underscore. [arguments]: Add build phase 'process-javascript. Ricardo Wurmus
2023-03-15gnu: r-mast: Update to 1.24.1.•••* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1. [source]: Delete minified JavaScript. [arguments]: Add build phase 'process-javascript. [native-inputs]: Add esbuild and js-jquery-sticky-kit. Ricardo Wurmus
2023-03-15gnu: sbcl-nclasses: Update to 0.3.0.•••* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0. Pierre Neidhardt
2023-03-15gnu: Add sbcl-stumpwm-hostname.•••* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> jgart
2023-03-15gnu: sbcl-mcclim: Update project urls.•••* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url. [home-page]: Update project home page. Signed-off-by: Andreas Enge <andreas@enge.fr> jgart
2023-03-15gnu: reprotest: Update to 0.7.23.•••* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23. [phases] Update adjust-locales. Vagrant Cascadian
2023-03-15gnu: diffoscope: Update to 238.•••* gnu/packages/diffoscope.scm (diffoscope): Update to 238. [native-inputs]: Switch from poppler to poppler-next. Vagrant Cascadian
2023-03-15gnu: emacs-org-modern: Update to 0.9.•••* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9. Andrew Tropin
2023-03-14gnu: r-rhandsontable: Move to (gnu packages cran).•••* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from here... * gnu/packages/cran.scm (r-rhandsontable): ...to here. Ricardo Wurmus
2023-03-14gnu: Add r-premessa.•••* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. Navid Afkhami
2023-03-14gnu: icecat: Update to 102.9.0-guix0-preview1 [security fixes].•••Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162, CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2023-03-14gnu: Add r-rhandsontable.•••* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de> Ricardo Wurmus
2023-03-14gnu: r-tidyverse: Update to 2.0.0.•••* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0. [propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg. Navid Afkhami
2023-03-14gnu: pcb-rnd: Update to 3.1.0.•••* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0. [inputs]: Add librnd. [arguments]: Use gexp; set LIBRND_PREFIX. Ricardo Wurmus
2023-03-14gnu: Add librnd.•••* gnu/packages/engineering.scm (librnd): New variable. Ricardo Wurmus
2023-03-14gnu: pcb: Remove eudev.•••* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer necessary to add it for mesa. Ricardo Wurmus
2023-03-14gnu: pcb: Drop input labels.•••* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package labels. Ricardo Wurmus
2023-03-14gnu: pcb: Update to 4.3.0.•••* gnu/packages/engineering.scm (pcb): Update to 4.3.0. [arguments]: Remove obsolete build phases. Ricardo Wurmus
2023-03-14gnu: pcb: Use gexp.•••* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T from build phases. Ricardo Wurmus
2023-03-14gnu: lepton-eda: Adjust format.•••* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and reformat source field. Ricardo Wurmus
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