| Age | Commit message (Expand) | Author |
|---|
| 2021-07-28 | gnu: r-fastmatch: Update to 1.1-3....* gnu/packages/cran.scm (r-fastmatch): Update to 1.1-3.
| Ricardo Wurmus |
| 2021-07-28 | gnu: r-jpeg: Update to 0.1-9....* gnu/packages/cran.scm (r-jpeg): Update to 0.1-9.
| Ricardo Wurmus |
| 2021-07-28 | gnu: r-rvest: Update to 1.0.1....* gnu/packages/cran.scm (r-rvest): Update to 1.0.1.
| Ricardo Wurmus |
| 2021-07-28 | gnu: r-ggpp: Update to 0.4.1....* gnu/packages/cran.scm (r-ggpp): Update to 0.4.1.
[propagated-inputs]: Remove r-generics and r-plyr.
| Ricardo Wurmus |
| 2021-07-28 | gnu: r-googlesheets4: Update to 1.0.0....* gnu/packages/cran.scm (r-googlesheets4): Update to 1.0.0.
[propagated-inputs]: Remove r-lifecycle; add r-cli.
| Ricardo Wurmus |
| 2021-07-28 | gnu: Add r-lobstr....* gnu/packages/cran.scm (r-lobstr): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: Add r-datawizard....* gnu/packages/cran.scm (r-datawizard): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: r-with-tests: Hardcode path to coreutils’ rm...When running R in a container like this
guix environment --no-cwd -C --ad-hoc r-minimal -- Rscript -e 'Sys.timezone()'
it would print an additional line
sh: rm: command not found
before exiting.
* gnu/packages/statistics.scm (r-with-tests) [#:phases]: Add substitute*
to patch call to `rm` and rename phase to reflect what it does now.
| Lars-Dominik Braun |
| 2021-07-28 | gnu: Add python-modin....* gnu/packages/python-science.scm (python-modin): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: Add python-distributed....* gnu/packages/python-science.scm (python-distributed): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: Add python-zict....* gnu/packages/python-xyz.scm (python-zict): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: Add python-heapdict....* gnu/packages/python-xyz.scm (python-heapdict): New variable.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-pyarrow: Fix parquet support....Co-authored-by: Phil Beadling <phil@beadling.co.uk>.
* gnu/packages/databases.scm (python-pyarrow)[arguments]: Add phases
patch-cmake-variables, patch-parquet-library, and set-PYARROW_WITH_PARQUET.
[propagated-inputs]: Add "include" output of apache-arrow package.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-pandas: Update to 1.3.0....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.0.
[arguments]: Adjust check phase.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-dask: Update to 2021.7.1....* gnu/packages/python-xyz.scm (python-dask): Update to 2021.7.1.
[arguments]: Do not skip test_shuffle.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-partd: Update to 1.2.0....* gnu/packages/python-xyz.scm (python-partd): Update to 1.2.0.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-numexpr: Update to 2.7.3....* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.7.3.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python-cloudpickle: Update to 1.6.0....* gnu/packages/python-xyz.scm (python-cloudpickle-testpkg): New variable.
(python-cloudpickle): Update to 1.6.0; inherit from
python-cloudpickle-testpkg.
[source]: Fetch from git repository.
[native-inputs]: Add python-cloudpickle-testpkg; replace python-tornado with
python-tornado-6.
| Ricardo Wurmus |
| 2021-07-28 | gnu: python2-cloudpickle: Override version, source, and native-inputs....* gnu/packages/python-xyz.scm (python2-cloudpickle)[version]: Explicitly set
to 1.3.0.
[source]: Copy from base package.
[native-inputs]: Do not inherit; copy.
| Ricardo Wurmus |
| 2021-07-28 | gnu: cmake: Update to 3.21.1....* gnu/packages/cmake.scm (cmake): Update to 3.21.1.
