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2021-10-08gnu: pigx-bsseq: Remove dependency on pandoc-citeproc.Lars-Dominik Braun
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch. * gnu/local.mk: Register it. * gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it. [native-inputs]: Add automake/autoconf.
2021-10-08gnu: ngless: Fix build.Lars-Dominik Braun
Apply upstream patch to restore compatibility with current Stackage. * gnu/packages/patches/ngless-unliftio.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/bioinformatics.scm (ngless): Use it.
2021-10-08gnu: idris: Fix build.Xinglu Chen
Backport some commits from upstream. * gnu/packages/patches/idris-build-with-haskeline-0.8.patch: * gnu/packages/patches/idris-build-with-megaparsec-9.patch: New patches * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/idris.scm (idris): Use them. Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-10-08gnu: hedgewars: Fix build.Lars-Dominik Braun
* gnu/packages/patches/hedgewars-network-bsd.patch: Import upstream patch. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/games.scm (hedgewars): Use it.
2021-10-08gnu: cabal-install: Build with GHC 8.10.Lars-Dominik Braun
* gnu/packages/patches/cabal-install-base16-bytestring1.0.patch: New patch. * gnu/packages/patches/cabal-install-ghc8.10.patch: Ditto. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/haskell-apps.scm (cabal-install) [source]: Use them.
2021-10-08gnu: Update Haskell ecosystem.Lars-Dominik Braun
Bump packages’ versions to the lastest Stackage or Hackage release. Since packages are interdependent, do so in a single commit. 525 packages have been updated. These packages have been removed, because they fail to build, have no newer version available and no dependencies: corrode ghc-easytest ghc-edisonapi ghc-edisoncore ghc-pandoc-types ghc-regex-tdfa-text These have been removed, because they are no longer required: ghc-happy-1.19.9 ghc-prettyprinter-1.6 ghc-protolude-0.3 ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc does not use them any more. Co-authored-by: Xinglu Chen <public@yoctocell.xyz>
2021-10-08gnu: ocaml-cairo2: Update to 0.6.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-cairo2): Update to 0.6.2. * gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Remove file. * gnu/local.scm (dist_patch_DATA): Remove it.
2021-10-08gnu: ceph: Fix breaking change in snappy.Greg Hogan
* gnu/packages/storage.scm (ceph)[source]: Add patch. * gnu/packages/patches/ceph-fix-snappy-breaking-change.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2021-10-07gnu: llvm-3.6: Fix build.Guillaume Le Vaillant
* gnu/packages/patches/llvm-3.6-fix-build-with-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/llvm.scm (llvm-3.6)[source]: Use it.
2021-10-06gnu: Add jsoncpp-with-pkg-version.Mathieu Othacehe
* gnu/packages/patches/jsoncpp-pkg-config-version: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/serialization.scm (jsoncpp-with-pkg-version): New variable.
2021-10-05gnu: php: Patch failing test case.Ryan Sundberg via Guix-patches via
Fixes a failing test case in PHP (Zend/tests/bug74093.phpt). See <https://github.com/php/php-src/pull/7555/files> for upstream status. * gnu/packages/php.scm (php)[source]: Add patch. * gnu/packages/patches/php-bug-74093-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-10-05gnu: p11-kit: Fix Hurd build.Mathieu Othacehe
* gnu/packages/patches/p11-kit-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (p11-kit)[native-inputs]: Add autoconf, automake, gettext and libtool when targeting Hurd. [inputs]: Add libbsd and hurd-patch when targeting hurd. [arguments]: Add 'apply-hurd-patch and 'bootstrap phases when targeting Hurd.
2021-10-04gnu: diffoscope: Update to 186.Tobias Geerinckx-Rice
* gnu/packages/diffoscope.scm (diffoscope): Update to 186. [source]: Add patch. [arguments]: Add a new 'fix-failing-tests phase. Don't explicitly return #t from phases. * gnu/packages/patches/diffoscope-fix-test_item3_deflate_llvm_bitcode.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-10-04gnu: libcacard: Update to 2.8.1.Tobias Geerinckx-Rice
* gnu/packages/spice.scm (libcacard): Update to 2.8.1. [source]: Remove patch. * gnu/packages/patches/libcacard-unknown-variable.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-03gnu: range-v3: Fix build.Jonathan Brielmaier
* gnu/packages/patches/range-v3-build-with-gcc10.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/cpp.scm (range-v3)[source]: Use patch. [native-inputs]: Add gcc@9 for a succesful build.
