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2021-06-24gnu: Add cl-nst....Initiate new lisp-check module the same way as other language specific ones (python-check, haskell-check). * gnu/local.mk (GNU_SYSTEM_MODULES): Add lisp-check.scm. * gnu/packages/lisp-check.scm (sbcl-nst, ecl-nst, cl-nst): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Sharlatan Hellseher
2021-06-23gnu: cups: Add replacement to fix CVE-2020-10001....* gnu/packages/patches/cups-CVE-2020-10001.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cups.scm (cups-minimal/fixed): New variable. (cups-minimal)[replacement]: Assign it to new field. Tobias Geerinckx-Rice
2021-06-21gnu: Add tlf....* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file. * gnu/local.mk: Add it. * gnu/packages/radio.scm (tlf): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Jack Hill
2021-06-20gnu: linkchecker: Update to 10.0.1....* gnu/packages/web.scm (linkchecker): Update to 10.0.1. [source]: Remove patches. [inputs]: Add python-beautifulsoup4. Replace python2-dnspython-1.16, python2-pyxdg and python2-requests with python-dnspython, python-pyxdg and python-requests respectively. [native-inputs]: Replace python2-pytest, python2-miniboa and python2-parameterized with python-pytest, python-miniboa and python-parameterized respectively. [arguments]: Use python 3. Replace check phase instead of deleting the standard phase and adding a custom one. Use add-installed-pythonpath instead of setting PYTHONPATH directly. Support disabling of tests with tests?. [home-page]: Update URI. * gnu/packages/patches/linkchecker-tests-require-network.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Arun Isaac
2021-06-19gnu: Remove bsdiff traces....This is a follow-up to 373c7b5791acd8f377455be47260948b843dd5db. * gnu/packages/patches/bsdiff-CVE-2014-9862.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Marius Bakke
2021-06-19gnu: efivar: Adjust for GCC 10....* gnu/packages/patches/efivar-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/linux.scm (efivar)[source](patches, modules, snippet): New fields. [arguments]: Use CC-FOR-TARGET while at it. Marius Bakke
2021-06-19gnu: jfsutils: Adjust for GCC 10....* gnu/packages/patches/jfsutils-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/file-systems.scm (jfsutils)[source](patches): Add it. Marius Bakke
2021-06-19gnu: isc-dhcp: Adjust for GCC 10....* gnu/packages/patches/isc-dhcp-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/admin.scm (isc-dhcp)[source](patches): New field. Marius Bakke
2021-06-19gnu: ath9k-htc-firmware: Adjust for GCC 10....* gnu/packages/patches/ath9k-htc-firmware-gcc-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/firmware.scm (ath9k-htc-firmware)[source](patches): Add it. Marius Bakke
2021-06-19gnu: QEMU: Adjust for Sphinx 4.0....* gnu/packages/patches/qemu-sphinx-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it. Marius Bakke
2021-06-18gnu: curl@7.77.0: Provide a correct TLS priority string....Fixes <https://bugs.gnu.org/49035>. * gnu/packages/patches/curl-7.77-tls-priority-string.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/curl.scm (curl-7.77.0)[source]: Use it. Ludovic Courtès
2021-06-18gnu: inkscape: Update to version 1.1....* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/inkscape.scm (inkscape-1.0) Rename to inkscape-1.1. * gnu/packages/inkscape.scm (inkscape-1.1) Update to version 1.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Boris A. Dekshteyn
2021-06-17gnu: brightnessctl: Add elogind support....* gnu/packages/patches/brightnessctl-elogind-support.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (brightnessctl)[source]: Apply it. [make-flags]: Enable logind support. [native-inputs]: Add pkg-config. [inputs]: Add elogind. Brice Waegeneire
2021-06-16gnu: HexChat: Add Libera Chat to the list of networks....* gnu/packages/patches/hexchat-add-libera-chat.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/messaging.scm (hexchat)[source]: Use it. Leo Famulari
2021-06-16gnu: Add rust-ndarray-0.13....* gnu/packages/crates-io.scm (rust-ndarray-0.13): New variable. (rust-ndarray-0.12): Inherit from above. * gnu/packages/patches/rust-ndarray-0.13-remove-blas-src.patch: New file. * gnu/local.mk: Register new file. Nicolas Goaziou
2021-06-14gnu: tor: Update to 0.4.6.5....* gnu/packages/tor.scm (tor): Update to 0.4.6.5. [source]: Add a patch to fix building with GCC 7. * gnu/packages/patches/tor-fix-build-with-gcc-7.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-06-14gnu: gcc-8: Make static libs reproducible...This fixes the nonreproducibility in gcc documented here: https://reproducible-builds.org/docs/archives/#gnu-libtool * gnu/packages/patches/gcc-8-sort-libtool-find-output.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gcc.scm (gcc-8)[source]: Apply it. Carl Dong
