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2019-12-05gnu: swig: Update to 4.0.1.Marius Bakke
* gnu/packages/patches/swig-guile-gc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/swig.scm (swig): Update to 4.0.1. [source](patches): Remove. [arguments]: Remove 'set-env' phase. [inputs]: Change GUILE-2.0 to GUILE-2.2.
2019-12-05gnu: findutils: Update to 4.7.0.Marius Bakke
* gnu/packages/patches/findutils-gnulib-libio.patch, gnu/packages/patches/findutils-makedev.patch, gnu/packages/patches/findutils-test-xargs.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (findutils): Update to 4.7.0. [source](uri): Adjust for file name change. [source](snippet): Remove. [source](patches): Remove obsolete. [arguments]: Remove obsolete workaround. Add phase to patch tests. * gnu/packages/commencement.scm (findutils-boot0)[arguments]: Allow 32-bit time_t on 64-bit systems.
2019-12-05gnu: libffi: Update to 3.3.Marius Bakke
* gnu/packages/patches/libffi-3.2.1-complex-alpha.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/libffi.scm (libffi): Update to 3.3. [source](patches): Remove. * gnu/packages/python.scm (python-3.7)[arguments]: Remove workaround.
2019-12-05gnu: glibc: Update to 2.30.Marius Bakke
* gnu/packages/patches/glibc-CVE-2019-19126.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (glibc): Update to 2.30. [source](patches): Adjust for 2.30. (glibc-2.29): New public variable.
2019-12-05Merge branch 'master' into core-updatesMarius Bakke
2019-12-05gnu: Really move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-05Revert "gnu: Properly move lisp libraries to lisp-xyz, uglify-js to ↵Tobias Geerinckx-Rice
javascript and stumpwm to wm." This reverts commit ac1ee30f4f7f9d0ae2a655676b0e8b9eb90a35dd, which still breaks ‘guix pull’.
2019-12-05gnu: Properly move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Pierre Neidhardt
stumpwm to wm. * gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm. * guix/build-system/minify.scm (default-uglify-js): Find uglify-js in javascript module instead of lisp.
2019-12-04gnu: libjpeg-turbo: Fix CVE-2019-13960 and CVE-2019-2201.Marius Bakke
* gnu/packages/patches/libjpeg-turbo-CVE-2019-2201.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image.scm (libjpeg-turbo/fixed): New variable. (libjpeg-turbo)[replacement]: New field.
2019-12-04gnu: feh: Update to 3.3.Marius Bakke
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (feh): Update to 3.3. [source](patches): Remove.
2019-12-04Merge branch 'staging'Marius Bakke
2019-12-04gnu: icecat: Update to 68.3.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2019-11745, CVE-2019-17005, CVE-2019-17008, CVE-2019-17009, CVE-2019-17010, CVE-2019-17011, and CVE-2019-17012. * gnu/packages/patches/icecat-gnuzilla-fixes.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update hash for the firefox source tarball. Update to the latest from gnuzilla.git. Don't apply icecat-gnuzilla-fixes.patch. Remove determinism fix in makeicecat that is now upstream. Tweak a status message. (icecat)[arguments]: Add "--with-unsigned-addon-scopes=app" configure flag. * gnu/packages/patches/icecat-makeicecat.patch: Adapt.
2019-12-03gnu: handbrake: Upgrade to 1.3.0.Eric Bavier
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove patch. [native-inputs]: Remove cmake and curl. [inputs]: Add dav1d and numactl. [arguments]: Add "--disable-nvenc" to configure flags in place of patch. Adjust "bootstrap" phase in response to upstream changes. Add "patch-SHELL" and "relax-reqs" phases.
