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2022-05-06gnu: Add pigx-sars-cov-2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-sars-cov-2): New variable. (pigx-sars-cov2-ww): Deprecate this package in favor of the former.
2022-05-06gnu: rust-instant-0.1: Update to 0.1.9.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-instant-0.1): Update to 0.1.9.
2022-05-06gnu: rust-lock-api-0.4: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-lock-api-0.4): Update to 0.4.5.
2022-05-06gnu: rust-parking-lot-0.11: Update to 0.11.2.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-parking-lot-0.11): Update to 0.11.2.
2022-05-06gnu: rust-parking-lot-core-0.8: Update to 0.8.4.Ricardo Wurmus
* gnu/packages/crates-io.scm (rust-parking-lot-core-0.8): Update to 0.8.4.
2022-05-06gnu: tcl-tls: Use a gexp.Ludovic Courtès
* gnu/packages/tcl.scm (tcl-tls)[arguments]: Use a gexp.
2022-05-06gnu: tcl-tls: Add 'release-monitoring-url' and 'upstream-name' properties.Ludovic Courtès
* gnu/packages/tcl.scm (tcl-tls)[properties]: New field.
2022-05-06gnu: tcl: Add tcl-tls to packages.Daniel Lowe
* gnu/packages/tcl.scm (tcl-tls): Added 1.7.22 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Update to 2022.2.0.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo): Update to 2022.2.0. [arguments]: Add 'fix-tests' phase. [inputs]: Move fenics and python-matplotlib to propagated-inputs. Move python-pkgconfig from here... [native-inputs]: ...to here. [propagated-inputs]: Add python-deprecated (and fenics and python-matplotlib). [description]: Make description more accurate. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Disable sanity check.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[arguments]: Disable sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Remove input labels.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[inputs]: Remove labels and sort the inputs. [propagated-inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: python-vedo: Honor #:tests? flag.Paul A. Patience
* gnu/packages/python-science.scm (python-vedo)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Also remove its trailing boolean. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: fenics: Fix sanity check.Paul A. Patience
* gnu/packages/simulation.scm (fenics)[arguments]: Relax pybind11 requirement to appease the sanity check. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: fenics: Honor #:tests? flag.Paul A. Patience
* gnu/packages/simulation.scm (fenics)[arguments]: Adjust custom 'check' phase to honor the #:tests? flag. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: fenics-dolfin: Honor #:tests? flag.Paul A. Patience
* gnu/packages/simulation.scm (fenics-dolfin)[source]: Remove trailing boolean. [arguments]: Adjust custom 'check' phase to honor the #:tests? flag. While here, remove trailing booleans. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: Add Guix-Modules.Ludovic Courtès
* gnu/packages/package-management.scm (guix-modules): New variable.
2022-05-06gnu: monero-gui: Update to 0.17.3.2.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero-gui): Update to 0.17.3.2.
2022-05-06gnu: monero: Update to 0.17.3.2.Guillaume Le Vaillant
* gnu/packages/finance.scm (monero): Update to 0.17.3.2. [source]: Remove obsolete part of snippet. [arguments]: Remove trailing booleans.
2022-05-06gnu: Add dezyne.Jan (janneke) Nieuwenhuizen
* gnu/packages/dezyne.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2022-05-06gnu: mescc-tools: Update supported-systems.Jan (janneke) Nieuwenhuizen
* gnu/packages/mes.scm (mescc-tools)[supported-systems]: Add riscv32-linux, riscv64-linux, remove powerpc64le-linux.
2022-05-06gnu: links: Use gexps.Efraim Flashner
* gnu/packages/web-browsers.scm (links)[arguments]: Rewrite using gexps.
2022-05-06gnu: links: Remove input labels.Efraim Flashner
* gnu/packages/web-browsers.scm (links)[inputs]: Remove input labels.
2022-05-06gnu: links: Use configure-flags.Efraim Flashner
* gnu/packages/web-browsers.scm (links)[arguments]: Add configure-flags field. Adjust custom 'configure phase to use configure-flags.
2022-05-06gnu: links: Update to 2.26.Efraim Flashner
* gnu/packages/web-browsers.scm (links): Update to 2.26.
2022-05-06gnu: ncdu-2: Update to 2.1.2.Efraim Flashner
* gnu/packages/ncdu.scm (ncdu-2): Update to 2.1.2.