2021-06-14gnu: Add irods....* gnu/packages/irods.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2021-06-14gnu: nettle-3.5: Add replacement to fix CVE-2021-3580 et al....* gnu/packages/patches/nettle-3.5-check-_pkcs1_sec_decrypt-msg-len.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt1.patch, gnu/packages/patches/nettle-3.5-CVE-2021-3580-pt2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/nettle.scm (nettle)[replacement]: New field. (nettle-3.5/fixed): New variable. Mark H Weaver
2021-06-13gnu: connman: Fix CVE-2021-33833....* gnu/packages/patches/connman-CVE-2021-33833.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/connman.scm (connman)[source]: Use it. Leo Famulari
2021-06-13gnu: QEMU: Fix compatibility with Meson 0.58....* gnu/packages/patches/qemu-meson-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/virtualization.scm (qemu)[source](patches): Add it. Marius Bakke
2021-06-13gnu: libcacard: Update to 2.8.0....* gnu/packages/patches/libcacard-unknown-variable.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/spice.scm (libcacard): Update to 2.8.0. [source](patches): New field. [arguments]: Remove trailing #t. Marius Bakke
2021-06-12gnu: grub: Update to 2.06....[source]: Remove upstreamed patches. * gnu/packages/patches/grub-setup-root.patch: Update patch. * gnu/packages/patches/grub-verifiers-Blocklist-fallout-cleanup.patch, gnu/packages/patches/grub-cross-system-i686.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. Tobias Geerinckx-Rice
2021-06-08gnu: polkit: Add replacement for CVE-2021-3560....* gnu/packages/patches/polkit-CVE-2021-3560.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/polkit.scm (polkit/fixed): New variable. (polkit)[replacement]: New field. Ludovic Courtès
2021-06-07gnu: xpra: Update to 4.2....Fixes <https://issues.guix.gnu.org/issue/48890>. * gnu/packages/xorg.scm (xpra): Update to 4.2. [source]: Switch to ".tar.gz" archive and update patch file. [native-inputs]: Add pandoc. [arguments]: Adjust custom 'fix-paths phase for changes in source. * gnu/packages/patches/xpra-4.2-systemd-run.patch: Adapt to new version and rename file. * gnu/local.mk (dist_patch_DATA): Rename file. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> Lars-Dominik Braun
2021-06-06gnu: freebayes: Update to 1.3.5....* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.5. [source]: Remove patch. [arguments]: Adjust custom 'patch-source phase for changes in source. [inputs]: Remove zlib. * gnu/packages/patches/freebayes-devendor-deps.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-06-05gnu: wgetpaste: Update to 2.32....* gnu/packages/wget.scm (wgetpaste): Update to 2.32. [source]: Remove patch. * gnu/packages/patches/wgetpaste-update-bpaste.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-06-05gnu: nsis: Respect SOURCE-DATE-EPOCH for reproducibility...* gnu/packages/patches/nsis-source-date-epoch.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/installers.scm (make-nsis)[source]: Apply it. Carl Dong
2021-06-03gnu: amule: Update to 2.3.3....* gnu/packages/networking.scm (amule): Update to 2.3.3. [source]: Remove patch. * gnu/packages/patches/amule-crypto-6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-30gnu: julia-jllwrappers: Move to (gnu packages julia-jll)....* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ... * gnu/packages/julia-jll.scm: ... here. * gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm Efraim Flashner
2021-05-29gnu: Register gnu/services/ci.scm and gnu/tests/ci.scm....This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and gnu/tests/ci.scm. Arun Isaac
2021-05-29gnu: Add mosaicatcher....* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bioinformatics.scm (mosaicatcher): New variable. Ricardo Wurmus
2021-05-27gnu: lksctp-tools: Update to 1.0.19....* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19. [source]: Remove patch. * gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-26gnu: minimap2: Update to 2.18....* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18. [source]: Remove patch. * gnu/packages/patches/minimap2-aarch64-support.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2021-05-25gnu: Remove unnecessary patches for emacs-geiser....* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch: * gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Apply file removal. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Alexandr Vityazev
2021-05-22gnu: autotrace: Prepare for GLib 2.68 and later....* gnu/packages/patches/autotrace-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (autotrace)[source](patches): New field. Marius Bakke
