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2018-04-30Merge branch 'master' into core-updatesMark H Weaver
2018-04-30gnu: icecat: Add more fixes from upstream mozilla-esr52....* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. * gnu/packages/patches/icecat-bug-1452075.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Mark H Weaver
2018-04-30Merge branch 'master' into core-updatesMark H Weaver
2018-04-29gnu: Add java-apache-ivy....* gnu/package/java.scm (java-apache-ivy): New variable. * gnu/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Julien Lepiller
2018-04-26gnu: scotch: Update to 6.0.5a....* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files. * gnu/packages/patches/scotch-build-parallelism.patch, gnu/packages/patches/scotch-graph-diam-64.patch, gnu/packages/patches/scotch-graph-induce-type-64.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/maths.scm (scotch): Update to 6.0.5a. [source](patches): Adjust accordingly. Eric Bavier
2018-04-27gnu: quassel: Update to 0.12.5....* gnu/packages/irc.scm (quassel): Update to 0.12.5. [source]: Remove patch. * gnu/packages/patches/quassel-fix-tls-check.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-04-27gnu: pcmanfm: Update to 1.3.0....* gnu/packages/lxde.scm (pcmanfm): Update to 1.3.0. [source]: Remove patch. * gnu/packages/patches/pcmanfm-CVE-2017-8934.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-04-27gnu: bcftools: Update to 1.8....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.8. * gnu/local.mk: Remove patch. * gnu/packages/patches/bcftools-regidx-unsigned-char.patch: Remove file. Roel Janssen
2018-04-26gnu: zsh: Update to 5.5.1....* gnu/packages/shells.scm (zsh): Update to 5.5.1. [source]: Remove obsolete patches. * gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Leo Famulari
2018-04-24gnu: qemu: Update to 2.12.0....* gnu/packages/patches/qemu-CVE-2018-7550.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/virtualization.scm (qemu): Update to 2.12.0. [source](patches): Remove. Marius Bakke
2018-04-21Merge branch 'master' into core-updatesMark H Weaver
2018-04-18gnu: qemu: Fix CVE-2018-7550....* gnu/packages/patches/qemu-CVE-2018-7550.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Use it. Leo Famulari
2018-04-17gnu: libmygpo-qt: Update to 1.1.0....* gnu/packages/music.scm (libmygpo-qt): Update to 1.1.0. [source]: Remove 'patches'. [arguments]: Do not set BUILD_WITH_QT4=OFF, it is the default. * gnu/packages/patches/libmygpo-qt-fix-jsoncreatortest.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Pierre Langlois
2018-04-16gnu: sharutils: Fix CVE-2018-1000097....* gnu/packages/patches/sharutils-CVE-2018-1000097.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/compression.scm (sharutils)[source](patches): Use it. Marius Bakke
2018-04-15gnu: mupen64plus-video-z64: Fix glew.h location....* gnu/packages/patches/mupen64plus-video-z64-glew-correct-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emulators.scm (mupen64plus-video-z64)[source]: Use it. Manolis Ragkousis
2018-04-15gnu: htop: Update to 2.2.0....* gnu/packages/patches/htop-fix-process-tree.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/admin.scm (htop): Update to 2.2.0. [source](patches): Remove. Marius Bakke
2018-04-13gnu: Add missing freeimage patch....This is a follow-up to a5d4c96b8d90b8bb87e07bd6a7be78991db91bc9. * gnu/packages/patches/freeimage-unbundle.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2018-04-12gnu: datamash: Fix tests on ARM systems....* gnu/packages/patches/datamash-arm-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/datamash.scm (datamash)[source]: Use it. Eric Bavier
2018-04-12gnu: cool-retro-term: Update to 1.0.1....* gnu/packages/terminals.scm (cool-retro-term): Update to 1.0.1. [source]: Programmatically remove fonts. [arguments]: Simplify 'configure phase and use 'invoke'. Add 'install-man phase. 'let*' -> 'let' where possible. * gnu/packages/patches/cool-retro-term-remove-non-free-fonts.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove it. Eric Bavier