[arguments]: Skip one more test.
| Ricardo Wurmus |
| 2021-07-28 | gnu: julia-distances: Update flakey tests....* gnu/packages/julia-xyz.scm (julia-distances)[arguments]: Adjust the
custom 'skip-flakey-tests phase.
| Efraim Flashner |
| 2021-07-28 | gnu: julia-docstringextensions: Skip tests....* gnu/packages/julia-xyz.scm (julia-docstringextensions)[arguments]:
Skip tests.
| Efraim Flashner |
| 2021-07-28 | gnu: julia-datavalues: Skip tests....* gnu/packages/julia-xyz.scm (julia-datavalues)[arguments]: Skip tests.
| Efraim Flashner |
| 2021-07-28 | gnu: julia-compat: Update to 3.31.0....* gnu/packages/julia-xyz.scm (julia-compat): Update to 3.31.0.
| Efraim Flashner |
| 2021-07-28 | gnu: global: Update to 6.6.7....* gnu/packages/code.scm (global): Update to 6.6.7.
| Efraim Flashner |
| 2021-07-28 | gnu: julia-jllwrappers: Add julia-preferences....* gnu/packages/julia-jll.scm (julia-jllwrappers)[propagated-inputs]: Add
julia-preferences.
| Efraim Flashner |
| 2021-07-28 | gnu: Add julia-preferences....* gnu/packages/julia-xyz.scm (julia-preferences): New variable.
| Efraim Flashner |
| 2021-07-28 | gnu: julia: Skip tests on aarch64-linux....* gnu/packages/julia.scm (julia)[arguments]: Skip tests when building
for aarch64-linux.
| Efraim Flashner |
| 2021-07-28 | gnu: llvm-julia: Overide build-type....* gnu/packages/julia.scm (llvm-julia)[arguments]: Move CMAKE_BUILD_TYPE
config from configure-flags to build-type.
| Efraim Flashner |
| 2021-07-28 | gnu: libuv-julia: Clean up package definition....* gnu/packages/julia.scm (libuv-julia)[source]: Use git-file-name.
[build-system]: Remove field.
[arguments]: Remove field.
| Efraim Flashner |
| 2021-07-28 | gnu: julia: Update to 1.6.1....* gnu/packages/julia.scm (julia): Update to 1.6.1.
[arguments]: Adjust custom 'prepare-deps phase. Remove custom
'fix-precompile phase. Add new 'shared-objects-path phase to fix paths
to shared objects. Add new 'adjust-test-suite phase to adjust for
differences in bundled vs packaged libraries. Adjust custom
'disable-broken-tests phase for new version. Add symlinks to libs in
'symlink-libraries phase. In make-flags add more finegrained compilation
targets for x86_64-linux. Update make-flags for changes since last
version.
[inputs]: Add nghttp2:lib, gfortran:lib, curl-ssh. Remove arpack-ng,
curl. Sort alphabetically.
[native-inputs]: Add nss-certs. Sort alphabetically.
(libuv-julia): Update to newer revision.
(libunwind-julia)[source]: Add new patch.
(llvm-julia): Inherit from llvm-11.
[source]: Update patch list.
[arguments]: Apply minority of the Julia specific patches in
'julia-patches phase.
[inputs]: Add julia patches.
Co-Authored-By: Nicolò Balzarotti <nicolo@nixo.xyz>.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Co-Authored-By: Efraim Flashner <efraim@flashner.co.il>.
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: Add curl-ssh....* gnu/packages/curl.scm (curl-ssh): New hidden package.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: julia-staticarrays: Update to 1.2.5...* gnu/packages/julia-xyz.scm (julia-staticarrays): Update to 1.2.5
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: openlibm: Fix cross-compiling....* gnu/packages/maths.scm (openlibm)[arguments]: Add configure-flag to
use cc-for-target.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: openlibm: Update to 0.7.4....* gnu/packages/maths.scm (openlibm): Update to 0.7.4.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: Add pcre2-10.36....* gnu/packages/pcre.scm (pcre2-10.36): New variable.
