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2021-07-12gnu: proot: Update to 5.2.0-alpha.Maxim Cournoyer
This allows proot to be built for aarch64-linux and armhf-linux. * gnu/packages/patches/proot-test-fhs.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Un-register it. * gnu/packages/linux.scm: Update to 5.2.0-alpha. [patches]: Remove field. [supported-system]: New field. [tests?]: Disable for ARM-based systems. [phases]{fix-fhs-assumptions-in-tests, set-shell-file-name}: Combine into... {patch-sources}: ... this new phase. {build-manpage}: New phase. {check}: Add seccomp issue URL in comment. [native-inputs]: Add coreutils issue URL in comment. Add pkg-config and python-docutils. [inputs]: Add libarchive.
2021-07-09gnu: Add emacs-telega-server.Zhu Zihao
* gnu/packages/emacs-xyz.scm (emacs-telega-server): New variable. * gnu/packages/patches/emacs-telega-path-placeholder.patch: New file. * gnu/package/patches/emacs-telega-patch-server-functions.patch: Remove stale patch. * gnu/local.mk (dist_patch_DATA): Update accordingly. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-07-09gnu: python-seaborn: Update to 0.11.1.Ludovic Courtès
* gnu/packages/patches/python-seaborn-kde-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-seaborn): Use it, and update to 0.11.1.
2021-07-07gnu: VTK 8: Re-fix a build failure with recent versions of freetype.Leo Famulari
* gnu/packages/patches/vtk-8-fix-freetypetools-build-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/image-processing.scm (vtk-8): Dis-inherit from VTK. Use the package definition that predated the update to VTK 9, taken from commit f4dc8ac6dfa036d98aa0990ae22268a9650899d0.
2021-07-06gnu: Add ytfzf.Raghav Gururajan
* gnu/packages/image-viewers.scm (ytfzf): New variable. Co-authored-by: jgart <jgart@dismail.de>
2021-07-04gnu: libgrss: Fix CVE-2016-20011.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libgrss): Add patch. * gnu/packages/patches/libgrss-CVE-2016-2001.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-06-30gnu: tor: Update to 0.4.6.6.Efraim Flashner
* gnu/packages/tor.scm (tor): Update to 0.4.6.6. [source]: Remove patch. * gnu/packages/patches/tor-fix-build-with-gcc-7.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-28Revert "gnu: Add ytfzf."Raghav Gururajan
This reverts commit 3fdb2d679259f5d1541240dd4e9cedda17040bf2, as it was accidentally pushed.
2021-06-28gnu: Add ytfzf.LibreMiami
* gnu/packages/image-viewers.scm (ytfzf): New variable. Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name> Co-authored-by: jgart <jgart@dismail.de>
2021-06-28gnu: Add go-1.16.Sarah Morgensen
Add go@1.16 as a non-default go. Changes from 1.14: Use now-supported GO_LDSO configuration option for setting the interpreter. Bootstrap with gccgo on platforms which do not support go-1.4. Fix and re-enable cmd/go script tests. Fix typo in cgoldflags patch. Break out tests into "check" phase. Remove references to perl to reduce closure size by ~10%. Set GOCACHE so go doesn't attempt to access $HOME. * gnu/packages/patches/go-fix-script-tests.patch: New file. * local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-1.16): New variable. Use the patch. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-28gnu: Add oneko.Timotej Lazar
* gnu/packages/toys.scm (oneko): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-06-25gnu: connman: Update to 1.40.Tobias Geerinckx-Rice
* gnu/packages/connman.scm (connman): Update to 1.40. [source]: Remove upstreamed patch. [inputs]: Add lz4, rather than propagate it from openconnect. * gnu/packages/patches/connman-CVE-2021-33833.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-24gnu: Add cl-nst.Sharlatan Hellseher
Initiate new lisp-check module the same way as other language specific ones (python-check, haskell-check). * gnu/local.mk (GNU_SYSTEM_MODULES): Add lisp-check.scm. * gnu/packages/lisp-check.scm (sbcl-nst, ecl-nst, cl-nst): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-23gnu: cups: Add replacement to fix CVE-2020-10001.Tobias Geerinckx-Rice
* gnu/packages/patches/cups-CVE-2020-10001.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cups.scm (cups-minimal/fixed): New variable. (cups-minimal)[replacement]: Assign it to new field.
2021-06-21gnu: Add tlf.Jack Hill
* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file. * gnu/local.mk: Add it. * gnu/packages/radio.scm (tlf): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-20gnu: linkchecker: Update to 10.0.1.Arun Isaac
* gnu/packages/web.scm (linkchecker): Update to 10.0.1. [source]: Remove patches. [inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16, python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and python-requests respectively. [native-inputs]: Replace python2-pytest, python2-miniboa and python2-parameterized with python-pytest, python-miniboa and python-parameterized respectively. [arguments]: Use python 3. Replace check phase instead of deleting the standard phase and adding a custom one. Use add-installed-pythonpath instead of setting PYTHONPATH directly. Support disabling of tests with tests?. [home-page]: Update URI. * gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2021-06-19gnu: Remove bsdiff traces.Marius Bakke
This is a follow-up to 373c7b5791acd8f377455be47260948b843dd5db. * gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-06-19gnu: efivar: Adjust for GCC 10.Marius Bakke
* gnu/packages/patches/efivar-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New fields. [arguments]: Use CC-FOR-TARGET while at it.