2018-04-10gnu: qemu: Fix build with glibc-2.27....* gnu/packages/patches/qemu-glibc-2.27.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/virtualization.scm (qemu)[source]: Add patch. [native-inputs]: Add flex and bison. * gnu/packages/bootloaders.scm (qemu-minimal-2.10)[source]: Add patch. Mark H Weaver
2018-04-10gnu: btrfs-progs: Update to 4.15.1, fix build, use invoke....* gnu/packages/patches/btrfs-progs-e-value-block.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (btrfs-progs): Update to 4.15.1. [arguments]: Use invoke. [native-inputs]: Add grep. Mark H Weaver
2018-04-10gnu: boost: Fix ICU support....* gnu/packages/patches/boost-fix-icu-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/boost.scm (boost)[source]: Add the patch. [arguments]: In the custom configure phase, pass --with-icu=[...] to ./bootstrap.sh Mark H Weaver
2018-04-10Merge branch 'master' into core-updatesMark H Weaver
2018-04-06gnu: llvm, clang: Update to 6.0.0....* gnu/packages/llvm.scm (llvm, clang-runtime, clang): Update to 6.0.0. (clang-from-llvm)(patches): Set to empty list. [arguments]: Adjust substitutions depending on major version. (llvm-3.8, clang-runtime-3.8, clang-3.8): New public variables. (clang-3.7, clang-3.6, clang-3.5)(patches): Add 'clang-3.5-libc-search-path.patch'. (clang-3.9.1)(patches): Add 'clang-3.8-libc-search-path.patch'. * gnu/packages/patches/clang-6.0-libc-search-path.patch: New file. * gnu/packages/patches/clang-libc-search-path.patch: Rename to ... * gnu/packages/patches/clang-3.5-libc-search-path.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2018-04-04gnu: 4store: Remove preprocessor directive....* gnu/packages/databases.scm (4store): Add patch to remove preprocessor directive. * gnu/packages/patches/4store-unset-preprocessor-directive.patch: New file. * gnu/local.mk: Register patch. Roel Janssen
2018-04-02gnu: libgpg-error: Fix building on aarch64-linux....* gnu/packages/patches/gnupg.scm (libgpg-error)[source]: Add patch. * gnu/packages/patches/libgpg-error-aarch64-logging-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2018-04-01gnu: glibc: Reinstate fallback code for systems lacking 'prlimit64'....* gnu/packages/patches/glibc-reinstate-prlimit64-fallback.patch: New file. * gnu/packages/base.scm (glibc/linux)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2018-03-31gnu: python-pycairo: Update to 1.16.3....* gnu/packages/gtk.scm (python-pycairo): Update to 1.16.3. [source]: Remove patch. [build-system]: Switch to python-build-system. [native-inputs]: Remove python-waf. [home-page]: Use HTTPS URI. * gnu/packages/patches/pycairo-wscript.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Arun Isaac
2018-03-30gnu: Add delly....* gnu/packages/bioinformatics.scm (delly): New variable. * gnu/packages/patches/delly-use-system-libraries.patch: New file. * gnu/local.mk: Include delly-use-system-libraries.patch. Signed-off-by: Leo Famulari <leo@famulari.name> Roel Janssen
2018-03-29Merge branch 'master' into core-updatesMarius Bakke
2018-03-29gnu: util-linux: Update to 2.32....* gnu/packages/patches/util-linux-tests.patch: Adjust context. * gnu/packages/patches/util-linux-CVE-2018-7738.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/linux.scm (util-linux): Update to 2.32. [source](patches): Remove 'util-linux-CVE-2018-7738.patch'. Marius Bakke
2018-03-28gnu: elogind: Fix build with glibc-2.27....* gnu/packages/patches/elogind-glibc-2.27.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/freedesktop.scm (elogind)[source]: Add patch. [arguments]: Replace the bootstrap phase with what was previously the autogen phase. Mark H Weaver
2018-03-27gnu: mupdf: Fix CVE-2018-{6544,1000051}....* gnu/packages/patches/mupdf-CVE-2018-1000051.patch, gnu/packages/patches/mupdf-CVE-2018-6544.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/pdf.scm (mupdf)[source]: Use them. Leo Famulari
2018-03-26gnu: translate-shell: Update to 0.9.6.7....* gnu/packages/patches/translate-shell-fix-curl-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/dictionaries.scm (translate-shell): Update to 0.9.6.7. [source](patches): Add it. [home-page]: Append slash. Oleg Pykhalov
