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2017-03-09gnu: r: Remove obsolete configure flags.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09gnu: r: Update to 3.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-08gnu: Add lensfun.Roel Janssen
* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08utils: Make sure to use the right 'bytevector->string'.Ludovic Courtès
In Guile 2.2, (rnrs io ports) exports 'bytevector->string', which conflicts with that of (ice-9 iconv). * guix/utils.scm: Hide 'bytevector->string' from (rnrs io ports).
2017-03-08packages: Use PACKAGE@VERSION syntax when reporting ambiguities.Ludovic Courtès
* gnu/packages.scm (%find-package): Upon ambiguity, use the PACKAGE@VERSION syntax instead of 'package-full-name'.
2017-03-08list-runtime-roots: Bufferize the lsof pipe.Ludovic Courtès
* nix/scripts/list-runtime-roots.in (lsof-roots): Add 'setvbuf' call for PIPE.
2017-03-08ui: Don't use '%default-port-encoding' to set the encoding of string ports.Ludovic Courtès
* guix/ui.scm (right-arrow): Call 'set-port-encoding!' to set PORT's encoding; remove use of 'with-fluids'. This is for compatibility with Guile 2.2 where the encoding of string ports is not influenced by %DEFAULT-PORT-ENCODING. * tests/ui.scm ("show-manifest-transaction"): Likewise.
2017-03-08ui: Avoid '_' as a pattern variable in 'match'.Ludovic Courtès
* guix/ui.scm (fill-paragraph): Don't use '_' as a pattern variable since that is shadowed by the top-level '_' binding on Guile 2.2. (show-manifest-transaction): Likewise.
2017-03-08download: Update the Savannah mirror list.Ludovic Courtès
* guix/download.scm (%mirrors) <savannah>: Remove centervenus.com, which seems to be broken. Add download-mirror.sv.gnu.org as a last resort.
2017-03-08gnu: Add guile2.2-haunt.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08gnu: Add guile2.2-reader.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08gnu: guile-reader: Update to 0.6.2.Ludovic Courtès
* gnu/packages/guile.scm (guile-reader): Update to 0.6.2. [arguments]: Remove.
2017-03-08tests: Avoid zero-expression 'begin' form.Ludovic Courtès
* tests/cran.scm ("description->package"): Add body after the expected pattern in 'match'.
2017-03-08hash: Close or flush sha256 output ports before calling their 'get' procedure.Ludovic Courtès
Slightly different buffering of custom binary output ports in Guile 2.1.7 would lead tests missing 'close-port' or 'force-output' to fail. * tests/hash.scm ("open-sha256-port, hello"): Add call to 'force-output' before call to 'get'. * tests/nar.scm ("write-file puts file in C locale collation order"): Call 'close-port' before calling 'get-hash'.
2017-03-08build: Unset 'NIX_BUILD_HOOK' when offloading support is missing.Ludovic Courtès
* build-aux/pre-inst-env.in: Export 'NIX_BUILD_HOOK' only when nix/scripts/offload is executable; unset it otherwise.
2017-03-08services: prosody: Use 'id' to introduce unhygienic top-level identifiers.Ludovic Courtès
* gnu/services/messaging.scm (define-all-configurations): Use 'id' to introduce raw/literal/unhygienic top-level identifiers. Fixes compilation with Guile 2.2.
2017-03-08services: prosody: Make sure 'id' is available at expansion time.Ludovic Courtès
* gnu/services/messaging.scm (id): Use 'define-syntax-rule' instead of 'define' to make sure 'id' is available at expansion time.
2017-03-08gnu: Remove unneeded imports.Ludovic Courtès
* gnu/packages/backup.scm: Remove unneeded (guix build utils) import. * gnu/packages/finance.scm: Likewise.
2017-03-08guix archive: Allow compilation with Guile 2.2.Ludovic Courtès
* guix/scripts/archive.scm (export-from-store): Avoid shadowing the top-level '_'.
