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2022-06-14gnu: TimescaleDB: Update to 2.7.0.Marius Bakke
* gnu/packages/databases.scm (timescaledb): Update to 2.7.0. [source](snippet): Remove more files. [source](patches): New field. * gnu/packages/patches/timescaledb-flaky-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-13gnu: java-commons-lang3: Update to 3.12.0Artyom V. Poptsov
* gnu/packages/java.scm (java-commons-lang3): Update to 3.12.0. * gnu/packages/patches/java-commons-lang-fix-dependency.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2022-06-13gnu: fplll: Update to 5.4.2.Andreas Enge
* gnu/packages/algebra.scm (fplll): Update to 5.4.2. [source]: Remove patch; for unknown reasons the package now compiles without it. * gnu/packages/patches/fplll-std-fenv.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Unregister patch.
2022-06-13gnu: Add js-mathjax-for-r-mathjaxr.Ricardo Wurmus
* gnu/packages/patches/mathjax-3.1.2-no-a11y.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/javascript.scm (js-mathjax-for-r-mathjaxr): New variable.
2022-06-12Merge branch 'master' into stagingLudovic Courtès
2022-06-08Merge branch 'master' into stagingLudovic Courtès
2022-06-07gnu: Remove unused patch.Efraim Flashner
* gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-07gnu: python-flake8-polyfill: Fix building with python-flake8@4.Efraim Flashner
* gnu/packages/python-xyz.scm (python-flake8-polyfill)[source]: Add patch. * gnu/packages/patches/python-flake8-polyfill-flake8-4-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-06-10services: jami: Modernize to adjust to Shepherd 0.9+ changes.Maxim Cournoyer
This partially fixes <https://issues.guix.gnu.org/54786>, allowing the 'jami' and 'jami-provisioning' system tests to pass again. In version 0.9.0, Shepherd constructors are now run concurrently, via cooperative scheduling (Guile Fibers). The Jami service previously relied on blocking sleeps while polling for D-Bus services to become ready after forking a process; this wouldn't work anymore since while blocking the service process wouldn't be given the chance to finish starting. The new reliance on Fibers in Shepherd's fork+exec-command in the helper 'send-dbus' procedure also meant that it wouldn't work outside of Shepherd anymore. Finally, the 'start-service' Shepherd procedure used in the test suite would cause the Jami daemon to be spawned multiple times (a bug introduced in Shepherd 0.9.0). To fix/simplify these problems, this change does the following: 1. Use the Guile AC/D-Bus library for D-Bus communication, which simplify things, such as avoiding the need to fork 'dbus-send' processes. 2. The non-blocking 'sleep' version of Fiber is used for the 'with-retries' waiting syntax. 3. A 'dbus' package variant is used to adjust the session bus configuration, tailoring it for the use case at hand. 4. Avoid start-service in the tests, preferring 'jami-service-available?' for now. * gnu/build/jami-service.scm (parse-dbus-reply, strip-quotes) (deserialize-item, serialize-boolean, dbus-dict->alist) (dbus-array->list, parse-account-ids, parse-account-details) (parse-contacts): Delete procedures. (%send-dbus-binary, %send-dbus-bus, %send-dbus-user, %send-dbus-group) (%send-dbus-debug): Delete parameters. (jami-service-running?): New procedure. (send-dbus/configuration-manager): Rename to... (call-configuration-manager-method): ... this. Turn METHOD into a positional argument. Turn ARGUMENTS into an optional argument. Invoke `call-dbus-method' instead of `send-dbus', adjusting callers accordingly. (get-account-ids, id->account-details, id->account-details) (id->volatile-account-details, username->id, add-account remove-account) (username->contacts, remove-contact, add-contact, set-account-details) (set-all-moderators, username->all-moderators?, username->moderators) (set-moderator): Adjust accordingly. (with-retries, send-dbus, dbus-available-services) (dbus-service-available?): Move to ... * gnu/build/dbus-service.scm: ... this new module. (send-dbus): Rewrite to use the Guile AC/D-Bus library. (%dbus-query-timeout, sleep*): New variables. (%current-dbus-connection): New parameter. (initialize-dbus-connection!, argument->signature-type) (call-dbus-method): New procedures. (dbus-available-services): Adjust accordingly. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new module. * gnu/packages/glib.scm (dbus-for-jami): New variable. * gnu/services/telephony.scm: (jami-configuration)[dbus]: Default to dbus-for-jami. (jami-dbus-session-activation): Write a D-Bus daemon configuration file at '/var/run/jami/session-local.conf'. (jami-shepherd-services): Add the closure of guile-ac-d-bus and guile-fibers as extensions. Adjust imported modules. Remove no longer used parameters. <jami-dbus-session>: Use a PID file, avoiding the need for the manual synchronization. <jami>: Set DBUS_SESSION_BUS_ADDRESS environment variable. Poll using 'jami-service-available?' instead of 'dbus-service-available?'. * gnu/tests/telephony.scm (run-jami-test): Add needed Guile extensions. Set DBUS_SESSION_BUS_ADDRESS environment variable. Adjust all tests to use 'jami-service-available?' to determine if the service is started rather than the now problematic Shepherd's 'start-service'.
