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2021-06-08gnu: polkit: Add replacement for CVE-2021-3560.Ludovic Courtès
* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit/fixed): New variable. (polkit)[replacement]: New field.
2021-06-07gnu: xpra: Update to 4.2.Lars-Dominik Braun
Fixes <https://issues.guix.gnu.org/issue/48890>. * gnu/packages/xorg.scm (xpra): Update to 4.2. [source]: Switch to ".tar.gz" archive and update patch file. [native-inputs]: Add pandoc. [arguments]: Adjust custom 'fix-paths phase for changes in source. * gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version and rename file. * gnu/local.mk (dist_patch_DATA): Rename file. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-06-06gnu: freebayes: Update to 1.3.5.Efraim Flashner
* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5. [source]: Remove patch. [arguments]: Adjust custom 'patch-source phase for changes in source. [inputs]: Remove zlib. * gnu/packages/patches/freebayes-devendor-deps.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05gnu: wgetpaste: Update to 2.32.Tobias Geerinckx-Rice
* gnu/packages/wget.scm (wgetpaste): Update to 2.32. [source]: Remove patch. * gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-06-05gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibilityCarl Dong
* gnu/packages/patches/nsis-source-date-epoch.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/installers.scm (make-nsis)[source]: Apply it.
2021-06-03gnu: amule: Update to 2.3.3.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (amule): Update to 2.3.3. [source]: Remove patch. * gnu/packages/patches/amule-crypto-6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-30gnu: julia-jllwrappers: Move to (gnu packages julia-jll).Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ... * gnu/packages/julia-jll.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
2021-05-29gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm.Arun Isaac
This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and gnu/tests/ci.scm.
2021-05-29gnu: Add mosaicatcher.Ricardo Wurmus
* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
2021-05-27gnu: lksctp-tools: Update to 1.0.19.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-26gnu: minimap2: Update to 2.18.Efraim Flashner
* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-25gnu: Remove unnecessary patches for emacs-geiser.Alexandr Vityazev
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: * gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Apply file removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-05-22gnu: autotrace: Prepare for GLib 2.68 and later.Marius Bakke
* gnu/packages/patches/autotrace-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (autotrace)[source](patches): New field.
2021-05-22gnu: libblockdev: Prepare for GLib 2.58.Marius Bakke
* gnu/packages/patches/libblockdev-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/disk.scm (libblockdev)[source](patches): New field.
2021-05-22gnu: ucx: Restore (and adapt) ioctl fallback patch.Marius Bakke
This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which removed the patch, but it was still necessary for some dependents. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
2021-05-21gnu: pinball: Update to 3.1.20201218.Eric Bavier
* gnu/packages/games.scm (pinball): Update to 3.1.20201218. [source]: Tarballs no longer published on sourceforge, so use git-fetch. [native-inputs]: New field for bootstrapping inputs. [inputs]: Add libltdl. [arguments]: Add custom 'bootstrap' phase. * gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches. * gnu/local.mk (dist_patch_DATA): Remove them.
2021-05-18gnu: Add libxml2-xpath0.David Larsson
* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file... * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xml.scm (libxml2-xpath0): New variable. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-05-18gnu: ucx: Update to 1.9.0.Marius Bakke
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx): Update to 1.9.0. [source](patches): Remove.
2021-05-18gnu: rxvt-unicode: Update to 9.26.Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26. [source]: Remove upstreamed patch. * gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-17gnu: disarchive: Fix build when cross-compiling.Maxim Cournoyer
This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix for i586-pc-gnu (Hurd). * gnu/packages/patches/disarchive-cross-compilation.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/backup.scm (disarchive)[source]: Apply it. [phases]{delete-configure}: New phase. [native-inputs]: Add guile-3.0 and guile-gcrypt.
2021-05-16gnu: mercurial: Patch to make it read HGEXTENSIONPATH.Xinglu Chen
This will make Mercurial be able to find third-party extensions installed with Guix, without having to set PYTHONPATH. * gnu/packages/patches/mercurial-hg-extension-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch. * gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the patch. [native-search-paths]: Add HGEXTENSIONPATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-15gnu: Graphviz: Fix CVE-2020-18032.Leo Famulari
* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/graphviz.scm (graphviz)[replacement]: New field. (graphviz/fixed): New variable.