2017-03-08gnu: inetutils: Enable tests.Maxim Cournoyer
* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f' and #:configure-flags. [native-inputs]: Add net-tools. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-08gnu: python-pandas: Fix build on 32-bit.Marius Bakke
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08gnu: Add python-faker.Marius Bakke
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust paths. Also rename to ... * gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-faker, python2-faker): New variables. (python-fake-factory)[properties]: Superseded by PYTHON-FAKER. (python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER. (python-orator, python2-orator)[propagated-inputs]: Replace PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08gnu: python-matplotlib-documentation: Fix build.Thomas Danckaert
* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]: Add python-mock and graphviz. [arguments]: Use separate build and install phases; correctly set latex paper size. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-08gnu: iperf: Update to 3.1.7.Marius Bakke
* gnu/packages/networking.scm (iperf): Update to 3.1.7.
2017-03-08gnu: libinput: Update to 1.6.3.Marius Bakke
* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
2017-03-08gnu: r: Fix more reproducibility problems.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the build system that need special treatment for reproducibility.
2017-03-08gnu: r: Fix syntax for INSTALL_OPTS.Ricardo Wurmus
This is a follow-up to commit 4621acfd8272fa93d0530faa5f015b26a194b587. * gnu/packages/statistics.scm (r)[arguments]: Ensure that "--built-timestamp" appears on the same line as the other INSTALL_OPTS.
2017-03-07gnu: bash: Use the bootstrap Guile in 'url-fetch/reset-patch-level'.Ludovic Courtès
Fixes <http://bugs.gnu.org/25775>. Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others. * guix/download.scm (in-band-download): Always use GUILE. This reverts 9f05908fb1e3707cae593d94688748294717a546. * gnu/packages/bash.scm (url-fetch/reset-patch-level): Remove #:guile. Pass %BOOTSTRAP-GUILE as #:guile to 'url-fetch'. Remove #:guile-for-build argument in 'gexp->derivation' call.
2017-03-07gnu: kdevelop: Upgrade to 5.0.4.Thomas Danckaert
* gnu/packages/kde.scm (kdevelop, kdevplatform): Upgrade to 5.0.4. (kdevplatform)[source]: Use kde mirror instead of github. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-07gnu: pcre2: Update to 10.23.Marius Bakke
* gnu/packages/pcre.scm (pcre2): Update to 10.23. [source]: Remove patch. [arguments]: Add phase to substitute /bin/echo reference. * gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-07gnu: khal: Update to 0.9.3.Leo Famulari
* gnu/packages/calendar.scm (khal): Update to 0.9.3. [native-inputs]: Use python-pytest-2.9.2.
2017-03-07gnu: gnupg: Update to 2.1.19.Leo Famulari
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19. [arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase. Add '--enable-gnupg-builddir-envvar' to #:configure-flags. [source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'. * gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-03-07gnu: Add emacs-yasnippet.Ricardo Wurmus
* gnu/packages/emacs.scm (emacs-yasnippet): New variable.
2017-03-07gnu: Add basic support for "alpha-linux" systems.Sergei Trofimovich
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "/lib/ld-linux.so.2" as "alpha-linux" ld.so. * gnu/packages/linux.scm (system->linux-architecture): Add "alpha" arch. Signed-off-by: Sergei Trofimovich <slyfox@inbox.ru> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07gnu: python-rpy2: Propagate python2-singledispatch.Pjotr Prins
* gnu/packages/python.scm (python-rp2)[native-inputs]: Rename to... [propagated-inputs]: ... this. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07gnu: java-xz: Update to 1.6.Ricardo Wurmus
* gnu/packages/java.scm (java-xz): Update to 1.6.