2022-06-05gnu: ncftp: Build reproducibly.Vagrant Cascadian
* gnu/packages/patches/ncftp-reproducible.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/ftp.scm (ncftp): Add patch.
2022-06-05gnu: alpine: Update to 2.26.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (alpine): Update to 2.26. [source]: Remove patch. * gnu/packages/patches/alpine-fix-privacy-policy-crash.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-08gnu: epiphany: Update to 42.2.Liliana Marie Prikler
* gnu/packages/gnome.scm (epiphany): Update to 42.2. [source]: Remove patches. * gnu/packages/patches/epiphany-update-libportal-usage.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-06-05gnu: sudo: Update to 1.9.11p1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sudo): Update to 1.9.11p1. [source]: Remove patch again. * gnu/packages/patches/sudo-missing-sudo_pt_regs-aarch64.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-05gnu: nftables: Update to 1.0.4.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (nftables): Update to 1.0.4. [source]: Remove patch. * gnu/packages/patches/nftables-fix-makefile.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-05gnu: sudo: Fix build on aarch64.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (sudo)[source]: Add patch. * gnu/packages/patches/sudo-missing-sudo_pt_regs-aarch64.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2022-06-01Merge remote-tracking branch 'origin/master' into stagingEfraim Flashner
2022-05-31gnu: openbox: Patch for Python 3.Maxim Cournoyer
* gnu/packages/patches/openbox-python3.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/openbox.scm (openbox)[source]: Apply it. [arguments]: New field. [propagated-inputs]: Replace python2-pyxdg with python-pyxdg. [native-inputs]: Replace python-2 with python-wrapper. Add autoconf, automake, gettext-minimal and libtool.
2022-05-31gnu: Remove 4store.Maxim Cournoyer
* gnu/packages/databases.scm (4store): Delete variable. * gnu/packages/patches/4store-fix-buildsystem.patch: Delete file. * gnu/packages/patches/4store-unset-preprocessor-directive.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them.
2022-05-31gnu: mozjs: Cleanup to only keep the last version.Maxim Cournoyer
* gnu/packages/gnuzilla.scm (mozjs): Preserve only the metadata and otherwise update fields to use those of mozjs-78. [arguments]: Use gexps. [phases]: Delete trailing #t. [native-inputs]: Use new style. (mozjs-38, mozjs-52, mozjs-60, mozjs-78): Delete variables. * gnu/packages/patches/mozjs17-aarch64-support.patch * gnu/packages/patches/mozjs24-aarch64-support.patch * gnu/packages/patches/mozjs38-pkg-config-version.patch * gnu/packages/patches/mozjs38-shell-version.patch * gnu/packages/patches/mozjs38-tracelogger.patch * gnu/packages/patches/mozjs38-version-detection.patch * gnu/packages/patches/mozjs60-riscv64-support.patch: Delete patches. * gnu/local.mk (dist_patch_DATA): De-register them. * gnu/packages/games.scm (0ad): Adjust accordingly. * gnu/packages/gnome.scm (gjs): Likewise. * gnu/packages/polkit.scm (polkit-mozjs): Likewise.