2018-03-26gnu: hwloc@2: Update to 2.0.1....* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.1. [source]: Remove 'patches'. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Ludovic Courtès
2018-03-26gnu: classpath: Add aarch64-linux support....* gnu/packages/java.scm (classpath-bootstrap, classpath-0.99)[source]: Add patch. * gnu/packages/patches/classpath-aarch64-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2018-03-25gnu: Add pure....* gnu/packages/pure.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Danny Milosavljevic
2018-03-25gnu: pulseaudio: Fix build with glibc-2.27....* gnu/packages/patches/pulseaudio-glibc-2.27.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pulseaudio.scm (pulseaudio)[source]: Add the patch. [arguments]: Replace 'bootstrap' phase. [native-inputs]: Add autoconf, automake, and libtool. Mark H Weaver
2018-03-25gnu: links: Update to 2.15....* gnu/packages/web-browsers.scm (links): Update to 2.15. [source]: Remove patch for fixed CVE. * gnu/packages/patches/links-CVE-2017-11114.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-03-23gnu: cmake: Update to 3.10.2....* gnu/packages/cmake.scm (cmake): Update to 3.10.2. [source]: Remove cmake-fix-tests patch. Do not remove bundled cmlibuv. [arguments]: Replace system* with invoke. [inputs]: Add rhash. Sort. [home-page]: Update URL. * gnu/packages/patches/cmake-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Arun Isaac
2018-03-22gnu: Add lyx....* gnu/packages/patches/lyx-2.2.3-fix-test.patch: New file. * gnu/local.mk: Add it. * gnu/packages/tex.scm (lyx): New variable. Danny Milosavljevic
2018-03-22gnu: make: Fix compatibility with glibc 2.27....* gnu/packages/patches/make-glibc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/base.scm (gnu-make)[source](patches): Use it. Marius Bakke
2018-03-22gnu: glibc: Update to 2.27....* gnu/packages/base.scm (glibc/linux): Update to 2.27. [source](patches): Add 'glibc-hidden-visibility-ldconfig.patch' and 'glibc-2.27-git-fixes.patch'. [native-inputs]: Add BISON. [arguments]: Remove deprecated "--enable-add-ons" from #:configure-flags. Also remove unneeded "libc_cv_ssp=no" and "libcv_ssp_strong=no". (glibc-2.26): New public variable. * gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]: Add BISON-BOOT0. * gnu/packages/patches/glibc-2.27-git-fixes.patch, gnu/packages/patches/glibc-hidden-visibility-ldconfig.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them. Marius Bakke
2018-03-22gnu: shepherd: Update to 0.4.0....* gnu/packages/admin.scm (shepherd): Update to 0.4.0. Remove patches. * gnu/packages/patches/shepherd-close-fds.patch, gnu/packages/patches/shepherd-herd-status-sorted.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/services/admin.scm (%default-rotations): Remove /var/log/shepherd.log. Ludovic Courtès
2018-03-20Merge branch 'master' into core-updatesMark H Weaver
2018-03-20Merge branch 'staging'Marius Bakke
2018-03-20gnu: fontconfig: Update to 2.13.0....* gnu/packages/patches/fontconfig-remove-debug-printf.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/fontutils.scm (fontconfig): Update to 2.13.0. [source](patches): Remove. [propagated-inputs]: Add UTIL-LINUX. Marius Bakke
2018-03-20Merge branch 'master' into core-updatesMark H Weaver
2018-03-19gnu: libtirpc: Update to 1.0.3....* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3. [source]: Remove patch. * gnu/packages/patches/libtirpc-missing-headers.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2018-03-18gnu: guile-gdbm-ffi: Add support for gdbm-1.14....* gnu/packages/patches/guile-gdbm-ffi-support-gdbm-1.14.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-gdbm-ffi)[inputs]: Move above arguments. Add the patch, and the 'patch' program. [propagated-inputs]: Move above arguments. [arguments]: In the builder, add code to apply the patch. Mark H Weaver
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