Co-Authored-By: zimoun <zimoun.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: Add utf8proc-2.6.1....* gnu/packages/textutils.scm (utf8proc-2.6.1): New variable.
Co-Authored-By: zimoun <zimon.toutoune@gmail.com>.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Jean-Baptiste Volatier |
| 2021-07-28 | gnu: glibc-for-bootstrap: Update patch....There was/is something funny going on with the bootstrap glibc. The
symbol for posix_spawnp points to getopt_r. Which in turn leads to a
lot of crashed in tests later on. I extended the glibc-bootstrap patch
to work around this bug.
* gnu/packages/patches/glibc-bootstrap-system.patch: Adjust patch to
work correctly with new architectures.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
| Franz Josef |
| 2021-07-28 | gnu: global: Fix lisp install dir....* gnu/packages/code.scm (global)[arguments]: Adjust custom 'post-install
phase to move emacs files to the correct directory.
| Efraim Flashner |
| 2021-07-27 | gnu: python-pikepdf: Update to 2.16.0....* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.16.0.
| Nicolas Goaziou |
| 2021-07-27 | gnu: telescope: Update to 0.4.1....* gnu/packages/web-browsers.scm (telescope): Update to 0.4.1.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| cage |
| 2021-07-27 | gnu: emacs-link-hint: Update to 0.1-3.9fbf196....* gnu/packages/emacs-xyz.scm (emacs-link-hint): Update to 0.1-3.9fbf196.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Alexandr Vityazev |
| 2021-07-27 | gnu: emacs-elpher: Update to 2.10.3....* gnu/packages/emacs-xyz.scm (emacs-elpher): Update to 2.10.3.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Simon South |
| 2021-07-27 | gnu: emacs-typit: Update to 0.2.1-2.fa125bf....* gnu/packages/emacs-xyz.scm (emacs-typit): Update to 0.2.1-2.fa125bf.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Morgan Smith |
| 2021-07-27 | gnu: emacs-typit: Fix dictionary location....Move the dictionary directory to be next to the lisp files, where it is
expected to be.
* gnu/packages/emacs-xyz.scm (emacs-typit)[arguments]
<#:phases>: Remove install-dictionaries phase.
<#:include>: Include dictionaries.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Morgan Smith |
| 2021-07-27 | gnu: emacs-org-roam-bibtex: Update to 0.6.0....* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.0.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Vinicius Monego |
| 2021-07-27 | gnu: emacs-org-roam: Update to 2.0.0....* gnu/packages/emacs-xyz.scm (emacs-org-roam): Update to 2.0.0.
[propagated-inputs]: Add emacs-magit.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Vinicius Monego |
| 2021-07-27 | gnu: Add emacs-org-cv....* gnu/packages/emacs-xyz.scm (emacs-org-cv): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
| Vinicius Monego |
| 2021-07-27 | gnu: mesa-opencl-icd: Use absolute path for the library....* gnu/packages/gl.scm (mesa-opencl-icd): Use absolute path for OpenCL
platform library in "mesa.icd" file. With this patch setting
LD_LIBRARY_PATH=$LIBRARY_PATH is no longer needed to run OpenCL
applications.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
| Ivan Gankevich |
| 2021-07-27 | derivations: Make 'coalesce-duplicate-inputs' linear in the number of inputs....Partly fixes <https://issues.guix.gnu.org/49439>.
Reported by Ricardo Wurmus <rekado@elephly.net>.
When running the command:
guix environment pigx-scrnaseq --search-paths --no-grafts
this change reduces total heap allocations from 1.4GiB to 717MiB (49%)
and wall-clock time from 7.5s to 5.7s (24%).
Without '--no-grafts', heap allocations go from 2.1GiB to 1.4GiB (33%)
and wall-clock time from 12.1s to 10.9s (10%).
* guix/derivations.scm (coalesce-duplicate-inputs): Rewrite using a hash
table to make it O(N) rather than O(N²).
| Ludovic Courtès |