2022-05-31gnu: mia: Update to 2.4.7.Maxim Cournoyer
* gnu/packages/patches/mia-fix-boost-headers.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image-processing.scm (mia): Update to 2.4.7. [source]: Apply patch. [configure-flags]: Use the more conventional OFF option value (instead of 0). [inputs]: Use new style. Replace python2-lxml by python-lxml. Replace vtk by vtk-7. [native-inputs]: Use new style. Replace python-2 with python-wrapper.
2022-05-31gnu: itk-snap: Fix build.Maxim Cournoyer
* gnu/packages/patches/itk-snap-alt-glibc-compat.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/image-processing.scm (itk-snap): Apply it. [phases]: Delete trailing #t. [inputs]: Use new style. Replace vtk-6 with vtk-7.
2022-05-31gnu: Add vtk-7.Maxim Cournoyer
* gnu/packages/image-processing.scm: (vtk-7): New variable. * gnu/packages/patches/vtk-7-gcc-10-compat.patch: New patch. * gnu/packages/patches/vtk-7-hdf5-compat.patch: Likewise. * gnu/packages/patches/vtk-7-python-compat.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them.
2022-05-31gnu: Remove rapicorn.Maxim Cournoyer
* gnu/packages/graphics.scm (rapicorn): Delete variable. * gnu/packages/patches/rapicorn-isnan.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: breezy: Update to 3.2.2.Maxim Cournoyer
* gnu/packages/patches/breezy-fix-gio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/version-control.scm (breezy): Update to 3.2.2. [source]{snippet}: Delete pre-generated cythonized C files. {patches}: Apply patch. [tests?]: Disable tests. [phases]{patch-test-shebangs, check}: New phase and override. [native-inputs]: Add nano, python-cython, python-docutils, and python-testrepository. [inputs]: Use new style. Add python-launchpadlib and python-pygobject. [description]: Adjust Bazaar URL.
2022-05-31gnu: Remove python2-pygobject.Maxim Cournoyer
* gnu/packages/glib.scm (python2-pygobject, python2-pygobject-2): Delete variables. (python-pygobject)[properties]: Delete field. * gnu/packages/patches/python2-pygobject-2-deprecation.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it. * gnu/packages/gnome.scm (libsecret): Remove commented Python 2 inputs.
2022-05-31gnu: Remove wicd.Maxim Cournoyer
The last release is from 2017, stuck on Python 2. * gnu/packages/wicd.scm: Delete file. * gnu/packages/patches/wicd-bitrate-none-fix.patch: Delete file. * gnu/packages/patches/wicd-get-selected-profile-fix.patch: Likewise. * gnu/packages/patches/wicd-urwid-1.3.patch: Likewise. * gnu/packages/patches/wicd-wpa2-ttls.patch: Likewise. * gnu/local.mk: De-register them. * gnu/services/networking.scm: Remove wicd service... * doc/guix.texi: ... and its documentation. * gnu/system/linux-container.scm (containerized-operating-system) <services-to-drop>: Remove wicd-service-type.
2022-05-31gnu: Remove python2-subprocess32.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python2-subprocess32): Delete variable. * gnu/packages/patches/python2-subprocess32-disable-input-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: gourmet: Update to 0.17.4-0-8af29c8 and enable tests.Maxim Cournoyer
* gnu/packages/patches/gourmet-sqlalchemy-compat.patch: Add file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/nutrition.scm (gourmet): Update to 0.17.4-0-8af29c8. [source]: Apply patch. [python]: Delete argument. [tests?]: Likewise. [phases]{prepare-x}: New phase. {check}: New phase override. {install-dekstop-file-and-icons}: New phase. [native-inputs]: Delete python2-distutils-extra, intltool and python2-pygtk. Add python-dogtail, python-pytest, python-selenium and xorg-server-for-tests. [inputs]: Delete python2-pygtk, python2-sqlalchemy, python2-lxml, python2-pillow and python2-elib.intl. Add gtk+, python-argcomplete, python-beautifulsoup4, python-gst, python-keyring, python-lxml, python-pillow, python-pycairo, python-pyenchant, python-pygobject, python-requests, python-scrape-schema-recipe, python-sqlalchemy.
