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2022-03-16gnu: dunst: Update to 1.8.1....* gnu/packages/dunst.scm (dunst): Update to 1.8.1. * gnu/packages/patches/dunst-1.7.3-fix-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jai Vetrivelan
2022-03-16gnu: python-gitlab: update to 3.2.0...* gnu/packages/python-web.scm (python-gitlab): Update to 3.2.0 Signed-off-by: Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Denis 'GNUtoo' Carikli
2022-03-16system: Improve 'read-boot-parameters' incompatibility diagnostic....Previously, when reading an incompatible "parameters" file, 'guix system' would print a warning and then crash with a wrong-type-arg backtrace because code expects 'read-boot-parameters' to always return a <boot-parameters> record. * gnu/system.scm (read-boot-parameters): Upon incompatibility, raise an error instead of returning #f. Also raise a '&fix-hint' condition. * tests/boot-parameters.scm ("read, construction, mandatory fields"): Define 'test-read-boot-parameters' as a macro; expect 'formatted-message?' exceptions rather than #f returns. Ludovic Courtès
2022-03-16gnu: cryfs: Update to 0.11.2....* gnu/packages/crypto.scm (cryfs): Update to 0.11.2. [arguments]: Fix build with boost 1.77 Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brendan Tildesley
2022-03-16packages: 'modify-inputs' preserves outputs in 'replace' clauses....Fixes <https://issues.guix.gnu.org/53915>. Reported by Gordon Quad <gordon@niflheim.info>. * guix/packages.scm (replace-input): Preserve the outputs of INPUT by default. * tests/packages.scm ("modify-inputs, replace, extra output"): New test. Ludovic Courtès
2022-03-16tests: Exercise 'modify-inputs' with a 'replace' clause....* tests/packages.scm ("modify-inputs, replace") ("modify-inputs, replace, change output"): New tests. Ludovic Courtès
2022-03-16gnu : nicotine+: Update to 3.2.1....* gnu/packages/nicotine.scm (nicotine+): Update to 3.2.1. [source]: Delete network requried tests in snippet. [arguments]: Remove trailing #t. Replae 'check phase to run proper test. [inputs]: Add bash-minimal, gspell, libappindicator. [native-inputs]: Remove python-pytest. Add xvfb-run. [home-page]: Update URL. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Fatima Toothpaste
2022-03-16Revert "gnu: %boot3-inputs: Add missing input."...This reverts commit ed2ca2dcb558dcda6ea69c64a0a9e9c0b52f892e. This is no longer needed after the gcc STARTFILE_PREFIX_SPEC commit. Efraim Flashner
2022-03-16Revert "gnu: Add %final-inputs-riscv64."...This reverts commit 0444be868903356a37fc8ffd3cdf820ca038f3e6. This is no longer necessary after the gcc STARTFILE_PREFIX_SPEC commit. Efraim Flashner
2022-03-16gnu: gcc: For riscv64-linux remove STARTFILE_PREFIX_SPEC....* gnu/packages/gcc.scm (gcc-4.7)[arguments]: When building for riscv64-linux and the 'gcc/configure/riscv' directory exists adjust the STARTFILE_PREFIX_SPEC so it doesn't do anything. Efraim Flashner
2022-03-15gnu: httpie: Update to 3.1.0 [security fixes]....Fixes CVE-2022-24737 and CVE-2022-0430. * gnu/packages/python-web.scm (httpie): Update to 3.1.0. Signed-off-by: Leo Famulari <leo@famulari.name> kiasoc5
2022-03-15gnu: Add r-diffcyt....* gnu/packages/bioconductor.scm (r-diffcyt): New variable. zimoun
2022-03-15gnu: Add r-ga....* gnu/packages/cran.scm (r-ga): New variable. zimoun
2022-03-15gnu: Add r-carrier....* gnu/packages/cran.scm (r-carrier): New variable. zimoun
2022-03-15gnu: Add r-babelwhale....* gnu/packages/cran.scm (r-babelwhale): New variable. zimoun
2022-03-15gnu: Add r-polychrome....* gnu/packages/cran.scm (r-polychrome): New variable. zimoun
2022-03-15gnu: Add r-scannotatr....* gnu/packages/bioconductor.scm (r-scannotatr): New variable. zimoun
2022-03-15gnu: r-sn: Update to 2.0.2....* gnu/packages/statistics.scm (r-sn): Update to 2.0.2. Ricardo Wurmus
2022-03-15gnu: r-dt: Update to 0.21....* gnu/packages/statistics.scm (r-dt): Update to 0.21. Ricardo Wurmus