2021-05-13gnu: hplip: Update to 3.21.4.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (hplip): Update to 3.21.4. [source]: Remove fussy patch. Replace it with an short snippet substitution and... [arguments]: ...the new "--disable-imageProcessor-build" configure flag. * gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-13gnu: snappy: Update to 1.1.9.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (snappy): Update to 1.1.9. [source]: Add another patch. [arguments]: Add new #:configure-flags and an 'unpack-third_party-subprojects phase. [native-inputs]: Add the sources for benchmark and googletests. * gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-05-11gnu: Add giara.Raghav Gururajan
* gnu/packages/syndication.scm (giara): New variable. * gnu/packages/patches/giara-fix-login.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-05-09gnu: ExifTool: Fix CVE-2021-22204Leo Famulari
* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
2021-05-05gnu: Add tla2tools.Mike Gerwitz
This introduces tla2tools.jar, which contains the TLA+ model checker and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX typesetting system; PlusCal translator; and more. I have added five wrapper scripts for convenience, rather than invoking `java' manually. The wrapper scripts are not comprehensive; users who are familiar with tla2tools.jar, or have read the book Specifying Systems, may still invoke the commands in the traditional way. The minimum JDK version is 11. I chose to stick with that rather than bumping it to 14 (which is the largest version currently in Guix) because each OpenJDK version in Guix depends on the version before it, and so it needlessly results in many 100s of MiB of unnecessary dependencies. Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used with TLA+. * gnu/packages/java.scm (tla2tools): New variable. * gnu/packages/patches/tla2tools-build-xml.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05gnu: racket: Remove obsolete patch.Philip McGrath
* gnu/packages/racket.scm (racket)[source](patches): Remove "racket-store-checksum-override.patch", which is no longer needed since we stopped injecting store paths into Racket files in commit 834aa48: see <https://issues.guix.gnu.org/47180>. * gnu/packages/patches/racket-store-checksum-override.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-05gnu: racket: Move to (gnu packages racket).Philip McGrath
* gnu/packages/scheme.scm (racket,racket-minimal): Move to ... * gnu/packages/racket.scm: ... this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/racket.scm (racket)[synopsis]: Tweak. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-04gnu: busybox: Update to 1.33.1.Tobias Geerinckx-Rice
* gnu/packages/busybox.scm (busybox): Update to 1.33.1. [source]: Remove upstreamed patch. * gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-01gnu: u-boot: Patch to fix boot regressions for some platforms.Vagrant Cascadian
The previous workaround stopped the preboot phase from loading USB support, which makes it impossible to use a USB keyboard to select a generation from the boot menu without using a serial console. * gnu/packages/patches/u-boot-rockchip-inno-usb.patch: New File. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/bootloaders.scm (%u-boot-rockchip-inno-usb-patch): New variable. (u-boot)[source]: Add patch. (u-boot-rockpro64-rk3399, u-boot-pinebook-pro-rk3399): Remove obsolete phase.
2021-05-01gnu: Add emacs-geiser-guile.Morgan Smith
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/emacs-xyz.scm (emacs-geiser-guile): New variable. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-05-01gnu: emacs-geiser: Update to 0.13.Morgan Smith
* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it here. * gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.13. [source]: Change upstream URL. [build-system]: Change to emacs-build-system. [arguments]: Adjust accordingly. [native-inputs]: Remove emacs, autoconf, and automake. [description]: State that other packages are needed for geiser to be useful. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-28gnu: linux-libre-arm64-generic: Add eDP panel, battery and audioVagrant Cascadian
support for Pinebook Pro. * gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro lcd patch. (linux-libre-arm64-generic): Enable audio and battery modules for Pinebook Pro. * gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add patch.
2021-04-28gnu: ungoogled-chromium: Update to 90.0.4430.93.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-system-nspr.patch, gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90. (debian-patch): Make REVISION optional, default to %DEBIAN-REVISION. (%chromium-version): New variable. (%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907. (%debian-revision): Set to debian/90.0.4430.85-1. (%debian-patches): Add more patches; update hashes. (%ungoogled-origin): Update hash. (%guix-patches): Remove obsolete patches. (libvpx/chromium): Update to 1.9.0-147-g61edec1ef. (ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last component of %UNGOOGLED-REVISION, a 'git describe --long' style ID. [arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg substitution in #:phases.
2021-04-28gnu: LLVM, Clang: Add 12.0.0.Marius Bakke
* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12, clang-toolchain-12): New variables. (llvm-11): Inherit from LLVM-12.
2021-04-27gnu: gst-plugins-ugly: Fix some out-of-bounds reads.Leo Famulari
* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-ugly)[source]: Use it.
2021-04-27gnu: gst-plugins-base: Fix an invalid read when parsing ID3v2 tags.Leo Famulari
* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
2021-04-27gnu: gst-plugins-bad: Fix an overflow when processing video files.Leo Famulari
* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-plugins-bad)[source]: Use it.
2021-04-27gnu: gst-libav: Fix a stack corruption bug.Leo Famulari
* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gstreamer.scm (gst-libav)[source]: Use it.