2019-12-03gnu: pugixml: Update to 1.10.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (pugixml): Update to 1.10. [source]: Remove obsolete patch. * gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-02gnu: python-scikit-image: Move to (gnu packages python-science).Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-scikit-image, python2-scikit-image): Move these two from here... * gnu/packages/python-science.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2019-12-01gnu: thermald: Update to 1.9.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thermald): Update to 1.9. [source]: Remove patch. * packages/patches/thermald-make-int-max32-visible.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-01gnu: fcgi: Update to 2.4.2.Tobias Geerinckx-Rice
* gnu/packages/web.scm (fcgi): Update to 2.4.2. [source]: Use GIT-FETCH and GIT-FILE-NAME. Remove obsolete patches. [native-inputs]: Add autoconf, automake, and libtool. * gnu/packages/patches/fcgi-2.4.0-gcc44-fixes.patch, gnu/packages/patches/fcgi-2.4.0-poll.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-11-30gnu: retroarch: Disable the on-line updater.Tobias Geerinckx-Rice
Addresses <http://issues.guix.gnu.org/issue/38360>. * gnu/packages/emulators.scm (retroarch)[source]: Add patch and snippet. * packages/patches/retroarch-disable-online-updater.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-30gnu: ocaml-piqilib: Update to 0.6.15.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-piqilib): Update to 0.6.15. [source]: Remove patch. [native-inputs]: Remove camlp4. [propagated-inputs]: Replace ulex with sedlex. * gnu/packages/patches/ocaml-piqilib-Update-base64.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-29gnu: openmpi: Increase priority of the PSM component.Ludovic Courtès
* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to... * gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk to change the priority of PSM. * gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-29gnu: xinetd: Update to 2.3.15.4 [fix build].Tobias Geerinckx-Rice
* gnu/packages/web.scm (xinetd): Update to 2.3.15.4. [source]: Switch to openSUSE (and Debian) maintenance fork. Remove obsolete patches. [native-inputs]: Add automake, autoconf, libtool, and pkg-config. [home-page]: Update. * gnu/packages/patches/xinetd-CVE-2013-4342.patch, gnu/packages/patches/xinetd-fix-fd-leak.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2019-11-28Revert "gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and ↵Ricardo Wurmus
stumpwm to wm." This reverts commit abf43a67d5929bf279edce3e790ef1348dda32a5 as it broke "guix pull".
2019-11-28gnu: Move lisp libraries to lisp-xyz, uglify-js to javascript and stumpwm to wm.Pierre Neidhardt
* gnu/local.mk: Include lisp-xyz.scm. * gnu/packages/lisp-xyz.scm: New file. * gnu/packages/lisp.scm: Move all lisp libraries to lisp-xyz.scm, uglify-js to javascript.scm and stumpwm to wm.scm. * gnu/packages/javascript.scm: Add uglify-js. * gnu/packages/wm.scm: Add stumpwm. * gnu/packages/bioinformatics.scm: Find uglify-js in javascript.scm. * gnu/packages/machine-learning.scm: Depend on lisp-xyz.scm instead of lisp.scm. * gnu/packages/web.scm: Find uglify-js in javascript.scm. * gnu/packages/web-browsers.scm: Depend on lisp-xyz.scm instead of lisp.scm.
2019-11-28gnu: psm: Disable memory statistics code.Ludovic Courtès
* gnu/packages/patches/psm-disable-memory-stats.patch: New file. * gnu/packages/linux.scm (psm)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28services: Add pam-mount.Guillaume Le Vaillant
* gnu/services/pam-mount.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (PAM Mount Service): New subsection. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-28Merge branch 'master' into stagingMarius Bakke
2019-11-28gnu: feh: Adapt tests for imlib2 1.6.Pierre Langlois
* gnu/packages/patches/feh-fix-tests-for-imlib2-1.6.patch: New file. * gnu/packages/image-viewers.scm (feh)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-11-26gnu: gsl: Update to 2.6.Efraim Flashner
* gnu/packages/maths.scm (gsl): Update to 2.6. [source]: Remove patch. * gnu/packages/patches/gsl-test-i686.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-11-26gnu: Add pam-mount.Guillaume Le Vaillant
* gnu/packages/admin.scm (pam-mount): New variable. * gnu/packages/patches/pam-mount-luks2-support.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-11-22gnu: xsane: Fix snprintf buffer length.Tobias Geerinckx-Rice
* gnu/packages/scanner.scm (xsane)[source]: Add patch. * gnu/packages/patches/xsane-fix-snprintf-buffer-length.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-22gnu: Register xsane patches.Tobias Geerinckx-Rice
This follows up on commit a608666d74f156819cecfabaf72290726d7964e6. * gnu/local.mk (dist_patch_DATA): Add missing patches.
2019-11-22gnu: libseccomp: Fix build on AArch64.Ludovic Courtès
This is a followup to d100d5d5449eabd65e9c26081b7620a3d342c9eb. * gnu/packages/patches/libseccomp-open-aarch64.patch: New file. * gnu/packages/linux.scm (libseccomp)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-21Merge branch 'master' into stagingMarius Bakke
2019-11-21gnu: hexchat: Fix crash on exit.Julien Lepiller
* gnu/packages/patches/hexchat-crash-exit.patch: New file. * gnu/packages/hexchat.scm (orgin): Add patch. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-20gnu: ghc-haddock-api: Update to 2.22.0.Timothy Sample
* gnu/packages/patches/ghc-haddock-api-fix-haddock.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-haddock-api): Update to 2.22.0. [source]: Use the new patch. [arguments]: Change the 'update-constraints' phase to allow newer versions of 'QuickCheck' and 'hspec'.
