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2022-10-15gnu: Add r-macrophage.Mădălin Ionel Patrașcu
X-Debbugs-Cc: rekado@elephly.net * gnu/packages/bioconductor.scm (r-macrophage): New variable.
2022-10-06gnu: Add r-dada2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dada2): New variable.
2022-10-03gnu: r-tximeta: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.1.
2022-10-03gnu: r-bionero: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.2. [propagated-inputs]: Remove r-deseq2 and r-ggpubr; add r-ggrepel and r-patchwork.
2022-10-03gnu: r-biodb: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.4.2.
2022-10-03gnu: r-biocdockermanager: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.8.1.
2022-10-03gnu: r-basilisk: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.8.1.
2022-10-03gnu: r-bgeecall: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.12.2.
2022-10-03gnu: r-pathview: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.36.1.
2022-10-03gnu: r-delayedmatrixstats: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.18.1.
2022-10-03gnu: r-scran: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.24.1.
2022-10-03gnu: r-scuttle: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.6.3.
2022-10-03gnu: r-hdf5array: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.24.2.
2022-10-03gnu: r-biocpkgtools: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.14.1.
2022-10-03gnu: r-biocviews: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocviews): Update to 1.64.1.
2022-10-03gnu: r-bioccheck: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.32.1.
2022-10-03gnu: r-cytoml: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.8.1.
2022-10-03gnu: r-opencyto: Update to 2.8.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-opencyto): Update to 2.8.4.
2022-10-03gnu: r-flowstats: Update to 4.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowstats): Update to 4.8.2.
2022-10-03gnu: r-flowviz: Update to 1.60.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowviz): Update to 1.60.2.
2022-10-03gnu: r-ggcyto: Update to 1.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.24.1.
2022-10-03gnu: r-ncdfflow: Update to 2.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.42.1.
2022-10-03gnu: r-rsubread: Update to 2.10.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.5.
2022-10-03gnu: r-rgadem: Update to 2.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.44.1.
2022-10-03gnu: r-enrichplot: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.16.2.
2022-10-03gnu: r-dose: Update to 3.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.22.1.
2022-10-03gnu: r-residualmatrix: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-residualmatrix): Update to 1.6.1.
2022-10-03gnu: r-ggtree: Update to 3.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.4.4.
2022-10-03gnu: r-treeio: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.20.2.
2022-10-03gnu: r-scaledmatrix: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scaledmatrix): Update to 1.4.1.
2022-10-03gnu: r-diffbind: Update to 3.6.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.6.4.
2022-10-03gnu: r-zellkonverter: Update to 1.6.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.5.
2022-10-03gnu: r-limma: Update to 3.52.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.4.
2022-10-03gnu: r-genomicfeatures: Update to 1.48.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.4.
2022-10-03gnu: r-genomeinfodb: Update to 1.32.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.32.4.
2022-10-03gnu: r-gage: Update to 2.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gage): Update to 2.46.1.
2022-10-03gnu: r-complexheatmap: Update to 2.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-complexheatmap): Update to 2.12.1.
2022-10-03gnu: r-chipseeker: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.32.1. [propagated-inputs]: Add r-ggvenndiagram.
2022-10-03gnu: r-biostrings: Update to 2.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.1.
2022-10-03gnu: r-annotationforge: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationforge): Update to 1.38.1.
2022-10-03gnu: r-dearseq: Update to 1.8.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.4.
2022-09-20gnu: r-activedriverwgs: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activedriverwgs): Update to 1.2.0.
2022-09-20gnu: r-htscluster: Update to 2.0.10.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-htscluster): Update to 2.0.10.
2022-09-20gnu: r-perfmeas: Update to 1.2.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-perfmeas): Update to 1.2.5.
2022-09-20gnu: r-valr: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.5.
2022-09-15gnu: Add r-omicade4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omicade4): New variable.
2022-09-15gnu: Add r-made4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-made4): New variable.
2022-09-10gnu: Add comments to the bottom of a few package modules.Christopher Baines
This will hopefully discourage patches which add new packages to the bottom of files, as this increases the likelihood of conflicts when applying patches. If there are more specific ways that packages should be arranged in specific modules, this message can be updated accordingly. * gnu/packages/bioconductor.scm: Add comment discouraging adding packages to the bottom of the file. * gnu/packages/bioinformatics.scm: ditto. * gnu/packages/cran.scm: ditto. * gnu/packages/crates-io.scm: ditto. * gnu/packages/emacs-xyz.scm: ditto. * gnu/packages/golang.scm: ditto. * gnu/packages/guile-xyz.scm: ditto. * gnu/packages/haskell-xyz.scm: ditto. * gnu/packages/java.scm: ditto. * gnu/packages/julia-xyz.scm: ditto. * gnu/packages/lisp-xyz.scm: ditto. * gnu/packages/ocaml.scm: ditto. * gnu/packages/perl.scm: ditto. * gnu/packages/python-science.scm: ditto. * gnu/packages/python-xyz.scm: ditto. * gnu/packages/ruby.scm: ditto. * gnu/packages/tex.scm: ditto.
2022-09-06gnu: r-edger: Update to 3.38.4.Efraim Flashner
* gnu/packages/bioconductor.scm (r-edger): Update to 3.38.4. [propagated-inputs]: Remove r-statmod.
2022-09-05gnu: r-genomicalignments: Update to 1.32.1.Efraim Flashner
* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.32.1.
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