2022-05-06gnu: Add python-ipydatawidgets.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-ipydatawidgets): New variable.
2022-05-06gnu: Add python-xyzservices.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-xyzservices): New variable.
2022-05-06gnu: Add python-mercantile.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-mercantile): New variable.
2022-05-06gnu: Add python-ipympl.Ricardo Wurmus
* gnu/packages/jupyter.scm (python-ipympl): New variable.
2022-05-06gnu: Add python-traittypes.Ricardo Wurmus
* gnu/packages/python-science.scm (python-traittypes): New variable.
2022-05-06gnu: cava: Fix build failureDaniel Meißner
* gnu/packages/audio.scm (cava)[source]: Remove bundled iniparser. (cava)[inputs]: Add iniparser. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: cava: Use G-expressions.Daniel Meißner
* gnu/packages/audio.scm (cava)[arguments]: Use G-expressions. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: nftables: Update to 1.0.2.kiasoc5
* gnu/packages/patches/nftables-fix-makefile.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (nftables): Update to 1.0.2. [source]: Add patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: Add python-arpeggio.Vincent Prat
* gnu/packages/python-xyz.scm (python-arpeggio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: ytfzf: Update to 2.3.Michael Rohleder
* gnu/packages/patches/ytfzf-programs.patch, * gnu/packages/patches/ytfzf-updates.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): Unregister them. * gnu/packages/image-viewers.scm (ytfzf): Update to 2.3. [source]: Delete patches. [arguments]: Remove phase 'patch-script. Add phase 'install-addons, 'wrap-program. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-06gnu: slurm: Add 21.08.8.Ludovic Courtès
* gnu/packages/parallel.scm (slurm): Update to 21.08.8. (slurm-20.11): New variable.
2022-05-06gnu: slurm: Update to 20.11.9 [fixes CVE-2022-{29500,29501,29502}].Ludovic Courtès
* gnu/packages/parallel.scm (slurm): Update to 20.11.9.
2022-05-06gnu: python-ipython: Add missing input.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-ipython)[propagated-inputs]: Add python-decorator.
2022-05-06gnu: python-traitlets: Update to 5.1.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-traitlets): Update to 5.1.1. [propagated-inputs]: Remove python-ipython-genutils, python-decorator, and python-six.
2022-05-06gnu: Add python-kneed.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-kneed): New variable.
2022-05-06gnu: Add python-databases.Ricardo Wurmus
* gnu/packages/databases.scm (python-databases): New variable.
2022-05-06gnu: python-anyio: Update to 3.5.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-anyio): Update to 3.5.0. [arguments]: Remove phase 'fix-compatibility; disable one more test. [propagated-inputs]: Add python-contextvars and python-dataclasses. [native-inputs]: Add python-contextlib2 and python-trio; remove python-iniconfig.
2022-05-06gnu: python-multipart: Fix test failure due to PyYAML 6.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-multipart)[arguments]: Patch instance of yaml.load.
2022-05-05gnu: Add byacc.Foo Chuan Wei
* gnu/packages/c.scm (byacc): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-05transformations: Preserve transformation order in package property.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/54942>. Reported by SeerLite <seerlite@nixnet.email>. * guix/transformations.scm (options->transformation) [package-with-transformation-properties]: Add call to 'reverse'. * tests/transformations.scm ("options->transformation, property order"): New test.
2022-05-05gnu: b4: Update to 0.8.0.Ludovic Courtès
* gnu/packages/version-control.scm (b4): Update to 0.8.0.
2022-05-05gnu: Add n2p2.Pierre-Antoine Bouttier
* gnu/packages/maths.scm (n2p2): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-05-05gnu: icedove: Update to 91.9.0 [fixes CVE-2022-1520].Jonathan Brielmaier
* gnu/packages/gnuzilla.scm (icedove): Update to 91.9.0.
2022-05-05gnu: python-pari-jupyter: Update to 1.4.1.Andreas Enge
* gnu/packages/python-xyz.scm (python-pari-jupyter): Update to 1.4.1. [home-page]: Update after maintainer change.
2022-05-05gnu: cm: Update to 0.4.0.Andreas Enge
* gnu/packages/algebra.scm (cm): Update to 0.4.0.
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