2022-03-15gnu: r-simr: Update to 1.0.6....* gnu/packages/statistics.scm (r-simr): Update to 1.0.6. [propagated-inputs]: Add r-lmertest. [synopsis]: Change case and spelling. [description]: Use complete sentences. Ricardo Wurmus
2022-03-15gnu: r-rmarkdown: Update to 2.13....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.13. [propagated-inputs]: Add r-bslib. Ricardo Wurmus
2022-03-15gnu: r-withr: Update to 2.5.0....* gnu/packages/statistics.scm (r-withr): Update to 2.5.0. Ricardo Wurmus
2022-03-15gnu: r-openssl: Update to 2.0.0....* gnu/packages/statistics.scm (r-openssl): Update to 2.0.0. Ricardo Wurmus
2022-03-15gnu: r-commonmark: Update to 1.8.0....* gnu/packages/statistics.scm (r-commonmark): Update to 1.8.0. Ricardo Wurmus
2022-03-15gnu: r-desc: Update to 1.4.1....* gnu/packages/statistics.scm (r-desc): Update to 1.4.1. [propagated-inputs]: Remove r-crayon; add r-cli. Ricardo Wurmus
2022-03-15gnu: r-bbmisc: Update to 1.12....* gnu/packages/statistics.scm (r-bbmisc): Update to 1.12. [propagated-inputs]: Add r-data-table. Ricardo Wurmus
2022-03-15gnu: r-locfit: Update to 1.5-9.5....* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.5. Ricardo Wurmus
2022-03-15gnu: r-rlang: Update to 1.0.2....* gnu/packages/statistics.scm (r-rlang): Update to 1.0.2. Ricardo Wurmus
2022-03-15gnu: r-survival: Update to 3.3-1....* gnu/packages/statistics.scm (r-survival): Update to 3.3-1. Ricardo Wurmus
2022-03-15gnu: r-bien: Update to 1.2.5....* gnu/packages/cran.scm (r-bien): Update to 1.2.5. [native-inputs]: Remove r-testthat. Ricardo Wurmus
2022-03-15gnu: r-filehash: Update to 2.4-3....* gnu/packages/cran.scm (r-filehash): Update to 2.4-3. Ricardo Wurmus
2022-03-15gnu: r-pdftools: Update to 3.1.1....* gnu/packages/cran.scm (r-pdftools): Update to 3.1.1. Ricardo Wurmus
2022-03-15gnu: r-mlr3tuning: Update to 0.12.1....* gnu/packages/cran.scm (r-mlr3tuning): Update to 0.12.1. Ricardo Wurmus
2022-03-15gnu: r-bbotk: Update to 0.5.1....* gnu/packages/cran.scm (r-bbotk): Update to 0.5.1. Ricardo Wurmus
2022-03-15gnu: r-mlr3: Update to 0.13.3....* gnu/packages/cran.scm (r-mlr3): Update to 0.13.3. Ricardo Wurmus
2022-03-15gnu: r-parsnip: Update to 0.2.0....* gnu/packages/cran.scm (r-parsnip): Update to 0.2.0. [propagated-inputs]: Add r-cli, r-ggplot2, and r-withr. Ricardo Wurmus
2022-03-15gnu: r-posterior: Update to 1.2.1....* gnu/packages/cran.scm (r-posterior): Update to 1.2.1. Ricardo Wurmus
2022-03-15gnu: r-latex2exp: Update to 0.9.4....* gnu/packages/cran.scm (r-latex2exp): Update to 0.9.4. Ricardo Wurmus
2022-03-15gnu: r-shinystan: Update to 2.6.0....* gnu/packages/cran.scm (r-shinystan): Update to 2.6.0. [propagated-inputs]: Remove r-rsconnect. Ricardo Wurmus
2022-03-15gnu: r-semplot: Update to 1.1.5....* gnu/packages/cran.scm (r-semplot): Update to 1.1.5. Ricardo Wurmus
2022-03-15gnu: r-qgraph: Update to 1.9.2....* gnu/packages/cran.scm (r-qgraph): Update to 1.9.2. Ricardo Wurmus
2022-03-15gnu: r-openmx: Update to 2.20.6....* gnu/packages/cran.scm (r-openmx): Update to 2.20.6. Ricardo Wurmus
2022-03-15gnu: r-sem: Update to 3.1-14....* gnu/packages/cran.scm (r-sem): Update to 3.1-14. Ricardo Wurmus
2022-03-15gnu: r-quanteda: Update to 3.2.1....* gnu/packages/cran.scm (r-quanteda): Update to 3.2.1. Ricardo Wurmus
2022-03-15gnu: r-torch: Update to 0.7.2....* gnu/packages/cran.scm (r-torch): Update to 0.7.2. Ricardo Wurmus
2022-03-15gnu: r-caret: Update to 6.0-91....* gnu/packages/cran.scm (r-caret): Update to 6.0-91. Ricardo Wurmus
2022-03-15gnu: r-imager: Update to 0.42.13....* gnu/packages/cran.scm (r-imager): Update to 0.42.13. Ricardo Wurmus
2022-03-15gnu: r-seewave: Update to 2.2.0....* gnu/packages/cran.scm (r-seewave): Update to 2.2.0. Ricardo Wurmus
2022-03-15gnu: r-sysfonts: Update to 0.8.8....* gnu/packages/cran.scm (r-sysfonts): Update to 0.8.8. Ricardo Wurmus
2022-03-15gnu: r-bio3d: Update to 2.4-3....* gnu/packages/cran.scm (r-bio3d): Update to 2.4-3. Ricardo Wurmus
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