2021-06-19gnu: jfsutils: Adjust for GCC 10.Marius Bakke
* gnu/packages/patches/jfsutils-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it.
2021-06-19gnu: isc-dhcp: Adjust for GCC 10.Marius Bakke
* gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (isc-dhcp)[source](patches): New field.
2021-06-19gnu: ath9k-htc-firmware: Adjust for GCC 10.Marius Bakke
* gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it.
2021-06-19gnu: QEMU: Adjust for Sphinx 4.0.Marius Bakke
* gnu/packages/patches/qemu-sphinx-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-18gnu: curl@7.77.0: Provide a correct TLS priority string.Ludovic Courtès
Fixes <https://bugs.gnu.org/49035>. * gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/curl.scm (curl-7.77.0)[source]: Use it.
2021-06-18gnu: inkscape: Update to version 1.1.Boris A. Dekshteyn
* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1. * gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-17gnu: brightnessctl: Add elogind support.Brice Waegeneire
* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (brightnessctl)[source]: Apply it. [make-flags]: Enable logind support. [native-inputs]: Add pkg-config. [inputs]: Add elogind.
2021-06-16gnu: HexChat: Add Libera Chat to the list of networks.Leo Famulari
* gnu/packages/patches/hexchat-add-libera-chat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (hexchat)[source]: Use it.
2021-06-16gnu: Add rust-ndarray-0.13.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable. (rust-ndarray-0.12): Inherit from above. * gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file. * gnu/local.mk: Register new file.
2021-06-14gnu: tor: Update to 0.4.6.5.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.4.6.5. [source]: Add a patch to fix building with GCC 7. * gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-06-14gnu: gcc-8: Make static libs reproducibleCarl Dong
This fixes the nonreproducibility in gcc documented here: https://reproducible-builds.org/docs/archives/#gnu-libtool * gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-8)[source]: Apply it.
2021-06-14gnu: Add irods.Ricardo Wurmus
* gnu/packages/irods.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2021-06-14gnu: nettle-3.5: Add replacement to fix CVE-2021-3580 et al.Mark H Weaver
* gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/nettle.scm (nettle)[replacement]: New field. (nettle-3.5/fixed): New variable.
2021-06-13gnu: connman: Fix CVE-2021-33833.Leo Famulari
* gnu/packages/patches/connman-CVE-2021-33833.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/connman.scm (connman)[source]: Use it.
2021-06-13gnu: QEMU: Fix compatibility with Meson 0.58.Marius Bakke
* gnu/packages/patches/qemu-meson-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it.
2021-06-13gnu: libcacard: Update to 2.8.0.Marius Bakke
* gnu/packages/patches/libcacard-unknown-variable.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/spice.scm (libcacard): Update to 2.8.0. [source](patches): New field. [arguments]: Remove trailing #t.
2021-06-12gnu: grub: Update to 2.06.Tobias Geerinckx-Rice
[source]: Remove upstreamed patches. * gnu/packages/patches/grub-setup-root.patch: Update patch. * gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch, gnu/packages/patches/grub-cross-system-i686.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2021-06-08gnu: polkit: Add replacement for CVE-2021-3560.Ludovic Courtès
* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit/fixed): New variable. (polkit)[replacement]: New field.
2021-06-07gnu: xpra: Update to 4.2.Lars-Dominik Braun
Fixes <https://issues.guix.gnu.org/issue/48890>. * gnu/packages/xorg.scm (xpra): Update to 4.2. [source]: Switch to ".tar.gz" archive and update patch file. [native-inputs]: Add pandoc. [arguments]: Adjust custom 'fix-paths phase for changes in source. * gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version and rename file. * gnu/local.mk (dist_patch_DATA): Rename file. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-06-06gnu: freebayes: Update to 1.3.5.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5. [source]: Remove patch. [arguments]: Adjust custom 'patch-source phase for changes in source. [inputs]: Remove zlib. * gnu/packages/patches/freebayes-devendor-deps.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05gnu: wgetpaste: Update to 2.32.Tobias Geerinckx-Rice
* gnu/packages/wget.scm (wgetpaste): Update to 2.32. [source]: Remove patch. * gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibilityCarl Dong
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-03gnu: amule: Update to 2.3.3.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (amule): Update to 2.3.3. [source]: Remove patch. * gnu/packages/patches/amule-crypto-6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-30gnu: julia-jllwrappers: Move to (gnu packages julia-jll).Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ... * gnu/packages/julia-jll.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
2021-05-29gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm.Arun Isaac
This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and gnu/tests/ci.scm.
2021-05-29gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-27gnu: lksctp-tools: Update to 1.0.19.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-26gnu: minimap2: Update to 2.18.Efraim Flashner
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-25gnu: Remove unnecessary patches for emacs-geiser.Alexandr Vityazev
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: * gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Apply file removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-22gnu: autotrace: Prepare for GLib 2.68 and later.Marius Bakke
* gnu/packages/patches/autotrace-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (autotrace)[source](patches): New field.
2021-05-22gnu: libblockdev: Prepare for GLib 2.58.Marius Bakke
* gnu/packages/patches/libblockdev-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/disk.scm (libblockdev)[source](patches): New field.
2021-05-22gnu: ucx: Restore (and adapt) ioctl fallback patch.Marius Bakke
This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which removed the patch, but it was still necessary for some dependents. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
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