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2021-10-08gnu: pigx-bsseq: Remove dependency on pandoc-citeproc....* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it. [native-inputs]: Add automake/autoconf. Lars-Dominik Braun
2021-10-08gnu: ngless: Fix build....Apply upstream patch to restore compatibility with current Stackage. * gnu/packages/patches/ngless-unliftio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bioinformatics.scm (ngless): Use it. Lars-Dominik Braun
2021-10-08gnu: idris: Fix build....Backport some commits from upstream. * gnu/packages/patches/idris-build-with-haskeline-0.8.patch: * gnu/packages/patches/idris-build-with-megaparsec-9.patch: New patches * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/idris.scm (idris): Use them. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> Xinglu Chen
2021-10-08gnu: hedgewars: Fix build....* gnu/packages/patches/hedgewars-network-bsd.patch: Import upstream patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/games.scm (hedgewars): Use it. Lars-Dominik Braun
2021-10-08gnu: cabal-install: Build with GHC 8.10....* gnu/packages/patches/cabal-install-base16-bytestring1.0.patch: New patch. * gnu/packages/patches/cabal-install-ghc8.10.patch: Ditto. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/haskell-apps.scm (cabal-install) [source]: Use them. Lars-Dominik Braun
2021-10-08gnu: Update Haskell ecosystem....Bump packages’ versions to the lastest Stackage or Hackage release. Since packages are interdependent, do so in a single commit. 525 packages have been updated. These packages have been removed, because they fail to build, have no newer version available and no dependencies: corrode ghc-easytest ghc-edisonapi ghc-edisoncore ghc-pandoc-types ghc-regex-tdfa-text These have been removed, because they are no longer required: ghc-happy-1.19.9 ghc-prettyprinter-1.6 ghc-protolude-0.3 ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc does not use them any more. Co-authored-by: Xinglu Chen <public@yoctocell.xyz> Lars-Dominik Braun
2021-10-08gnu: ocaml-cairo2: Update to 0.6.2....* gnu/packages/ocaml.scm (ocaml-cairo2): Update to 0.6.2. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Remove file. * gnu/local.scm (dist_patch_DATA): Remove it. Julien Lepiller
2021-10-08gnu: ceph: Fix breaking change in snappy....* gnu/packages/storage.scm (ceph)[source]: Add patch. * gnu/packages/patches/ceph-fix-snappy-breaking-change.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org> Greg Hogan
2021-10-07gnu: llvm-3.6: Fix build....* gnu/packages/patches/llvm-3.6-fix-build-with-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (llvm-3.6)[source]: Use it. Guillaume Le Vaillant
2021-10-06gnu: Add jsoncpp-with-pkg-version....* gnu/packages/patches/jsoncpp-pkg-config-version: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/serialization.scm (jsoncpp-with-pkg-version): New variable. Mathieu Othacehe
2021-10-05gnu: php: Patch failing test case....Fixes a failing test case in PHP (Zend/tests/bug74093.phpt). See <https://github.com/php/php-src/pull/7555/files> for upstream status. * gnu/packages/php.scm (php)[source]: Add patch. * gnu/packages/patches/php-bug-74093-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Ryan Sundberg via Guix-patches via
2021-10-05gnu: p11-kit: Fix Hurd build....* gnu/packages/patches/p11-kit-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (p11-kit)[native-inputs]: Add autoconf, automake, gettext and libtool when targeting Hurd. [inputs]: Add libbsd and hurd-patch when targeting hurd. [arguments]: Add 'apply-hurd-patch and 'bootstrap phases when targeting Hurd. Mathieu Othacehe
2021-10-04gnu: diffoscope: Update to 186....* gnu/packages/diffoscope.scm (diffoscope): Update to 186. [source]: Add patch. [arguments]: Add a new 'fix-failing-tests phase. Don't explicitly return #t from phases. * gnu/packages/patches/diffoscope-fix-test_item3_deflate_llvm_bitcode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-10-04gnu: libcacard: Update to 2.8.1....* gnu/packages/spice.scm (libcacard): Update to 2.8.1. [source]: Remove patch. * gnu/packages/patches/libcacard-unknown-variable.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-10-03gnu: range-v3: Fix build....* gnu/packages/patches/range-v3-build-with-gcc10.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/cpp.scm (range-v3)[source]: Use patch. [native-inputs]: Add gcc@9 for a succesful build. Jonathan Brielmaier