2017-03-07gnu: guile-lib: Update to 0.2.5Maxim Cournoyer
The build was broken since the URL of version 0.2.3 was changed. The archive was moved into an "old" subdirectory of the original location. * gnu/packages/guile.scm (guile-lib): Update to 0.2.5. [make-flags]: Add GUILE_AUTO_COMPILE to prevent guild errors. [phases]: Remove 'check replacement since it is no longer needed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-07gnu: asymptote: Update to 2.40.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote): Update to 2.40. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2017-03-07gnu: Add blind.宋文武
* gnu/packages/suckless.scm (blind): New package.
2017-03-07gnu: surf: Add 'dmenu' and 'xprop' to 'inputs'.Mekeor Melire
'dmenu' and 'xprop' are necessary to open a new URL in surf. * gnu/packages/suckless.scm (surf)[inputs]: Add dmenu and xprop. [arguments]: Add 'set-dmenu-and-xprop-file-name' phase to patch the paths to the 'dmenu' and 'xprop' binaries in surf's configuration file. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-06vm: Fix full-boot? option.David Craven
* gnu/system/vm.scm (virtualized-operating-system): Add full-boot? option. Don't add a %store-mapping when full-boot? is passed. This leads the grub-configuration-file procedure to look for the kernel and initrd in / instead of /gnu/store. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-06system: grub: Add missing URL in comment.Ludovic Courtès
* gnu/system/grub.scm (grub-root-search): Add missing URL in comment.
2017-03-06gnu: python-colorspacious: Run tests.Thomas Danckaert
* gnu/packages/python.scm (python-colorspacious, python2-colorspacious)[native-inputs]: Add python-nose. [arguments]: Add custom 'check phase which runs nosetests. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06gnu: rofi: Fix test failure.Marius Bakke
* gnu/packages/xdisorg.scm (rofi)[arguments]: Disable parallel tests.
2017-03-06gnu: Remove python-sphinx-1.2.3.Thomas Danckaert
* gnu/packages/python.scm (python-sphinx-1.2.3, python2-sphinx-1.2.3): Remove variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06gnu: python-statsmodels: Update to 0.8.0.Marius Bakke
* gnu/packages/statistics.scm (python-statsmodels, python2-statsmodels): Update to 0.8.0. [source]: Use 'pypi-uri'. [arguments]: Add more files to matplotlib backend substitution. * gnu/packages/patches/python-statsmodels-fix-tests.patch: Drop test that fails with numpy 1.12. Remove previous contents.
2017-03-06gnu: python-pandas: Update to 0.19.2.Marius Bakke
* gnu/packages/python.scm (python-pandas, python2-pandas): Update to 0.19.2. [source]: Use 'pypi-uri'.
2017-03-06gnu: python-matplotlib: Update to 2.0.0.Thomas Danckaert
* gnu/packages/python.scm (python-matplotlib, python2-matplotlib): Update to 2.0.0. [source]: Remove Tk backend patch, use Github instead of Sourceforge. [outputs]: Remove "doc" output. [inputs]: Add python-pyqt. [propagated-inputs]: Add python-cycler. [native-inputs]: Remove python-sphinx, python-numpydoc, texlive and texinfo. (python2-matplotlib)[native-inputs]: Add python2-functools32 and python2-subprocess32. (python-matplotlib-documentation, python2-matplotlib-documentation): New variables. * gnu/packages/patches/matplotlib-setupext-tk.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-06gnu: Add python2-subprocess32.Marius Bakke
* gnu/packages/python.scm (python2-subprocess32): New variable. * gnu/packages/patches/python2-subprocess32-disable-input-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-03-06gnu: python-numpy: Update to 1.12.0.Thomas Danckaert
* gnu/packages/python.scm (python-numpy): Update to 1.12.0. [source]: Use github instead of sourceforge. [native-inputs]: Add python-cython. To simplify the handling of dependency cycles (numpy documentation depends on matplotlib, which depends on numpy), we split out the documentation into a separate package: (python-numpy-bootstrap, python2-numpy-bootstrap): Remove variables. (python-numpy-documentation, python2-numpy-documentation): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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