2019-11-20gnu: elm-compiler: Fix Cabal dependency constraints.Timothy Sample
This package used a patch to update the Cabal version constraints for 'language-glsl'. This is now done in a phase for consistency with other Haskell packages. * gnu/packages/elm.scm (elm-compiler): Add a phase that updates the Cabal file to allow for newer versions of 'ansi-terminal', 'containers', 'http-client', 'language-glsl', and 'network'. [source]: Remove 'elm-compiler-relax-glsl-bound.patch'. * gnu/packages/patches/elm-compiler-relax-glsl-bound.patch: Delete file. * gnu/local.mk: Remove it.
2019-11-20gnu: ghc-microlens-aeson: Patch tests for i686-linux.Timothy Sample
* gnu/packages/patches/ghc-microlens-aeson-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-microlens-aeson): Use it.
2019-11-20gnu: ghc-pandoc: Update to 2.7.3.Timothy Sample
* gnu/packages/haskell-xyz.scm (ghc-pandoc): Update to 2.7.3. [source]: Add patches to fix tests. [arguments]: Remove '#:phases'. [inputs]: Remove 'ghc-deepseq-generics', 'ghc-old-locale', and 'ghc-yaml'; add 'ghc-hslua-module-system', 'ghc-hsyaml', 'ghc-ipynb', and 'ghc-unicode-transforms'. [native-inputs]: Add 'ghc-tasty-lua'. * gnu/packages/patches/ghc-pandoc-fix-html-tests.patch: New file. * gnu/packages/patches/ghc-pandoc-fix-latex-test.patch: New file. * gnu/local.mk: Add them.
2019-11-20gnu: ghc-haddock-library: Update to 1.7.0.Timothy Sample
The new source tarball does not have bundled dependencies, so it does not need to be patched. * gnu/packages/haskell-xyz.scm (ghc-haddock-library): Update to 1.7.0. [source]: Remove 'patches', 'modules' and 'snippet'. [arguments]: Update the 'relax-test-suite-dependencies' phase to allow newer versions of 'hspec' and 'QuickCheck'; remove the 'add-examples-directory' phase. * gnu/packages/patches/ghc-haddock-library-unbundle.patch: Delete file. * gnu/local.mk: Remove it.
2019-11-20gnu: ghc-hpack: Update to 0.31.2.Timothy Sample
* gnu/packages/haskell-xyz.scm (ghc-hpack): Update to 0.31.2. [source]: Use a patch to fix tests. [inputs]: Add 'ghc-infer-license'. * gnu/packages/patches/ghc-hpack-fix-tests.patch: New file. * gnu/local.mk: Add it.
2019-11-20gnu: ghc-monad-par: Add a patch to fix tests on GHC 8.6.Timothy Sample
* gnu/packages/patches/ghc-monad-par-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-monad-par): Use it.
2019-11-20gnu: ghc-diff: Patch to work with newer QuickCheck.Timothy Sample
* gnu/packages/patches/ghc-diff-swap-cover-args.patch: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-diff): Use it.
2019-11-20gnu: Register python-3.8 patches.Efraim Flashner
This is a follow-up to af6a9fc27622ea8a342fe18c8604f2fe64a04e68. * gnu/local.mk (dist_patch_DATA): Register python-3.8-search-paths.patch, python-3.8-fix-tests.patch.
2019-11-19gnu: Add minisat.Robert Smith
* gnu/packages/patches/minisat-friend-declaration.patch: New file. * gnu/packages/patches/minisat-install.patch: New file. * gnu/local.mk (dist_patch_DATA): Add both files above. * gnu/packages/maths.scm (minisat): New exported variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com>
2019-11-16gnu: ucx: Avoid relying on /sys/class/net.Ludovic Courtès
This fixes test failures of packages that use Open MPI, whereby UCX would error out due to /sys/class/net being unavailable in the build chroot that the daemon sets up. * gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file. * gnu/packages/fabric-management.scm (ucx)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-16Merge remote-tracking branch master into core-updatesMathieu Othacehe
2019-11-15gnu: tomb: Update to 2.7.Eric Bavier
* gnu/packages/patches/tomb-fix-errors-on-open.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/crypto.scm (tomb): Update to 2.7. [source]: Use the patch.
2019-11-15Merge branch 'master' into stagingMarius Bakke
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès
This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
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