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2019-12-17gnu: r-seurat: Update to 3.1.2....* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.1.2. Ricardo Wurmus
2019-12-17gnu: r-bh: Update to 1.72.0-1....* gnu/packages/statistics.scm (r-bh): Update to 1.72.0-1. Ricardo Wurmus
2019-12-17gnu: Add r-tab....* gnu/packages/cran.scm (r-tab): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-gee....* gnu/packages/cran.scm (r-gee): New variable. Ricardo Wurmus
2019-12-17gnu: shotwell: Clean-up inputs....* gnu/packages/gnome.scm (shotwell)[arguments]: Add phase to skip gtk-update-icon-cache. [inputs]: Sort alphabetically. Move glib:bin ... [native-inputs]: ... to here. Remove desktop-file-utils, gtk+:bin. Efraim Flashner
2019-12-17gnu: dia: Fix version number....This commit is actually after to 0.97.3 release. * gnu/packages/gnome.scm (dia)[version]: Use git-version. [source]: Update to new source uri. Use git-file-name. Efraim Flashner
2019-12-17gnu: dia: Don't override bootstrap phase....* gnu/packages/gnome.scm (dia)[arguments]: Remove custom 'run-autogen phgase. Add phase before 'bootstrap to not run configure. Efraim Flashner
2019-12-17gnu: dia: Fix-up inputs....* gnu/packages/gnome.scm (dia)[inputs]: Sort alphabetically. Move glib:bin ... [native-inputs]: ... to here. Sort alphabetically. Efraim Flashner
2019-12-17gnu: libidl: Hard-code name in source uri....* gnu/packages/gnome.scm (libidl)[source]: Hard-code name. Efraim Flashner
2019-12-17gnu: libidl: Set upstream name....* gnu/packages/gnome.scm (libidl)[properties]: New field. Efraim Flashner
2019-12-17gnu: brasero: Update home-page....* gnu/packages/gnome.scm (brasero)[home-page]: Use new home-page. Efraim Flashner
2019-12-17gnu: brasero: Fix-up inputs....* gnu/packages/gnome.scm (brasero)[inputs]: Move itstool ... [native-inputs]: ... to here. Efraim Flashner
2019-12-17gnu: brasero: Hard-code name in source uri....* gnu/packages/gnome.scm (brasero)[source]: Hard-code name. Efraim Flashner
2019-12-17gnu: pinfo: Use a source file name....* gnu/packages/texinfo.scm (pinfo)[source]: Add 'file-name'. Efraim Flashner
2019-12-16gnu: electron-cash: Use substitute-keyword-arguments from electrum....* gnu/packages/finance (electron-cash)[arguments]: Use substitute-keyword-arguments to re-use arguments from electrum. Vagrant Cascadian
2019-12-16gnu: electron-cash: Update to 4.0.12....* gnu/packages/finanace (electron-cash): Update to 4.0.12. [source] switch to git. [inputs] Add libsecp256k1. [arguments] Add phase patching to use libsecp256k1 from inputs. Vagrant Cascadian
2019-12-16gnu: libsecp256k1: Update to 20191213....* gnu/packages/crypto (libsecp256k1): Update to 20191213. Vagrant Cascadian
2019-12-16gnu: python-gffutils: Update description....* gnu/packages/bioinformatics.scm (python-gffutils)[description]: Reflow paragraph and fix spelling of SQLite. Ricardo Wurmus
2019-12-16gnu: Add python-gffutils....* gnu/packages/bioinformatics.scm (python-gffutils): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2019-12-16gnu: Remove python2-dask....This package can no longer be built with Python 2. * gnu/packages/python-xyz.scm (python2-dask): Remove variable. Ricardo Wurmus
2019-12-16gnu: python-dask: Update to 2.9.0....* gnu/packages/python-xyz.scm (python-dask): Update to 2.9.0. [arguments]: Adjust phase to disable broken tests. [propagated-inputs]: Add python-fsspec and python-packaging. Ricardo Wurmus
2019-12-16gnu: Add python-fsspec....* gnu/packages/python-xyz.scm (python-fsspec): New variable. Ricardo Wurmus
2019-12-16gnu: python-pyfaidx: Update to 0.5.7....* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.5.7. Mădălin Ionel Patrașcu
2019-12-16gnu: guix-data-service: Update to 0.0.1-8.a019a5e....* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-8.a019a5e. Christopher Baines
2019-12-16Revert "gnu: ccls: Configure using -isystem for header files."...This reverts commit 2c82d4ad10de8e0ba462d81401385c5e7499f6e2. Brett Gilio
2019-12-16Revert "gnu: ccls: Adjust indentation"...This reverts commit 3c80b07a0b4a2f1c2702acd6896f94892c516709. Brett Gilio