2021-10-03gnu: hexchat: Update to 2.16.0....* gnu/packages/messaging.scm (hexchat): Update to 2.16.0. [source]: Remove patch. [inputs]: Remove libnotify and libproxy. Upgrade python-2 to python@3. Add python-cffi and bash-minimal. [arguments]: Don't explicitly return #t from phases. Add a new 'wrap-program phase. Tobias Geerinckx-Rice
2021-10-03gnu: ccache: Update to 4.4.2....* gnu/packages/ccache.scm (ccache): Update to 4.4.2. [source]: Remove patch. [arguments]: Substitute nonexistent compgen. * gnu/packages/patches/ccache-fix-basedir-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Tobias Geerinckx-Rice
2021-10-02services: gdm: Add Wayland support....* gnu/packages/patches/gdm-wayland-session-wrapper-from-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland-session]: New field. (gdm-wayland-session-wrapper): New procedure. (gdm-configuration-file): Point to this new procedure. * doc/guix.texi (X Window): Update it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Josselin Poiret
2021-10-02gnu: Add Wayland support for GDM....Add the optional flag `wayland?` in `gdm-configuration` to launch GDM with Wayland, enabling the use of Wayland sessions with GDM. * gnu/packages/patches/gdm-remove-hardcoded-xwayland-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland?]: New field. (gdm-configuration): Honor it. (gdm-shepherd-service): Add the XCURSOR_PATH environment variable. * doc/guix.texi (X Window): Document it Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Josselin Poiret
2021-10-02gnu: gnome-shell: Update to 40.5....Remove the theme patch that does not apply anymore because the CSS files have been revamped. * gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: Remove it. * gnu/packages/patches/gnome-shell-theme: Remove it. * gnu/packages/patches/gnome-shell-disable-test.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-shell): Update to 40.5. [source]: Fix the URI. Update the patches. Remote the snippet. [arguments]: Remove trailing #t. <#:phases>: Add a 'skip-gtk-update-icon-cache phase. Remove the 'convert-logo-to-png phase. Remove the inkscape disallowed reference. [native-inputs]: Remove inkscape. Add hicolor-icon-theme. [inputs]: Add gtk and graphene. [properties]: Remove it. Mathieu Othacehe
2021-10-02gnu: gnome-online-miners: Fix build....* gnu/packages/patches/gnome-online-miners-tracker-3.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/gnome.scm (gnome-online-miners)[source]: Use it. [arguments]: Add a 'fix-configure and a 'autoreconf phase. [inputs]: Add autoconf, automake and libtool. Mathieu Othacehe
2021-10-02gnu: gdm: Update to 40.1....* gnu/packages/patches/gdm-elogind-support.patch: New file. * gnu/packages/patches/gdm-default-session.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Add the new patch. * gnu/packages/gnome.scm (gdm): Update to 40.1. [source]: Add the gdm-elogind-support support. [build-system]: Switch to meson-build-system. [arguments]<#:glib-or-gtk>: Set to true. <#:configure-flags>: Convert to meson options. Add logind-provider, systemsystemunitdir and systemduserunitdir options. <#:phases>{pre-configure}: Remove the libelogind intoduction that is now handled by the patch. Remove trailing #t. [inputs]: Add eudev. Mathieu Othacehe
2021-10-02gnu: gvfs: Update to 1.48.1....* gnu/packages/patches/gvfs-add-support-for-libplist-2.2.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gvfs)[source]: Remove the patch. [inputs]: Switch to fuse@3 and add gsettings-desktop-schemas. [properties]: Remove it. [description]: Wrap it. Mathieu Othacehe
2021-10-02gnu: gnome-todo: Update to 40.1....* gnu/packages/patches/gnome-todo-delete-esource-duplicate.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-todo): Update to 40.1. [source]: Fix the URL. [arguments]: Remove the 'wrap-gnome-todo phase and add a 'skip-gtk-update-icon-cache phase. Disable the tests. [native-inputs]: Switch from gtk+ to gtk. [inputs]: Add gtk, libadwaita and libportal. Mathieu Othacehe
2021-10-02gnu: Add gtk....* gnu/packages/gtk.scm (gtk): New variable. * gnu/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Raghav Gururajan