2022-05-31gnu: Remove python2-parameterized.Maxim Cournoyer
* gnu/packages/check.scm (python2-parameterized): Delete variable. * gnu/packages/patches/python2-parameterized-docstring-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-05-31gnu: guile-ac-d-bus: Run test suite.Maxim Cournoyer
* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/guile-xyz.scm (guile-ac-d-bus) [source]: Apply patch. [phases]{check}: New phase. [native-inputs]: Add bash-minimal.
2022-05-31gnu: emacs-helpful: Update to 0.19yarl baudig
* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19. [source]: Use the patch. * gnu/local.mk (dist_patch_DATA): Register the patch. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-30gnu: casync: Update to 99559cd1.Greg Hogan
* gnu/packages/sync.scm (casync): Update to 99559cd1. [source]: Remove patch. [arguments]: Fix installation. [native-inputs]: Add python. [inputs]: Add eudev. * gnu/packages/patches/casync-renameat2-declaration.patch: Delete file. * gnu/local.mk: Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30gnu: GCC: Add cross environment variables patch to GCC 12.Morgan Smith
* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file. * gnu/local.mk (dist_patch_DATA): Add gcc-12-cross-environment-variables.patch. * gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-30gnu: virtuoso-ose: Register patch.Efraim Flashner
This is a follow-up to 48efbde7a944acfe4fc944bf27bfa9ff82592024. * gnu/local.mk (dist_patch_DATA): Register patch.
2022-05-29gnu: irrlicht: Update to 1.8.5.Tobias Geerinckx-Rice
* gnu/packages/games.scm (irrlicht): Update to 1.8.5. [source]: Use unmodified Debian patches rather than manually maintain a custom mash-up. [arguments]: Add a new 'delete-broken-install-rule phase instead. Don't explicitly return #t from phases. * gnu/packages/patches/irrlicht-link-against-needed-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2022-06-05gnu: minetest: Update to 5.5.1.Vivien Kraus
* gnu/local.mk (dist_patch_DATA): Remove minetest-add-MINETEST_MOD_PATH.patch. * gnu/packages/minetest.scm (minetest): Update to 5.5.1. [patches]: Don’t use the patch anymore. [#:configure-flags]: Point cmake to irrlicht-for-minetest and zstd. [inputs]: Use irrlicht-for-minetest instead of irrlicht, and add zstd. (minetest-data): Update hash. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-06-01gnu: Remove unreferenced patch.Efraim Flashner
This is a follow-up to a08c21f206d34a42d311e46b495b422188be70eb. * gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-06-01gnu: pigx-bsseq: Update to 0.1.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.1.7. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove automake and autoconf. * gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2022-06-01gnu: pigx-chipseq: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0. [source]: Remove patch. [arguments]: Remove 'autoreconf phase. [native-inputs]: Remove autoconf and automake. * gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2022-05-26Merge branch 'master' into stagingLudovic Courtès
2022-05-27gnu: emacs-deferred: Fix wrong number of arguments.Liliana Marie Prikler
* gnu/packages/patches/emacs-deferred-fix-number-of-arguments.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-deferred)[patches]: Use it here. * gnu/local.mk (dist_patch_DATA): Add it here.
