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path: root/gnu/packages/bioconductor.scm
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2021-03-31Revert "Revert some commits that caused `guix pull` to fail."...This reverts commit 8ec0ca8faff62f19426f22aeb1bd59a8950ca05a. zimoun
2021-03-31gnu: r-absfiltergsea: Move to (gnu packages bioconductor)....* gnu/packages/cran.scm (r-absfiltergsea): Move this variable from here... * gnu/packages/bioconductor.scm (r-absfiltergsea): ...to here. zimoun
2021-03-31gnu: r-bisquerna: Move to (gnu packages bioconductor)....* gnu/packages/cran.scm (r-bisquerna): Move this variable from here... * gnu/packages/bioconductor.scm (r-bisquerna): ...to here. zimoun
2021-03-22gnu: Add r-chromstar....* gnu/packages/bioconductor.scm (r-chromstar): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2021-03-22gnu: Add r-chromstardata....* gnu/packages/bioconductor.scm (r-chromstardata): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Hong Li
2021-03-15Revert some commits that caused `guix pull` to fail....This reverts commits 821e6439212f8e94580674eaaff2ce6752cd3b18 through 8f9fd9b70c7bf166d96a4b1dc8b427f8cdf040b5. Specifically, these commits caused the build failure of guix-package-cache.drv like this: ------ (repl-version 0 1 1) Generating package cache for '/gnu/store/vyz7q26kxxd4z70m24rkkqqhaizdla7g-profile'... (exception unbound-variable (value #f) (value "Unbound variable: ~S") (value (r-biobase)) (value #f)) Leo Famulari
2021-03-15gnu: r-biocparallel: Build reproducibly....* gnu/packages/bioconductor.scm (r-biocparallel)[arguments]: Add phase "make-reproducible". Ricardo Wurmus
2021-03-15gnu: r-delayedarray: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-delayedarray): Move from here... * gnu/packages/bioconductor.scm (r-delayedarray): ...to here. zimoun
2021-03-15gnu: r-rsamtools: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-rsamtools): Move from here... * gnu/packages/bioconductor.scm (r-rsamtools): ...to here. zimoun
2021-03-15gnu: r-biostrings: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biostrings): Move from here... * gnu/packages/bioconductor.scm (r-biostrings): ...to here. zimoun
2021-03-15gnu: r-biocparallel: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocparallel): Move from here... * gnu/packages/bioconductor.scm (r-biocparallel): ...to here. zimoun
2021-03-15gnu: r-biomart: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biomart): Move from here... * gnu/packages/bioconductor.scm (r-biomart): ...to here. zimoun
2021-03-15gnu: r-annotationdbi: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here... * gnu/packages/bioconductor.scm (r-annotationdbi): ...to here. zimoun
2021-03-15gnu: r-biobase: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biobase): Move from here... * gnu/packages/bioconductor.scm (r-biobase): ...to here. zimoun
2021-03-15gnu: r-genomicranges: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomicranges): Move from here... * gnu/packages/bioconductor.scm (r-genomicranges): ...to here. zimoun
2021-03-15gnu: r-xvector: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-xvector): Move from here... * gnu/packages/bioconductor.scm (r-xvector): ...to here. zimoun
2021-03-15gnu: r-limma: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-limma): Move from here... * gnu/packages/bioconductor.scm (r-limma): ...to here. zimoun
2021-03-15gnu: r-scater: Update to 1.18.6....* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.6. Ricardo Wurmus
2021-03-15gnu: r-cytoml: Update to 2.2.2....* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.2.2. [inputs]: Add zlib. Ricardo Wurmus
2021-03-15gnu: r-diffbind: Update to 3.0.14....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.14. Ricardo Wurmus
2021-03-15gnu: r-reportingtools: Update to 2.30.2....* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.30.2. Ricardo Wurmus
2021-03-15gnu: r-genomeinfodb: Update to 1.26.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.4. Ricardo Wurmus
2021-03-15gnu: r-deseq2: Update to 1.30.1....* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.30.1. Ricardo Wurmus
2021-03-15gnu: r-variantannotation: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-variantannotation): Move from here... * gnu/packages/bioconductor.scm (r-variantannotation): ...to here. zimoun