2021-10-01gnu: gdb-9.2: Fix build with GCC 10 on powerpc64le-linux....* gnu/packages/patches/gdb-9.2-sim-ppc-fno-common.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gdb.scm (gdb-9.2)[source]: Use it. Thiago Jung Bauermann
2021-09-29gnu: guile-email: Fix build....* gnu/packages/patches/guile-email-fix-tests.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/guile-xyz.scm (guile-email): Use it. Mathieu Othacehe
2021-09-29gnu: mariadb: Update to 10.5.12....* gnu/packages/databases.scm (mariadb): Update to 10.5.12. [source]: Remove patches. [arguments]: In custom 'adjust-tests phase, update list of skipped tests. Also remove tests already listed in mysql-test/unstable-tests. * gnu/packages/patches/mariadb-CVE-2021-27928.patch, gnu/packages/patches/mariadb-cmake-compat.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2021-09-28gnu: syslinux: Fix build....* gnu/packages/patches/syslinux-gcc10.patch: New file. * gnu/packages/patches/syslinux-strip-gnu-property.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add them. * gnu/packages/bootloaders.scm (syslinux)[source]: Use them. [arguments]: Only strip debug symbols. Mathieu Othacehe
2021-09-28gnu: sbcl-burgled-batteries3: Fix compiling with sbcl >= 2.1.6....* gnu/packages/patches/sbcl-burgled-batteries3-fix-signals.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-burgled-batteries3)[source]: Use it. Guillaume Le Vaillant
2021-09-28gnu: sbcl-png: Fix compiling with sbcl >= 2.1.6....* gnu/packages/patches/sbcl-png-fix-sbcl-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-png)[source]: Use it. Guillaume Le Vaillant
2021-09-28gnu: ccache: Update to 4.4.1....* gnu/packages/ccache.scm (ccache): Update to 4.4.1. [source]: Add patch. [arguments]: Remove explicit #t return values from phases. * gnu/packages/patches/ccache-fix-basedir-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-09-27Merge branch 'wip-guix-home'Oleg Pykhalov
2021-09-26gnu: Add patool....* gnu/packages/patool.scm: New module. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it. Maxim Cournoyer
2021-09-25gnu: Add xgboost....* gnu/packages/machine-learning.scm (xgboost): New variable. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name> Vinicius Monego
2021-09-24gnu: Add NNPACK....* gnu/packages/machine-learning.scm (nnpack): New variable. * gnu/packages/patches/nnpack-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Ludovic Courtès
2021-09-23gnu: ungoogled-chromium: Update to 93.0.4577.82-0.3f62dbc....* gnu/packages/patches/ungoogled-chromium-ffmpeg-compat.patch, gnu/packages/patches/ungoogled-chromium-system-nspr.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for version 93. (%chromium-version): Set to 93.0.4577.82. (%ungoogled-revision): Set to 93.0.4577.82-1-2-g3f62dbc. (%debian-patches): Remove 'system/nspr.patch'. (%ungoogled-origin): Update source hash. (%guix-patches): Add 'ungoogled-chromium-ffmpeg-compat.patch' and 'ungoogled-chromium-system-nspr.patch'. (ungoogled-chromium-snippet): Remove PYTHON-2 usage. Don't unbundle 'snappy'. (libvpx/chromium): Remove variable. (ungoogled-chromium)[source]: Update hash. [arguments]: Add "is_cfi=false", "use_thin_lto=false", and "blink_enable_generated_code_formatting=false". [native-inputs]: Change CLANG-11 to CLANG-12. Change NODE to NODE-LTS. Add PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB. Remove PYTHON-2. [inputs]: Change LIBVPX/CHROMIUM to LIBVPX. Marius Bakke
2021-09-23gnu: LLVM, Clang: Update to 12.0.1....* gnu/packages/patches/clang-12-tools-extra-directory.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12): Update to 12.0.1. (clang-12): Likewise. Remove obsolete patch. Marius Bakke
2021-09-21gnu: ntfs-3g: Update to 2021.8.22 [security fixes]....The upstream security advisory is named NTFS3G-SA-2021-0001. Fixes CVE-2021-33285, CVE-2021-35269, CVE-2021-35268, CVE-2021-33289, CVE-2021-33286, CVE-2021-35266, CVE-2021-33287, CVE-2021-35267, CVE-2021-39251, CVE-2021-39252, CVE-2021-39253, CVE-2021-39254, CVE-2021-39255, CVE-2021-39256, CVE-2021-39257, CVE-2021-39258, CVE-2021-39259, CVE-2021-39260, CVE-2021-39261, CVE-2021-39262, CVE-2021-39263. For more information: https://seclists.org/oss-sec/2021/q3/139 * gnu/packages/linux.scm (ntfs-3g): Update to 2021.8.22. [source]: Remove obsolete patch. * gnu/packages/patches/ntfs-3g-CVE-2019-9755.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Leo Famulari