2022-05-25Move (gnu platform) and (gnu platforms ...) to guix/.Josselin Poiret
* gnu/platform.scm: * gnu/platforms/arm.scm: * gnu/platforms/hurd.scm: * gnu/platforms/mips.scm: * gnu/platforms/powerpc.scm: * gnu/platforms/riscv.scm: * gnu/platforms/s390.scm: * gnu/platforms/x86.scm: Move to guix/. * Makefile.am: * doc/guix.texi (Porting to a New Platform): * etc/release-manifest.scm: * gnu/ci.scm: * gnu/image.scm: * gnu/local.mk: * gnu/packages/bioinformatics.scm: * gnu/packages/bootstrap.scm: * gnu/packages/cross-base.scm: * gnu/packages/instrumentation.scm: * gnu/packages/linux.scm: * gnu/system/image.scm: * gnu/system/images/hurd.scm: * gnu/system/images/novena.scm: * gnu/system/images/pine64.scm: * gnu/system/images/pinebook-pro.scm: * gnu/system/images/rock64.scm: * guix/scripts/build.scm: * guix/scripts/system.scm: * guix/self.scm: Update (gnu platform...) to (guix platform...). Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-22gnu: ytnef: Update to 2.0.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (ytnef): Update to 2.0. [source]: Remove patches. * gnu/packages/patches/ytnef-CVE-2021-3403.patch, gnu/packages/patches/ytnef-CVE-2021-3404.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2022-05-24gnu: gcc@12: Add missing file.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55616>. Reported by Tim Rakowski <tim.rakowski@gmail.com>. This is a followup to 37e29ccd332f371aacedc71388e805fbc9e947fa. * gnu/packages/patches/gcc-12-strmov-store-file-names.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2022-05-24gnu: sssd: Update to 2.7.0.Timotej Lazar
Add support for renewing AD membership with adcli. Wrap binaries with LDB_MODULES_PATH. Fix the sss_analyze utility to run without systemd libraries. Add native inputs to generate man pages and run additional tests during build. * gnu/packages/sssd.scm (sssd): Update to 2.7.0. [patches]: Drop patches applied upstream. Add a patch for sss_analyze. [inputs]: Add adcli, bash-minimal, jose, keyutils, libnl, pcre2, python. Drop augeas, pcre. [native-inputs]: Add cmocka, doxygen, gettext-minimal, libfaketime, libtool, openssh, po4a, softhsm. [arguments]: Rewrite in gexp style. Fix configure checks. Remove static library from install. Wrap binaries to set correct paths. * gnu/packages/patches/sssd-collision-with-external-nss-symbol.patch, gnu/packages/patches/sssd-fix-samba-4.15.3.patch, gnu/packages/patches/sssd-fix-samba.patch: Delete files. * gnu/packages/patches/sssd-optional-systemd.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-22platform: Introduce new platforms.Mathieu Othacehe
* gnu/platforms/intel.scm: New file. * gnu/platforms/mips.scm: Ditto. * gnu/platforms/powerpc.scm: Ditto. * gnu/platforms/riscv.scm: Ditto. * gnu/platforms/s390.scm: Ditto. * gnu/local.mk (GNU_SYSTEM_MODULES): Add them. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-05-16Merge branch 'master' into stagingEfraim Flashner
2022-05-15gnu: emacs-yasnippet: Fix build.Liliana Marie Prikler
* gnu/packages/patches/emacs-yasnippet-fix-tests.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-yasnippet): Use it here. * gnu/local.mk (dist_patch_DATA): Register it here.
2022-05-14gnu: libxmlb: Install xb-tool in bin dir.Vagrant Cascadian
* gnu/packages/patches/libxmlb-install-xb-tool-into-bindir.patch: New file. * gnu/packages/xml.scm (libxmlb)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/diffoscope.scm (diffoscope)[arguments]: Add 'xb-tool-external-tool phase.
2022-05-22guix: Add elm-build-system.Philip McGrath
* gnu/packages/patches/elm-offline-package-registry.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/elm.scm (elm): Use it. * guix/build-system/elm.scm, guix/build/elm-build-system.scm, tests/elm.scm: New files. * Makefile.scm (MODULES, SCM_TESTS): Add them. * doc/guix.texi (Build Systems): Document 'elm-build-system'. * doc/contributing.texi (Elm Packages): New section. Document naming conventions and utilities. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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