2021-05-22gnu: libblockdev: Prepare for GLib 2.58....* gnu/packages/patches/libblockdev-glib-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/disk.scm (libblockdev)[source](patches): New field. Marius Bakke
2021-05-22gnu: ucx: Restore (and adapt) ioctl fallback patch....This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which removed the patch, but it was still necessary for some dependents. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx)[source](patches): New field. Marius Bakke
2021-05-21gnu: pinball: Update to 3.1.20201218....* gnu/packages/games.scm (pinball): Update to 3.1.20201218. [source]: Tarballs no longer published on sourceforge, so use git-fetch. [native-inputs]: New field for bootstrapping inputs. [inputs]: Add libltdl. [arguments]: Add custom 'bootstrap' phase. * gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source. * gnu/packages/patches/pinball-const-fix.patch, gnu/packages/patches/pinball-cstddef.patch, gnu/packages/patches/pinball-missing-separators.patch, gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches. * gnu/local.mk (dist_patch_DATA): Remove them. Eric Bavier
2021-05-18gnu: Add libxml2-xpath0....* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file... * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/xml.scm (libxml2-xpath0): New variable. Signed-off-by: Marius Bakke <marius@gnu.org> David Larsson
2021-05-18gnu: ucx: Update to 1.9.0....* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fabric-management.scm (ucx): Update to 1.9.0. [source](patches): Remove. Marius Bakke
2021-05-18gnu: rxvt-unicode: Update to 9.26....* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26. [source]: Remove upstreamed patch. * gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-17gnu: disarchive: Fix build when cross-compiling....This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix for i586-pc-gnu (Hurd). * gnu/packages/patches/disarchive-cross-compilation.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/backup.scm (disarchive)[source]: Apply it. [phases]{delete-configure}: New phase. [native-inputs]: Add guile-3.0 and guile-gcrypt. Maxim Cournoyer
2021-05-16gnu: mercurial: Patch to make it read HGEXTENSIONPATH....This will make Mercurial be able to find third-party extensions installed with Guix, without having to set PYTHONPATH. * gnu/packages/patches/mercurial-hg-extension-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch. * gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the patch. [native-search-paths]: Add HGEXTENSIONPATH. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-05-15gnu: Graphviz: Fix CVE-2020-18032....* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/graphviz.scm (graphviz)[replacement]: New field. (graphviz/fixed): New variable. Leo Famulari
2021-05-13gnu: hplip: Update to 3.21.4....* gnu/packages/cups.scm (hplip): Update to 3.21.4. [source]: Remove fussy patch. Replace it with an short snippet substitution and... [arguments]: ...the new "--disable-imageProcessor-build" configure flag. * gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-05-13gnu: snappy: Update to 1.1.9....* gnu/packages/compression.scm (snappy): Update to 1.1.9. [source]: Add another patch. [arguments]: Add new #:configure-flags and an 'unpack-third_party-subprojects phase. [native-inputs]: Add the sources for benchmark and googletests. * gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-05-11gnu: Add giara....* gnu/packages/syndication.scm (giara): New variable. * gnu/packages/patches/giara-fix-login.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Raghav Gururajan
2021-05-09gnu: ExifTool: Fix CVE-2021-22204...* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it. Leo Famulari
2021-05-05gnu: Add tla2tools....This introduces tla2tools.jar, which contains the TLA+ model checker and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX typesetting system; PlusCal translator; and more. I have added five wrapper scripts for convenience, rather than invoking `java' manually. The wrapper scripts are not comprehensive; users who are familiar with tla2tools.jar, or have read the book Specifying Systems, may still invoke the commands in the traditional way. The minimum JDK version is 11. I chose to stick with that rather than bumping it to 14 (which is the largest version currently in Guix) because each OpenJDK version in Guix depends on the version before it, and so it needlessly results in many 100s of MiB of unnecessary dependencies. Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used with TLA+. * gnu/packages/java.scm (tla2tools): New variable. * gnu/packages/patches/tla2tools-build-xml.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Mike Gerwitz
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