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2018-02-13gnu: r-biomart: Update to 2.34.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.2.
2018-02-13gnu: r-genomicranges: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.1.
2018-02-13gnu: r-limma: Update to 3.34.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.8.
2018-02-13gnu: r-variantannotation: Update to 1.24.5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.24.5.
2018-02-13gnu: r-edger: Update to 3.20.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.8.
2018-02-13gnu: r-bookdown: Update to 0.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.6. [propagated-inputs]: Add r-xfun and ghc-pandoc.
2018-02-13gnu: r-vegan: Update to 2.4-6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-6.
2018-02-13gnu: r-drr: Update to 0.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-drr): Update to 0.0.3.
2018-02-13gnu: r-lava: Update to 1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-lava): Update to 1.6. [propagated-inputs]: Add r-squarem.
2018-02-13gnu: r-sp: Update to 1.2-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.2-7.
2018-02-13gnu: r-proxy: Update to 0.4-21.Ricardo Wurmus
* gnu/packages/cran.scm (r-proxy): Update to 0.4-21.
2018-02-13gnu: r-hexbin: Update to 1.27.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hexbin): Update to 1.27.2.
2018-02-13gnu: r-dendextend: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.7.0.
2018-02-13gnu: r-ddalpha: Update to 1.3.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ddalpha): Update to 1.3.1.1.
2018-02-13gnu: r-recipes: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-recipes): Update to 0.1.2.
2018-02-13gnu: r-pracma: Update to 2.1.4.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
2018-02-13gnu: Add r-uuid.Ricardo Wurmus
* gnu/packages/cran.scm (r-uuid): New variable.
2018-02-13gnu: Add r-pillar.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): New variable.
2018-02-13gnu: Add r-utf8.Ricardo Wurmus
* gnu/packages/cran.scm (r-utf8): New variable.
2018-02-13gnu: Add r-squarem.Ricardo Wurmus
* gnu/packages/cran.scm (r-squarem): New variable.
2018-02-13gnu: r-shape: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-shape): Update to 1.4.4.
2018-02-13gnu: r-rcpp: Update to 0.12.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcpp): Update to 0.12.15.
2018-02-13gnu: Add r-xfun.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): New variable.
2018-02-13gnu: unzip: Mitigate CVE-2018-1000035.Leo Famulari
* gnu/packages/compression.scm (unzip)[replacement]: New field. (unzip/fixed): New variable.
2018-02-13gnu: Add ghc-megaparsec.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-megaparsec): New variable.
2018-02-13gnu: Add ghc-parser-combinators.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-parser-combinators): New variable.
2018-02-13gnu: Add ghc-text-binary.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-text-binary): New variable.
2018-02-13gnu: ghc-trifecta: Update to 1.7.1.1.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-trifecta): Update to 1.7.1.1. [inputs]: Add ghc-doctest. [native-inputs]: Add cabal-doctest.
2018-02-13gnu: ghc-reducers: Update to 3.12.2.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-reducers): Update to 3.12.2.
2018-02-13gnu: ghc-directory: Add note.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-directory): Add comment not to use this package as an input.
2018-02-13gnu: darcs: Update to 2.12.5.Ricardo Wurmus
* gnu/packages/version-control.scm (darcs): Update to 2.12.5. [arguments]: Relax version constraint on shelly.
2018-02-13gnu: darcs: Remove ghc-directory from inputs.Ricardo Wurmus
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-directory.
2018-02-13gnu: ghc-graphviz: Fix build with newer QuickCheck.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-graphviz)[arguments]: Allow building with newer QuickCheck.
2018-02-13gnu: ghc-tar: Disable tests.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-tar)[arguments]: Disable tests.
2018-02-13gnu: ghc-system-filepath: Update to 0.4.14.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-system-filepath): Update to 0.4.14. [arguments]: Disable tests.
2018-02-13gnu: darcs: Remove ghc-process from inputs.Ricardo Wurmus
* gnu/packages/version-control.scm (darcs)[inputs]: Remove ghc-process.
2018-02-13gnu: ghc-hslogger: Remove ghc-process from inputs.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-hslogger)[inputs]: Remove ghc-process.
2018-02-13gnu: ghc-process: Update to 1.6.3.0.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-process): Update to 1.6.3.0.
2018-02-13gnu: ghc-haskeline: Update to 0.7.4.2.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-haskeline): Update to 0.7.4.2. [inputs]: Add ghc-stm.
2018-02-13gnu: ghc-fgl-arbitrary: Fix build with newer QuickCheck.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-fgl-arbitrary)[arguments]: Allow building with newer QuickCheck.
2018-02-13gnu: ghc-fgl: Fix build with newer QuickCheck.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-fgl)[arguments]: Allow building with newer QuickCheck.
2018-02-13gnu: ghc-pandoc-citeproc: Update to 0.12.2.5.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pandoc-citeproc): Update to 0.12.2.5.
2018-02-13gnu: ghc-hs-bibutils: Update to 6.2.0.1.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-hs-bibutils): Update to 6.2.0.1.
2018-02-13gnu: ghc-pandoc: Update to 2.0.6.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pandoc): Update to 2.0.6. [inputs]: Add ghc-aeson-pretty, ghc-cmark-gfm, ghc-doctemplates, ghc-glob, ghc-hslua-module-text, ghc-old-locale, ghc-skylighting, and ghc-split; remove ghc-ansi-terminal, ghc-cmark, ghc-extensible-exceptions, ghc-filemanip, ghc-highlighting-kate, and ghc-old-time. [native-inputs]: Remove ghc-test-framework, ghc-test-framework-hunit, and ghc-test-framework-quickcheck2; add ghc-tasty, ghc-tasty-golden, ghc-tasty-hunit, and ghc-tasty-quickcheck.
2018-02-13gnu: ghc-monad-control: Update to 1.0.1.0.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-monad-control): Update to 1.0.1.0.
2018-02-13gnu: ghc-optparse-applicative: Update to 0.13.0.0.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-optparse-applicative): Update to 0.13.0.0. [arguments]: Disable tests. [native-inputs]: Add ghc-quickcheck.
2018-02-13gnu: ghc-connection: Update to 0.2.6.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-connection): Update to 0.2.6.
2018-02-13gnu: ghc-socks: Update to 0.5.5.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-socks): Update to 0.5.5.
2018-02-13gnu: ghc-hourglass: Update to 0.2.10.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-hourglass): Update to 0.2.10.
2018-02-13gnu: ghc-mockery: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-mockery): Update to 0.3.3. [inputs]: Add ghc-base-compat.
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