2021-10-03gnu: hexchat: Update to 2.16.0.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (hexchat): Update to 2.16.0. [source]: Remove patch. [inputs]: Remove libnotify and libproxy. Upgrade python-2 to python@3. Add python-cffi and bash-minimal. [arguments]: Don't explicitly return #t from phases. Add a new 'wrap-program phase.
2021-10-03gnu: ccache: Update to 4.4.2.Tobias Geerinckx-Rice
* gnu/packages/ccache.scm (ccache): Update to 4.4.2. [source]: Remove patch. [arguments]: Substitute nonexistent compgen. * gnu/packages/patches/ccache-fix-basedir-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-02services: gdm: Add Wayland support.Josselin Poiret
* gnu/packages/patches/gdm-wayland-session-wrapper-from-env.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland-session]: New field. (gdm-wayland-session-wrapper): New procedure. (gdm-configuration-file): Point to this new procedure. * doc/guix.texi (X Window): Update it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-10-02gnu: Add Wayland support for GDM.Josselin Poiret
Add the optional flag `wayland?` in `gdm-configuration` to launch GDM with Wayland, enabling the use of Wayland sessions with GDM. * gnu/packages/patches/gdm-remove-hardcoded-xwayland-path.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (gdm): Use it. * gnu/services/xorg.scm (<gdm-configuration>)[wayland?]: New field. (gdm-configuration): Honor it. (gdm-shepherd-service): Add the XCURSOR_PATH environment variable. * doc/guix.texi (X Window): Document it Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-10-02gnu: gnome-shell: Update to 40.5.Mathieu Othacehe
Remove the theme patch that does not apply anymore because the CSS files have been revamped. * gnu/packages/patches/gnome-shell-CVE-2020-17489.patch: Remove it. * gnu/packages/patches/gnome-shell-theme: Remove it. * gnu/packages/patches/gnome-shell-disable-test.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-shell): Update to 40.5. [source]: Fix the URI. Update the patches. Remote the snippet. [arguments]: Remove trailing #t. <#:phases>: Add a 'skip-gtk-update-icon-cache phase. Remove the 'convert-logo-to-png phase. Remove the inkscape disallowed reference. [native-inputs]: Remove inkscape. Add hicolor-icon-theme. [inputs]: Add gtk and graphene. [properties]: Remove it.
2021-10-02gnu: gnome-online-miners: Fix build.Mathieu Othacehe
* gnu/packages/patches/gnome-online-miners-tracker-3.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/gnome.scm (gnome-online-miners)[source]: Use it. [arguments]: Add a 'fix-configure and a 'autoreconf phase. [inputs]: Add autoconf, automake and libtool.
2021-10-02gnu: gdm: Update to 40.1.Mathieu Othacehe
* gnu/packages/patches/gdm-elogind-support.patch: New file. * gnu/packages/patches/gdm-default-session.patch: Update it. * gnu/local.mk (DIST_PATCH_DATA): Add the new patch. * gnu/packages/gnome.scm (gdm): Update to 40.1. [source]: Add the gdm-elogind-support support. [build-system]: Switch to meson-build-system. [arguments]<#:glib-or-gtk>: Set to true. <#:configure-flags>: Convert to meson options. Add logind-provider, systemsystemunitdir and systemduserunitdir options. <#:phases>{pre-configure}: Remove the libelogind intoduction that is now handled by the patch. Remove trailing #t. [inputs]: Add eudev.
2021-10-02gnu: gvfs: Update to 1.48.1.Mathieu Othacehe
* gnu/packages/patches/gvfs-add-support-for-libplist-2.2.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gvfs)[source]: Remove the patch. [inputs]: Switch to fuse@3 and add gsettings-desktop-schemas. [properties]: Remove it. [description]: Wrap it.
2021-10-02gnu: gnome-todo: Update to 40.1.Mathieu Othacehe
* gnu/packages/patches/gnome-todo-delete-esource-duplicate.patch: Remove it. * gnu/local.mk (DIST_PATCH_DATA): Update it. * gnu/packages/gnome.scm (gnome-todo): Update to 40.1. [source]: Fix the URL. [arguments]: Remove the 'wrap-gnome-todo phase and add a 'skip-gtk-update-icon-cache phase. Disable the tests. [native-inputs]: Switch from gtk+ to gtk. [inputs]: Add gtk, libadwaita and libportal.
2021-10-02gnu: Add gtk.Raghav Gururajan
* gnu/packages/gtk.scm (gtk): New variable. * gnu/packages/patches/gtk4-respect-GUIX_GTK4_PATH.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-10-01gnu: gdb-9.2: Fix build with GCC 10 on powerpc64le-linux.Thiago Jung Bauermann
* gnu/packages/patches/gdb-9.2-sim-ppc-fno-common.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gdb.scm (gdb-9.2)[source]: Use it.
