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2023-01-10services: git-daemon: Deprecate 'git-daemon-service' procedure.Bruno Victal
* gnu/services/version-control.scm (git-daemon-service): Define with 'define-deprecated' * doc/guix.texi (Version Control Services): Replace with 'git-daemon-service-type' Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-10gnu: neovim: Update to 0.8.2.Luis Henrique Gomes Higino
* gnu/packages/vim.scm (neovim): Update to 0.8.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-10gnu: gromacs: Remove input labels and use gexps.Ludovic Courtès
* gnu/packages/chemistry.scm (gromacs)[arguments]: Turn into gexps. [native-inputs]: Remove labels. Remove (package-source googletest).
2023-01-10gnu: gromacs: Update to 2022.4.Ludovic Courtès
* gnu/packages/chemistry.scm (gromacs): Update to 2022.4. * gnu/packages/patches/gromacs-tinyxml2.patch: Adjust accordingly.
2023-01-10gnu: keepassxc: Enable wayland support.Jonathan Brielmaier
* gnu/packages/password-utils.scm (keepassxc)[inputs]: Add qtwayland-5.
2023-01-10gnu: Add ftxui.Artyom V. Poptsov
* gnu/packages/cpp.scm (ftxui): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2023-01-08gnu: bind: Update to 9.16.36.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (isc-bind): Update to 9.16.36.
2023-01-08gnu: linux-libre: Bump max-silent-time even further.Tobias Geerinckx-Rice
Aarch64 CI build still fail with ‘timed out after 3600 seconds of silence’. * gnu/packages/linux.scm (make-linux-libre*): Increase the max-silent-time to 3 hours. Reported by akirakyle in #guix.
2023-01-08gnu: emacs-hsluv: Name git checkout.Tobias Geerinckx-Rice
* gnu/packages/emacs-xyz.scm (emacs-hsluv)[source]: Specify a FILE-NAME.
2023-01-08gnu: emacs-hide-lines: Name git checkout.Tobias Geerinckx-Rice
* gnu/packages/emacs-xyz.scm (emacs-hide-lines)[source]: Specify a FILE-NAME.
2023-01-08gnu: emacs-syslog-mode: Name git checkout.Tobias Geerinckx-Rice
* gnu/packages/emacs-xyz.scm (emacs-syslog-mode)[source]: Specify a FILE-NAME.
2023-01-08doc: Fix <openntpd-configuration> openntpd default.Tobias Geerinckx-Rice
* doc/guix.texi (Networking Services): <openntpd-configuration>'s openntpd field takes a package: it does not default to a FILE-APPEND call.
2023-01-08gnu: fbcat: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (fbcat)[description]: Fix ‘therof’. Add newline.
2023-01-10gnu: perftest: Update to 4.5-0.20.Marius Bakke
* gnu/packages/linux.scm (perftest): Update to 4.5-0.20. [source]: Switch to GIT-FETCH. [arguments]: Remove. [native-inputs]: Add AUTOCONF, AUTOMAKE, and LIBTOOL. [inputs]: Add PCIUTILS.
2023-01-10gnu: lib3mf: Update to 2.2.0.Marius Bakke
* gnu/packages/engineering.scm (lib3mf): Update to 2.2.0.
2023-01-10gnu: lib3mf: Remove bundled software.Marius Bakke
* gnu/packages/engineering.scm (lib3mf)[source](snippet): Delete bundled copies of libzip and zlib. Adjust header inclusions.
2023-01-10gnu: lib3mf: Remove input labels.Marius Bakke
* gnu/packages/engineering.scm (lib3mf)[inputs]: Remove labels.
2023-01-10gnu: lib3mf: Remove bundled ACT.Marius Bakke
* gnu/packages/engineering.scm (lib3mf)[source](modules, snippet): New fields. [arguments]: Add phase to provide act binary. [native-inputs]: Add AUTOMATIC-COMPONENT-TOOLKIT.
2023-01-10gnu: Add automatic-component-toolkit.Marius Bakke
* gnu/packages/code.scm (automatic-component-toolkit): New variable.
2023-01-09gnu: r-biocset: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.12.1.
2023-01-09gnu: r-biocviews: Update to 1.66.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.66.2.
2023-01-09gnu: r-variancepartition: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.28.1. [propagated-inputs]: Add r-remacor.
2023-01-09gnu: r-flowworkspace: Update to 4.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.10.1. [propagated-inputs]: Remove r-aws-s3, r-aws-signature, r-digest, r-lattice, r-latticeextra, r-rcpp, r-rcpparmadillo, and r-rcppparallel; add r-cpp11.
2023-01-09gnu: r-batchelor: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.14.1.
2023-01-09gnu: r-msnbase: Update to 2.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.24.2.
2023-01-09gnu: r-genomeinfodb: Update to 1.34.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.34.6.
2023-01-09gnu: r-bsgenome: Update to 1.66.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome): Update to 1.66.2.
2023-01-09gnu: r-biocparallel: Update to 1.32.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.32.5.
2023-01-09gnu: Add r-remacor.Ricardo Wurmus
* gnu/packages/cran.scm (r-remacor): New variable.
2023-01-09gnu: Add r-clustergeneration.Ricardo Wurmus
* gnu/packages/cran.scm (r-clustergeneration): New variable.
2023-01-09gnu: Update copyright header.Ricardo Wurmus
* gnu/packages/cran.scm: Update copyright header.
2023-01-09import/cran: Fix Bioconductor updater.Ricardo Wurmus
* guix/import/cran.scm (latest-bioconductor-release): Use LATEST-VERSION instead of VERSION, which is always #F.
2023-01-09gnu: r-fpc: Update to 2.2-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-10.
2023-01-09gnu: r-statmod: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.5.0.
2023-01-09gnu: r-sendmailr: Update to 1.3-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sendmailr): Update to 1.3-2.
2023-01-09gnu: r-bien: Update to 1.2.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-bien): Update to 1.2.6. [propagated-inputs]: Remove r-rgdal, r-rgeos, and r-sp; add r-terra.
2023-01-09gnu: r-rtweet: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rtweet): Update to 1.1.0. [propagated-inputs]: Add r-httr2.
2023-01-09gnu: r-mlr3learners: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3learners): Update to 0.5.6.
2023-01-09gnu: r-qtl: Update to 1.58.Ricardo Wurmus
* gnu/packages/cran.scm (r-qtl): Update to 1.58.
2023-01-09gnu: r-tidytext: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-tidytext): Update to 0.4.1.
2023-01-09gnu: r-forecast: Update to 8.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-forecast): Update to 8.20.
2023-01-09gnu: r-qqconf: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-qqconf): Update to 1.3.1.
2023-01-09gnu: r-gkmsvm: Update to 0.82.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gkmsvm): Update to 0.82.0.
2023-01-09gnu: r-lavaan: Update to 0.6-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-13.
2023-01-09gnu: r-rncl: Update to 0.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-rncl): Update to 0.8.7.
2023-01-09gnu: r-fmsb: Update to 0.7.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-fmsb): Update to 0.7.5.
2023-01-09gnu: r-rgl: Update to 0.111.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 0.111.6.
2023-01-09gnu: r-ncdf4: Update to 1.21.Ricardo Wurmus
* gnu/packages/cran.scm (r-ncdf4): Update to 1.21.
2023-01-09gnu: r-afex: Update to 1.2-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-afex): Update to 1.2-1.
2023-01-09gnu: r-raster: Update to 3.6-13.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.6-13.
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