2021-04-27gnu: gst-plugins-good: Fix CVE-2021-3497 and CVE-2021-3498.Leo Famulari
* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch, gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use them.
2021-04-27gnu: GIMP: Update to 2.10.24.Leo Famulari
* gnu/packages/gimp.scm (gimp): Update to 2.10.24. [source]: Remove obsolete patch 'gimp-make-gegl-introspect-optional.patch'. * gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-04-25gnu: Add python-orange-canvas-core.Vinicius Monego
* gnu/packages/orange.scm: New file. * gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-12gnu: racket: Don't inject store paths into Racket files.Philip McGrath
Apparently, during grafting, Guix can somehow mangle compiled Racket CS files (.zo) such that Racket will refuse to load them. (Maybe it has something to do with compression?) So, we stop patching Racket sources with absolute paths to store files (i.e. for foreign libraries to dlopen). Instead, we put them in a data file that doesn't get compiled or, in one case, embed it in C. Fixes https://issues.guix.gnu.org/47064 * gnu/packages/patches/racket-sh-via-rktio.patch: New file. Adds a special case at the C level, controlled by a preprocessor macro, to handle attempts to execute "/bin/sh". * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scheme.scm (racket)[source](patches): Apply it. (racket)[arguments](#:configure-flags): Add the CPP flag to enable it. (racket)[arguments](#:modules): Use srfi-1. (racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure. Change 'pre-configure-minimal to just change directory. Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install to configure Racket's "lib-search-dirs". (racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input. (racket-minimal)[source]: Adjust to inherit patches from racket. (racket-minimal)[arguments]: Inherit from racket: changes no longer needed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-11gnu: lksctp-tools: Fix build of include file.Hartmut Goebel
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: New file. * gnu/local.mk[patches]: Add it. * gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch.
2021-04-09gnu: python-pyqt: Fix build for new python-sip.Brendan Tildesley
* gnu/packages/qt.scm (python-pyqt) [source]: Remove pyqt-public-sip.patch. [propagated-inputs]: Add python-pyqt5-sip. * gnu/packages/patches/pyqt-public-sip.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-04-05gnu: libvirt: Update to 7.2.0.Brice Waegeneire
* gnu/packages/virtualization.scm (libvirt): Update to 7.2.0. [arguemnts]: Switch to meson, only build system supported by upstream. [inputs]: Add libssh2 and readline. [native-inputs]: Add bash-completion, gettext, python-docutils and rpcsvc-proto. * gnu/packages/patches/libvirt-add-install-prefix.patch: New file... * gnu/local.mk: ...add it. * gnu/packages/patches/libvirt-create-machine-cgroup.patch: Delete file, merged by upstream. Tested-by: Pierre Langlois <pierre.langlois@gmx.com>
2021-04-05gnu: chez-scheme: simplify packagingPhilip McGrath
Take advantage of patches that have been accepted upstream. These changes lay a foundation for reusing more of Chez's build process for Racket. * gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/chez.scm (chez-scheme)[source](patches): Use it. [source](snippet): Remove bundled libraries here, not in configure phase. [inputs]: Organize. Move "nanopass", "stex", and "xorg-rgb" to ... [native-inputs]: ... this field. [arguments]: Add (ice-9 ftw) to #:modules. Remove unneeded 'patch-processor-detection' phase. Add 'unpack-nanopass+stex' phase (refactored from 'configure'). Simplify 'configure' phase by removing patches that have been upstreamed. Add "--nogzip-man-pages" flag so we can remove 'make-manpages-writable' phase. Stop ignoring #:configure-flags, move "--threads" there, and remove unneeded workaround. Add 'prepare-stex' phase (refactored from 'install-doc'). Use it to streamline 'install-doc' phase, installing all of the right files into the right places. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-04-02gnu: runc: Update to 1.0.0-rc93.Maxim Cournoyer
* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc93. [source]: Remove the patches field. [phases]{unpack}: Remove override. {build}: Add the man target. {check}: Make conditional based on TESTS?. {install}: Add the install-man target. [native-inputs]: Add go-github-com-go-md2man. [home-page]: Update. * gnu/packages/patches/runc-CVE-2019-5736.patch: Delete file. * gnu/local.mk: Un-register it.
2021-04-02gnu: containerd: Update to 1.4.4.Maxim Cournoyer
* gnu/packages/docker.scm (containerd): Update to 1.4.4. Delete trailing #t. [arguments]: Set a MAKE-FLAGS binding. [phases]{patch-paths}: Patch the reference to 'unpigz'. {build, install}: Use the MAKE-FLAGS variable. [inputs]: Add pigz. * gnu/packages/patches/containerd-test-with-go1.13.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Un-register it.
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