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2019-12-13gnu: hdf5@1.10: Update to 1.10.5....* gnu/packages/maths.scm (hdf5-1.10): Update to 1.10.5. Remove "hdf5-mpi-deprecations.patch". * gnu/packages/patches/hdf5-mpi-deprecations.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it. Ludovic Courtès
2019-12-13Merge branch 'master' into stagingBrett Gilio
2019-12-12gnu: libnftnl: Update to 1.1.5....* gnu/packages/linux.scm (libnftnl): Update to 1.1.5. [source]: Add patch. * gnu/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2019-12-11gnu: pcre2: Update to 10.34....* gnu/packages/patches/pcre2-fix-jit_match-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/pcre.scm (pcre2): Update to 10.34. [source](patches): Remove. Marius Bakke
2019-12-11gnu: nss: Remove replacement package....The merge preceding this commit ignored the 'replacement' added to nss in commit 04b33ce205f38813b4dbd04b6ad3c7aa0be0b6f6, because the security fix is already present in NSS 3.48. This commit removes the remaining bits. * gnu/packages/patches/nss-CVE-2019-11745.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/nss.scm (nss/fixed): Remove variable. Marius Bakke
2019-12-11Merge branch 'master' into stagingMarius Bakke
2019-12-11gnu: nss: Fix CVE-2019-11745 via graft....* gnu/packages/patches/nss-CVE-2019-11745.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/nss.scm (nss/fixed): New variable. (nss)[replacement]: Add field. Mark H Weaver
2019-12-11gnu: orc: Update to 0.4.31....* gnu/packages/patches/orc-typedef-enum.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gstreamer.scm (orc): Update to 0.4.31. [source](patches): Remove. Marius Bakke
2019-12-11gnu: mesa: Update to 19.2.7....* gnu/packages/patches/mesa-timespec-test-32bit.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/gl.scm (mesa): Update to 19.2.7. [source](patches): Remove obsolete. Marius Bakke
2019-12-09gnu: guile: Add 2.2.6-1 with a finalization crash bug-fix....* gnu/packages/patches/guile-finalization-crash.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/guile.scm (guile-2.2/bug-fix): New variable. Ludovic Courtès
2019-12-09gnu: websocketpp: Add patch for Boost >= 1.70....* gnu/packages/patches/websocket-fix-for-boost-1.70.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web.scm (websocketpp): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-12-08gnu: stumpwm: Remove obsolete patch....* gnu/local.mk (stumpwm-fix-broken-read-one-line.patch): Remove obsolete. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Brett Gilio <brettg@posteo.net> Evan Straw
2019-12-09gnu: ruby-safe-yaml: Update to 1.0.5....* gnu/packages/ruby.scm(ruby-save-yaml): Update to 1.0.5. * gnu/packages/patches/ruby-safe-yaml-add-require-time.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Björn Höfling
2019-12-08gnu: glusterfs: Update to 7.0...* gnu/packages/file-systems.scm (glusterfs): Update to 7.0. [source]: Update URL. [arguments]: Add "PYTHON=" and"--enable-cmocka" configure flags. Remove 'replace-config.sub and 'fix-lex phases. Add 'autogen. [native-inputs]: Add libtirpc, rpcsvc-proto, autoconf, automake, and libtool. [inputs]: Add fuse, libaio, and rdma-core. Remove lvm2 and sqlite. * gnu/packages/patches/glusterfs-use-PATH-instead-of-hardcodes.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Andrew Miloradovsky
2019-12-07gnu: python-pyatspi: Update to 2.32.1....* gnu/packages/gnome.scm (python-pyatspi): Update to 2.32.1. [source]: Remove patch. * gnu/packages/patches/python-pyatspi-python-37.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Kei Kebreau
2019-12-07gnu: totem: Update to 3.32.1....* gnu/packages/gnome.scm (totem): Update to 3.32.1. [source]: Remove patches. [arguments]: Add 'pre-check' phase. Remove #:parallel-build?. [native-inputs]: Add python-pylint and xorg-server-for-tests. [inputs]: Replace python2-pygobject with python-pygobject. * gnu/packages/patches/totem-meson-easy-codec.patch, gnu/packages/patches/totem-meson-compat.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Kei Kebreau
2019-12-07gnu: gnome-control-center: Update to 3.32.2....* gnu/packages/gnome.scm (gnome-control-center): Update to 3.32.2. [source]: Remove patch. [arguments]: Adjust 'patch-paths' phase accordingly. [native-inputs]: Add hicolor-icon-theme, python-dbusmock and xorg-server-for-tests. [inputs]: Add gnome-session and gsound. * gnu/packages/patches/gnome-control-center-udisks.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Kei Kebreau
2019-12-07gnu: mes: Add patch to remove store name from binary....* gnu/packages/patches/mes-remove-store-name.patch: New file, from upstream. * gnu/packages/mes.scm (mes): Use it. Add `www.' to homepage. * gnu/local.mk (dist_patch_DATA): Add it. Jan Nieuwenhuizen
2019-12-06gnu: Add ncompress....* gnu/packages/compression.scm (ncompress): New variable. * gnu/packages/patches/compress-fix-softlinks.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Jan Nieuwenhuizen
2019-12-05gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and stum......* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp. Pierre Neidhardt
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascrip......This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’. Tobias Geerinckx-Rice
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and st......* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp. Pierre Neidhardt
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201....* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field. Marius Bakke
2019-12-04gnu: feh: Update to 3.3....* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (feh): Update to 3.3. [source](patches): Remove. Marius Bakke
