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2020-03-08gnu: r-atacseqqc: Update to 1.10.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.3. [native-inputs]: Add r-knitr.
2020-03-07gnu: r-multiassayexperiment: Update to 1.12.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.4.
2020-03-07gnu: r-depecher: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.2. [native-inputs]: Add r-knitr.
2020-03-07gnu: r-xcms: Update to 3.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.8.2.
2020-03-07gnu: r-yamss: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.12.1.
2020-03-02gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Update to 3.10.0.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene): Update to 3.10.0.
2020-03-01gnu: r-multiassayexperiment: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.3.
2020-03-01gnu: r-cicero: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.2.
2020-03-01gnu: r-mlinterfaces: Update to 1.66.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.4.
2020-03-01gnu: r-biocneighbors: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): Update to 1.4.2.
2020-03-01gnu: r-chippeakanno: Update to 3.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.20.1.
2020-03-01gnu: r-gkmsvm: Update to 0.80.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.80.0. [propagated-inputs]: Remove r-biocgenerics, r-biostrings, r-genomeinfodb, r-iranges, r-rtracklayer, and r-s4vectors.
2020-02-25gnu: Add r-bsgenome-hsapiens-ncbi-grch38.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ncbi-grch38): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-02-22gnu: r-genomicinteractions: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.20.1.
2020-02-22gnu: r-cicero: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.4.1. [propagated-inputs]: Add r-tidyr.
2020-02-22gnu: r-ggm: Move to (gnu packages bioconductor).Ricardo Wurmus
* gnu/packages/cran.scm (r-ggm): Move this variable from here... * gnu/packages/bioconductor.scm (r-ggm): ...to here.
2020-02-19gnu: r-depecher: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
2020-02-19gnu: r-mixomics: Update to 6.10.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
2020-02-19gnu: r-rsubread: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
2020-02-19gnu: r-atacseqqc: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
2020-02-19gnu: r-heatplus: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
2020-02-19gnu: r-biocsingular: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
2020-02-19gnu: r-inspect: Update to 1.16.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
2020-02-19gnu: r-nmf: Update to 0.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nmf): Update to 0.22.0. [propagated-inputs]: Add r-biobase and r-biocmanager.
2020-02-19gnu: r-nmf: Move to (gnu packages bioconductor).Ricardo Wurmus
* gnu/packages/statistics.scm (r-nmf): Move this variable from here... * gnu/packages/bioconductor.scm (r-nmf): ...to here.
2020-02-11gnu: r-lpsymphony: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-lpsymphony)[home-page]: Use HTTPS.
2020-02-11gnu: r-codedepends: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-codedepends)[home-page]: Use HTTPS.
2020-02-11gnu: r-multiassayexperiment: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/bioconductor.scm (r-multiassayexperiment)[home-page]: Use HTTPS.
2020-01-27gnu: Add r-deconstructsigs.Roel Janssen
* gnu/packages/bioconductor.scm (r-deconstructsigs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-01-27gnu: r-multiassayexperiment: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.2.
2020-01-27gnu: r-ropls: Update to 1.18.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.8.
2020-01-27gnu: r-destiny: Update to 3.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.1.
2020-01-27gnu: r-metap: Update to 1.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
2020-01-24gnu: r-biocset: Fix spelling of "ability".Vagrant Cascadian
* gnu/packages/bioconductor (r-biocset)[description]: Fix typo.
2020-01-21gnu: Use HTTPS for bioconductor.org.Tobias Geerinckx-Rice
* gnu/packages/bioinformatics.scm (r-homo-sapiens)[source]: Use HTTPS. * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm9-masked, r-cghcall, r-diffbind, r-cghbase, r-ripseeker, r-chippeakanno, r-qdnaseq, r-marray, r-multtest)[home-page]: Likewise. * gnu/packages/graph.scm (r-rgraphviz)[home-page]: Likewise.
2020-01-16gnu: r-variancepartition: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16gnu: r-flowworkspace: Update to 3.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16gnu: r-ropls: Update to 1.18.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16gnu: r-mlinterfaces: Update to 1.66.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2. [propagated-inputs]: Remove r-rda.
2020-01-16gnu: r-clusterprofiler: Update to 3.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16gnu: r-inspect: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16gnu: r-regioner: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16gnu: r-affycoretools: Update to 1.58.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4. [propagated-inputs]: Add r-glimma.
2019-12-27gnu: r-inspect: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.1. [propagated-inputs]: Add r-gdata.
2019-12-27gnu: r-multiassayexperiment: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.1.
2019-12-27gnu: r-rgadem: Update to 2.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.1. [propagated-inputs]: Add r-genomicranges.
2019-12-27gnu: r-clusterprofiler: Update to 3.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.2.
2019-12-27gnu: r-enrichplot: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.1.
2019-12-27gnu: r-biocsingular: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.1.
2019-12-27gnu: r-affycoretools: Update to 1.58.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.3.
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