2021-09-21gnu: patchutils: Update to 0.4.2....* gnu/packages/patchutils.scm (patchutils): Update to 0.4.2. [source]: Remove patch. [inputs]: Add ‘python’. [arguments]<#:phases>: Remove trailing #t. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-09-18gnu: mpg321: Fix compiling with gcc 10....* gnu/packages/patches/mpg321-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mp3.scm (mpg321)[source]: Use it. Guillaume Le Vaillant
2021-09-18gnu: gnunet: Fix libmicrohttpd test case using SSL3....* gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Patch for failing test case as suggested by libmicrohttpd mailing list * gnu/packages/gnunet.scm (libmicrohttpd): use patch * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> muradm
2021-09-17gnu: cheese: Fix build....* gnu/packages/patches/cheese-vala-update.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/gnome.scm (cheese)[source]: Use it. Mathieu Othacehe
2021-09-17Merge branch 'master' into core-updates-frozen... Conflicts: gnu/packages/bioinformatics.scm gnu/packages/chez.scm gnu/packages/docbook.scm gnu/packages/ebook.scm gnu/packages/gnome.scm gnu/packages/linux.scm gnu/packages/networking.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/tex.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/dune.scm guix/build-system/go.scm guix/build-system/linux-module.scm guix/packages.scm Marius Bakke
2021-09-16gnu: xygrib: Fix finding resources in the data directory....Currently, if you start up XyGrib it will not show icons in the toolbar buttons, translated strings in the UI nor the map in the main view. These are all items stored in the data directory, which XyGrib can’t find. Backport upstream PR 235 (already merged upstream) which makes it use XDG directories correctly. As a bonus, the PR also contains a fix to find libjpeg, so we don’t need the substitution for that anymore. * gnu/packages/patches/xygrib-fix-finding-data.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/geo.scm (xygrib)[source]: Use it. [arguments]<#:configure-flags>: Pass ‘-DGNU_PACKAGE=ON’. [arguments]<#:phases>{patch-directories}: Remove fix to find libjpeg. Remove trailing ‘#t’. [native-search-paths]: Add ‘XDG_DATA_DIRS’. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Thiago Jung Bauermann via Guix-patches via
2021-09-13home-services: Add Mcron....* gnu/home-services/mcron.scm: New file. * gnu/local.mk: Add this. * doc/guix.texi: Add documentation about Mcron Home Service. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Andrew Tropin
2021-09-11gnu: python-random2: Fix building with python 3.9....* gnu/packages/patches/python-random2-getrandbits-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-random2)[source]: Use it. Guillaume Le Vaillant
2021-09-10gnu: racket: fix `raco exe` with non-minimal Racket...This commit backports an upstream repair for a bug exposed by Guix's change in Racket 8.2 to make the `racket` package a layered/tethered installation that chains to the `racket-minimal` package. When using a layered/tethered installation, the `setup/variant` library would fail to recognize the default Racet variant (CS, 3M, or CGC), leading to confusing failures from `raco exe`, `create-embedding-executable`, and other clients. For further details, see <https://issues.guix.gnu.org/50118> and <https://github.com/racket/racket/issues/3969>. * gnu/packages/patches/racket-minimal-backport-1629887.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/racket.scm (racket-minimal)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-09-09gnu: go-github-com-urfave-cli-v2: Fix tests when building with Go 1.17....* gnu/packages/patches/go-github-com-urfave-cli-v2-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-github-com-urfave-cli-v2)[origin]: Apply it. Signed-off-by: Leo Famulari <leo@famulari.name> Sarah Morgensen
2021-09-09gnu: go-github-com-urfave-cli: Fix tests when building with Go 1.17....* gnu/packages/patches/go-github-com-urfave-cli-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-github-com-urfave-cli)[origin]: Apply it. Signed-off-by: Leo Famulari <leo@famulari.name> Sarah Morgensen
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