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008, CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012. * gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update hash for the firefox source tarball. Update to the latest from gnuzilla.git. Don't apply icecat-gnuzilla-fixes.patch. Remove determinism fix in makeicecat that is now upstream. Tweak a status message. (icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag. * gnu/packages/patches/icecat-makeicecat.patch: Adapt. Mark H Weaver
2019-12-03gnu: handbrake: Upgrade to 1.3.0....* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove patch. [native-inputs]: Remove cmake and curl. [inputs]: Add dav1d and numactl. [arguments]: Add "--disable-nvenc" to configure flags in place of patch. Adjust "bootstrap" phase in response to upstream changes. Add "patch-SHELL" and "relax-reqs" phases. Eric Bavier
2019-12-03gnu: pugixml: Update to 1.10....* gnu/packages/xml.scm (pugixml): Update to 1.10. [source]: Remove obsolete patch. * gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2019-12-02gnu: python-scikit-image: Move to (gnu packages python-science)....* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image): Move these two from here... * gnu/packages/python-science.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2019-12-01gnu: thermald: Update to 1.9....* gnu/packages/admin.scm (thermald): Update to 1.9. [source]: Remove patch. * packages/patches/thermald-make-int-max32-visible.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2019-12-01gnu: fcgi: Update to 2.4.2....* gnu/packages/web.scm (fcgi): Update to 2.4.2. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove obsolete patches. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch, gnu/packages/patches/fcgi-2.4.0-poll.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice
2019-11-30gnu: retroarch: Disable the on-line updater....Addresses <http://issues.guix.gnu.org/issue/38360>. * gnu/packages/emulators.scm (retroarch)[source]: Add patch and snippet. * packages/patches/retroarch-disable-online-updater.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2019-11-30gnu: ocaml-piqilib: Update to 0.6.15....* gnu/packages/ocaml.scm (ocaml-piqilib): Update to 0.6.15. [source]: Remove patch. [native-inputs]: Remove camlp4. [propagated-inputs]: Replace ulex with sedlex. * gnu/packages/patches/ocaml-piqilib-Update-base64.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Julien Lepiller
2019-11-29gnu: openmpi: Increase priority of the PSM component....* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to... * gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk to change the priority of PSM. * gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise. Ludovic Courtès
2019-11-29gnu: xinetd: Update to 2.3.15.4 [fix build]....* gnu/packages/web.scm (xinetd): Update to 2.3.15.4. [source]: Switch to openSUSE (and Debian) maintenance fork. Remove obsolete patches. [native-inputs]: Add automake, autoconf, libtool, and pkg-config. [home-page]: Update. * gnu/packages/patches/xinetd-CVE-2013-4342.patch, gnu/packages/patches/xinetd-fix-fd-leak.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice
2019-11-28Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stu......This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull". Ricardo Wurmus
2019-11-28gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm....* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. Pierre Neidhardt
2019-11-28gnu: psm: Disable memory statistics code....* gnu/packages/patches/psm-disable-memory-stats.patch: New file. * gnu/packages/linux.scm (psm)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28services: Add pam-mount....* gnu/services/pam-mount.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (PAM Mount Service): New subsection. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28gnu: feh: Adapt tests for imlib2 1.6....* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file. * gnu/packages/image-viewers.scm (feh)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Pierre Langlois
2019-11-26gnu: Add pam-mount....* gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-11-22gnu: xsane: Fix snprintf buffer length....* gnu/packages/scanner.scm (xsane)[source]: Add patch. * gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2019-11-22gnu: Register xsane patches....This follows up on commit a608666d74f156819cecfabaf72290726d7964e6. * gnu/local.mk (dist_patch_DATA): Add missing patches. Tobias Geerinckx-Rice
2019-11-22gnu: libseccomp: Fix build on AArch64....This is a followup to d100d5d5449eabd65e9c26081b7620a3d342c9eb. * gnu/packages/patches/libseccomp-open-aarch64.patch: New file. * gnu/packages/linux.scm (libseccomp)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-21gnu: hexchat: Fix crash on exit....* gnu/packages/patches/hexchat-crash-exit.patch: New file. * gnu/packages/hexchat.scm (orgin): Add patch. * gnu/local.mk (dist_patch_DATA): Add it. Julien Lepiller
2019-11-20gnu: ghc-haddock-api: Update to 2.22.0....* gnu/packages/patches/ghc-haddock-api-fix-haddock.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-haddock-api): Update to 2.22.0. [source]: Use the new patch. [arguments]: Change the 'update-constraints' phase to allow newer versions of 'QuickCheck' and 'hspec'. Timothy Sample
2019-11-20gnu: elm-compiler: Fix Cabal dependency constraints....This package used a patch to update the Cabal version constraints for 'language-glsl'. This is now done in a phase for consistency with other Haskell packages. * gnu/packages/elm.scm (elm-compiler): Add a phase that updates the Cabal file to allow for newer versions of 'ansi-terminal', 'containers', 'http-client', 'language-glsl', and 'network'. [source]: Remove 'elm-compiler-relax-glsl-bound.patch'. * gnu/packages/patches/elm-compiler-relax-glsl-bound.patch: Delete file. * gnu/local.mk: Remove it. Timothy Sample
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