2019-12-16gnu: Add python-argh....* gnu/packages/python-xyz.scm (python-argh): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2019-12-16gnu: Add python-iocapture....* gnu/packages/python-xyz.scm (python-iocapture): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Mădălin Ionel Patrașcu
2019-12-16gnu: gash: Update to 0.2.0....* gnu/packages/shells.scm (gash): Update to 0.2.0. Jan Nieuwenhuizen
2019-12-16gnu: psmisc: Fix cross-compilation....* gnu/packages/linux.scm (psmisc)[arguments]: Pass ac_cv_func_malloc_0_nonnull=yes and ac_cv_func_realloc_0_nonnull=yes options that are required when cross-compiling. Mathieu Othacehe
2019-12-16gnu: iw: Fix cross-compilation....* gnu/packages/linux.scm (iw)[arguments]: Set PKG_CONFIG and CC variables correctly for cross-compilation. Mathieu Othacehe
2019-12-16gnu: yoshimi: Update to 1.6.1....* gnu/packages/music.scm (yoshimi): Update to 1.6.1. Ricardo Wurmus
2019-12-16gnu: emacs-helm-fish-completion: Update to 0.2....* gnu/packages/emacs-xyz.scm (emacs-helm-fish-completion): Update to 0.2. Pierre Neidhardt
2019-12-16Revert "gnu: info-reader: Fix cross-compilation."...This reverts commit 614a1e3fa2d731d4719f03912b1b87fb4fd309cb. This is broken on master with the following error: output (`/gnu/store/6rnhfi8zrdajbahbq9ii8bpj7mwfcjba-info-reader-6.6') is not allowed to refer to path `/gnu/store/ziinjmbnq004866mwjrczsk12wf35qb8-perl-5.30.0' build of /gnu/store/nnfvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv failed View build log at '/var/log/guix/drvs/nn/fvr10713khxp1bkbpwi5wxbj8cm4wb-info-reader-6.6.drv.bz2'. Mathieu Othacehe
2019-12-16gnu: libreoffice: Update to 6.3.4.2....* gnu/packages/libreoffice.scm (libreoffice): Update to 6.3.4.2. Efraim Flashner
2019-12-16gnu: guile-studio: Update to 0.0.2....* gnu/packages/guile-xyz.scm (guile-studio): Update to 0.0.2. [arguments]: Only include emacs inputs in INPUTS make flag. Ricardo Wurmus
2019-12-16gnu: ccls: Adjust indentation...* gnu/packages/cpp.scm (ccls): Adjust indentation. Brett Gilio
2019-12-16gnu: ccls: Configure using -isystem for header files....* gnu/packages/cpp.scm (ccls): Configure using -isystem for header files. [arguments]: Use GCC as a build input for preprocessing and searching GCC subdirectories, this provides better support for header file completion on runtime. [inputs]: Add ncurses for command-line support. Remove LLVM, it is not needed. [native-inputs]: Move rapidjson from inputs to native-inputs, add GCC. Brett Gilio
2019-12-15gnu: Add python-sphinx-intl...* gnu/packages/sphinx.scm (python-sphinx-intl): New variable. Signed-off-by: Brett Gilio <brettg@posteo.net> Alexandros Theodotou
2019-12-15gnu: Add emacs-eww-lnum....* gnu/packages/emacs-xyz.scm (emacs-eww-lnum): New variable. Nicolas Goaziou
2019-12-15gnu: Add pinfo....* gnu/packages/texinfo.scm (pinfo): New variable. Ricardo Wurmus
2019-12-15gnu: r-quantreg: Update to 5.54....* gnu/packages/statistics.scm (r-quantreg): Update to 5.54. Ricardo Wurmus
2019-12-15gnu: r-glmnet: Update to 3.0-2....* gnu/packages/statistics.scm (r-glmnet): Update to 3.0-2. Ricardo Wurmus
2019-12-15gnu: r-sparsem: Update to 1.78....* gnu/packages/statistics.scm (r-sparsem): Update to 1.78. [inputs]: Move gfortran from here... [native-inputs]: ...to here. Ricardo Wurmus
2019-12-15gnu: r-segmented: Update to 1.1-0....* gnu/packages/statistics.scm (r-segmented): Update to 1.1-0. Ricardo Wurmus
2019-12-15gnu: r-rmarkdown: Update to 2.0....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.0. Ricardo Wurmus
2019-12-15gnu: r-dbi: Update to 1.1.0....* gnu/packages/statistics.scm (r-dbi): Update to 1.1.0. Ricardo Wurmus
2019-12-15gnu: r-plyr: Update to 1.8.5....* gnu/packages/statistics.scm (r-plyr): Update to 1.8.5. [native-inputs]: Move r-rcpp from here... [propagated-inputs]: ...to here. Ricardo Wurmus
2019-12-15gnu: r-nlme: Update to 3.1-143....* gnu/packages/statistics.scm (r-nlme): Update to 3.1-143. Ricardo Wurmus
2019-12-15gnu: r-spam: Update to 2.5-1....* gnu/packages/cran.scm (r-spam): Update to 2.5-1. Ricardo Wurmus
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