2021-09-29gnu: guile-email: Fix build.Mathieu Othacehe
* gnu/packages/patches/guile-email-fix-tests.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/guile-xyz.scm (guile-email): Use it.
2021-09-29gnu: mariadb: Update to 10.5.12.Efraim Flashner
* gnu/packages/databases.scm (mariadb): Update to 10.5.12. [source]: Remove patches. [arguments]: In custom 'adjust-tests phase, update list of skipped tests. Also remove tests already listed in mysql-test/unstable-tests. * gnu/packages/patches/mariadb-CVE-2021-27928.patch, gnu/packages/patches/mariadb-cmake-compat.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them.
2021-09-28gnu: syslinux: Fix build.Mathieu Othacehe
* gnu/packages/patches/syslinux-gcc10.patch: New file. * gnu/packages/patches/syslinux-strip-gnu-property.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add them. * gnu/packages/bootloaders.scm (syslinux)[source]: Use them. [arguments]: Only strip debug symbols.
2021-09-28gnu: sbcl-burgled-batteries3: Fix compiling with sbcl >= 2.1.6.Guillaume Le Vaillant
* gnu/packages/patches/sbcl-burgled-batteries3-fix-signals.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-burgled-batteries3)[source]: Use it.
2021-09-28gnu: sbcl-png: Fix compiling with sbcl >= 2.1.6.Guillaume Le Vaillant
* gnu/packages/patches/sbcl-png-fix-sbcl-compatibility.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp-xyz.scm (sbcl-png)[source]: Use it.
2021-09-28gnu: ccache: Update to 4.4.1.Tobias Geerinckx-Rice
* gnu/packages/ccache.scm (ccache): Update to 4.4.1. [source]: Add patch. [arguments]: Remove explicit #t return values from phases. * gnu/packages/patches/ccache-fix-basedir-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-09-27Merge branch 'wip-guix-home'Oleg Pykhalov
2021-09-26gnu: Add patool.Maxim Cournoyer
* gnu/packages/patool.scm: New module. * gnu/local.mk (GNU_SYSTEM_MODULES): Register it.
2021-09-25gnu: Add xgboost.Vinicius Monego
* gnu/packages/machine-learning.scm (xgboost): New variable. * gnu/packages/patches/xgboost-use-system-dmlc-core.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-09-24gnu: Add NNPACK.Ludovic Courtès
* gnu/packages/machine-learning.scm (nnpack): New variable. * gnu/packages/patches/nnpack-system-libraries.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2021-09-23gnu: ungoogled-chromium: Update to 93.0.4577.82-0.3f62dbc.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-ffmpeg-compat.patch, gnu/packages/patches/ungoogled-chromium-system-nspr.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for version 93. (%chromium-version): Set to 93.0.4577.82. (%ungoogled-revision): Set to 93.0.4577.82-1-2-g3f62dbc. (%debian-patches): Remove 'system/nspr.patch'. (%ungoogled-origin): Update source hash. (%guix-patches): Add 'ungoogled-chromium-ffmpeg-compat.patch' and 'ungoogled-chromium-system-nspr.patch'. (ungoogled-chromium-snippet): Remove PYTHON-2 usage. Don't unbundle 'snappy'. (libvpx/chromium): Remove variable. (ungoogled-chromium)[source]: Update hash. [arguments]: Add "is_cfi=false", "use_thin_lto=false", and "blink_enable_generated_code_formatting=false". [native-inputs]: Change CLANG-11 to CLANG-12. Change NODE to NODE-LTS. Add PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB. Remove PYTHON-2. [inputs]: Change LIBVPX/CHROMIUM to LIBVPX.
2021-09-23gnu: LLVM, Clang: Update to 12.0.1.Marius Bakke
* gnu/packages/patches/clang-12-tools-extra-directory.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/llvm.scm (llvm-12, clang-runtime-12): Update to 12.0.1. (clang-12): Likewise. Remove obsolete patch.
