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2022-06-12gnu: r-rsubread: Update to 2.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.2.
2022-06-12gnu: r-clusterprofiler: Update to 4.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.2.
2022-06-12gnu: r-monocle: Update to 2.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-monocle): Update to 2.24.1.
2022-06-12gnu: r-chippeakanno: Update to 3.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.30.1.
2022-06-12gnu: r-zellkonverter: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.2.
2022-06-12gnu: r-keggrest: Update to 1.36.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-keggrest): Update to 1.36.2.
2022-06-12gnu: r-genomicfeatures: Update to 1.48.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.48.3.
2022-06-12gnu: r-biocparallel: Update to 1.30.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.30.3. [propagated-inputs]: Add r-codetools.
2022-06-12gnu: r-deepsnv: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.1.
2022-05-30gnu: r-batchelor: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.1.
2022-05-29Merge branch 'wip-r'Ricardo Wurmus
2022-05-29gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Update to 1.3.993.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked): Update to 1.3.993.
2022-05-29gnu: Add r-scmap.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-scmap): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2022-05-28gnu: Add r-msdata.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msdata): New variable.
2022-05-28gnu: r-tcgabiolinksgui-data: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): Update to 1.16.0.
2022-05-28gnu: r-curatedtcgadata: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-curatedtcgadata): Update to 1.18.0. [native-inputs]: Add r-knitr.
2022-05-28gnu: r-gagedata: Update to 2.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gagedata): Update to 2.34.0.
2022-05-28gnu: r-affydata: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affydata): Update to 1.44.0.
2022-05-28gnu: r-all: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-all): Update to 1.38.0.
2022-05-28gnu: r-hsmmsinglecell: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hsmmsinglecell): Update to 1.16.0.
2022-05-28gnu: r-pasilla: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pasilla): Update to 1.24.0. [propagated-inputs]: Remove r-biocstyle, r-knitr, and r-rmarkdown. [native-inputs]: Add r-knitr.
2022-05-28gnu: r-genomationdata: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomationdata): Update to 1.28.0.
2022-05-28gnu: r-genelendatabase: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genelendatabase): Update to 1.32.0.
2022-05-28gnu: r-copyhelper: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-copyhelper): Update to 1.28.0.
2022-05-28gnu: r-chromstardata: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromstardata): Update to 1.22.0.
2022-05-28gnu: r-celldex: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-celldex): Update to 1.6.0.
2022-05-28gnu: r-biscuiteerdata: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biscuiteerdata): Update to 1.10.0.
2022-05-28gnu: r-arrmdata: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrmdata): Update to 1.32.0.
2022-05-28gnu: r-aneufinderdata: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aneufinderdata): Update to 1.24.0.
2022-05-28gnu: r-adductdata: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adductdata): Update to 1.12.0.
2022-05-28gnu: r-pfam-db: Update to 3.15.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pfam-db): Update to 3.15.0.
2022-05-28gnu: r-txdb-hsapiens-ucsc-hg38-knowngene: Update to 3.15.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-txdb-hsapiens-ucsc-hg38-knowngene): Update to 3.15.0. [propagated-inputs]: Add r-annotationdbi.
2022-05-28gnu: r-bsgenome-hsapiens-ucsc-hg38: Update to 1.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38): Update to 1.4.4.
2022-05-28gnu: r-bsgenome-hsapiens-ucsc-hg19: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19): Update to 1.4.3.
2022-05-28gnu: r-leidenbase: Update to 0.1.9.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-leidenbase): Update to 0.1.9.
2022-05-28gnu: r-phyloseq: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.40.0.
2022-05-28gnu: r-tximeta: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.14.0.
2022-05-28gnu: r-tricycle: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.4.0. [propagated-inputs]: Add r-ggnewscale.
2022-05-28gnu: r-tcgabiolinks: Update to 2.24.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.1.
2022-05-28gnu: r-biscuiteer: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.10.0. [propagated-inputs]: Add r-iranges.
2022-05-28gnu: r-omnipathr: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.4.0. [propagated-inputs]: Add r-withr.
2022-05-28gnu: r-dmrseq: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.16.0.
2022-05-28gnu: r-bsseq: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.32.0.
2022-05-28gnu: r-biotmle: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.20.0.
2022-05-28gnu: r-biotip: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.10.0. [propagated-inputs]: Remove r-hmisc; add r-scran.
2022-05-28gnu: r-bioqc: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.24.0.
2022-05-28gnu: r-bionetstat: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.0.
2022-05-28gnu: r-bionet: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.56.0.
2022-05-28gnu: r-bionero: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.4.0.
2022-05-28gnu: r-biomvrcns: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.36.0.
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