2021-03-15gnu: r-edger: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-edger): Move from here... * gnu/packages/bioconductor.scm (r-edger): ...to here. zimoun
2021-03-15gnu: r-genomeinfodb: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodb): ...to here. zimoun
2021-03-15gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genomeinfodbdata): Move from here... * gnu/packages/bioconductor.scm (r-genomeinfodbdata): ...to here. [source]: Use 'bioconductor-uri'. zimoun
2021-03-15gnu: r-iranges: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-iranges): Move from here... * gnu/packages/bioconductor.scm (r-iranges): ...to here. zimoun
2021-03-15gnu: r-s4vectors: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-s4vectors): Move from here... * gnu/packages/bioconductor.scm (r-s4vectors): ...to here. zimoun
2021-03-15gnu: r-bioccheck: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-bioccheck): Move from here... * gnu/packages/bioconductor.scm (r-bioccheck): ...to here. zimoun
2021-03-15gnu: r-grohmm: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-grohmm): Move from here... * gnu/packages/bioconductor.scm (r-grohmm): ...to here. zimoun
2021-03-15gnu: r-biocstyle: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocstyle): Move from here... * gnu/packages/bioconductor.scm (r-biocstyle): ...to here. zimoun
2021-03-15gnu: r-biocviews: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-biocviews): Move from here... * gnu/packages/bioconductor.scm (r-biocviews): ...to here. zimoun
2021-03-15gnu: r-gkmsvm: Move back to (gnu packages cran)....* gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here... * gnu/packages/cran.scm (r-gkmsvm): ...to here. Ricardo Wurmus
2021-03-12gnu: r-systempiper: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-systempiper): Move from here... * gnu/packages/bioconductor.scm (r-systempiper): ...to here. zimoun
2021-03-12gnu: r-shortread: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-shortread): Move from here... * gnu/packages/bioconductor.scm (r-shortread): ...to here. zimoun
2021-03-12gnu: r-gostats: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-gostats): Move from here... * gnu/packages/bioconductor.scm (r-gostats): ...to here. zimoun
2021-03-12gnu: r-category: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-category): Move from here... * gnu/packages/bioconductor.scm (r-category): ...to here. zimoun
2021-03-12gnu: r-gseabase: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-gseabase): Move from here... * gnu/packages/bioconductor.scm (r-gseabase): ...to here. zimoun
2021-03-12gnu: r-rbgl: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-rbgl): Move from here... * gnu/packages/bioconductor.scm (r-rbgl): ...to here. zimoun
2021-03-12gnu: r-annotationforge: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-annotationforge): Move from here... * gnu/packages/bioconductor.scm (r-annotationforge): ...to here. zimoun
2021-03-12gnu: r-dexseq: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-dexseq): Move from here... * gnu/packages/bioconductor.scm (r-dexseq): ...to here. zimoun
2021-03-12gnu: r-deseq2: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-deseq2): Move from here... * gnu/packages/bioconductor.scm (r-deseq2): ...to here. zimoun
2021-03-12gnu: r-genefilter: Move to (gnu packages bioconductor)....* gnu/packages/bioinformatics.scm (r-genefilter): Move from here... * gnu/packages/bioconductor.scm (r-genefilter): ...to here. zimoun
2021-03-12gnu: r-bioassayr: Update home page....* gnu/packages/bioconductor.scm (r-bioassayr)[home-page]: Follow permanent redirect. Ricardo Wurmus
2021-03-12gnu: r-bioassayr: Update to 1.28.2....* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.2. zimoun
2021-03-12gnu: r-chemminer: Update to 3.42.2....* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.2. zimoun
2021-03-12gnu: r-circrnaprofiler: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-circrnaprofiler): Update to 1.4.2. zimoun
2021-03-09gnu: r-wgcna: Update to 1.70-3....* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.70-3. Ricardo Wurmus
2021-03-05gnu: Add r-circrnaprofiler....* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable. Mădălin Ionel Patrașcu
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