2021-09-21gnu: ntfs-3g: Update to 2021.8.22 [security fixes].Leo Famulari
The upstream security advisory is named NTFS3G-SA-2021-0001. Fixes CVE-2021-33285, CVE-2021-35269, CVE-2021-35268, CVE-2021-33289, CVE-2021-33286, CVE-2021-35266, CVE-2021-33287, CVE-2021-35267, CVE-2021-39251, CVE-2021-39252, CVE-2021-39253, CVE-2021-39254, CVE-2021-39255, CVE-2021-39256, CVE-2021-39257, CVE-2021-39258, CVE-2021-39259, CVE-2021-39260, CVE-2021-39261, CVE-2021-39262, CVE-2021-39263. For more information: https://seclists.org/oss-sec/2021/q3/139 * gnu/packages/linux.scm (ntfs-3g): Update to 2021.8.22. [source]: Remove obsolete patch. * gnu/packages/patches/ntfs-3g-CVE-2019-9755.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-09-21gnu: patchutils: Update to 0.4.2.Xinglu Chen
* gnu/packages/patchutils.scm (patchutils): Update to 0.4.2. [source]: Remove patch. [inputs]: Add ‘python’. [arguments]<#:phases>: Remove trailing #t. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-18gnu: mpg321: Fix compiling with gcc 10.Guillaume Le Vaillant
* gnu/packages/patches/mpg321-gcc-10.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mp3.scm (mpg321)[source]: Use it.
2021-09-18gnu: gnunet: Fix libmicrohttpd test case using SSL3.muradm
* gnu/packages/patches/libmicrohttpd-0.9.73-test-ssl3.patch: Patch for failing test case as suggested by libmicrohttpd mailing list * gnu/packages/gnunet.scm (libmicrohttpd): use patch * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-17gnu: cheese: Fix build.Mathieu Othacehe
* gnu/packages/patches/cheese-vala-update.patch: New file. * gnu/local.mk (DIST_PATCH_DATA): Add it. * gnu/packages/gnome.scm (cheese)[source]: Use it.
2021-09-17Merge branch 'master' into core-updates-frozenMarius Bakke
Conflicts: gnu/packages/bioinformatics.scm gnu/packages/chez.scm gnu/packages/docbook.scm gnu/packages/ebook.scm gnu/packages/gnome.scm gnu/packages/linux.scm gnu/packages/networking.scm gnu/packages/python-web.scm gnu/packages/python-xyz.scm gnu/packages/tex.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/dune.scm guix/build-system/go.scm guix/build-system/linux-module.scm guix/packages.scm
2021-09-16gnu: xygrib: Fix finding resources in the data directory.Thiago Jung Bauermann via Guix-patches via
Currently, if you start up XyGrib it will not show icons in the toolbar buttons, translated strings in the UI nor the map in the main view. These are all items stored in the data directory, which XyGrib can’t find. Backport upstream PR 235 (already merged upstream) which makes it use XDG directories correctly. As a bonus, the PR also contains a fix to find libjpeg, so we don’t need the substitution for that anymore. * gnu/packages/patches/xygrib-fix-finding-data.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/geo.scm (xygrib)[source]: Use it. [arguments]<#:configure-flags>: Pass ‘-DGNU_PACKAGE=ON’. [arguments]<#:phases>{patch-directories}: Remove fix to find libjpeg. Remove trailing ‘#t’. [native-search-paths]: Add ‘XDG_DATA_DIRS’. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-09-13home-services: Add Mcron.Andrew Tropin
* gnu/home-services/mcron.scm: New file. * gnu/local.mk: Add this. * doc/guix.texi: Add documentation about Mcron Home Service. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2021-09-11gnu: python-random2: Fix building with python 3.9.Guillaume Le Vaillant
* gnu/packages/patches/python-random2-getrandbits-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-xyz.scm (python-random2)[source]: Use it.
2021-09-10gnu: racket: fix `raco exe` with non-minimal RacketPhilip McGrath
This commit backports an upstream repair for a bug exposed by Guix's change in Racket 8.2 to make the `racket` package a layered/tethered installation that chains to the `racket-minimal` package. When using a layered/tethered installation, the `setup/variant` library would fail to recognize the default Racet variant (CS, 3M, or CGC), leading to confusing failures from `raco exe`, `create-embedding-executable`, and other clients. For further details, see <https://issues.guix.gnu.org/50118> and <https://github.com/racket/racket/issues/3969>. * gnu/packages/patches/racket-minimal-backport-1629887.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/racket.scm (racket-minimal)[source]: Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-09-09gnu: go-github-com-urfave-cli-v2: Fix tests when building with Go 1.17.Sarah Morgensen
* gnu/packages/patches/go-github-com-urfave-cli-v2-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-github-com-urfave-cli-v2)[origin]: Apply it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-09-09gnu: go-github-com-urfave-cli: Fix tests when building with Go 1.17.Sarah Morgensen
* gnu/packages/patches/go-github-com-urfave-cli-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/golang.scm (go-github-com-urfave-cli)[origin]: Apply it. Signed-off-by: Leo Famulari <leo@famulari.name>
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