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2023-05-09gnu: r-edger: Update to 3.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 3.42.2.
2023-05-09gnu: r-deseq2: Update to 1.40.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.40.1.
2023-05-09gnu: r-biocparallel: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.34.1.
2023-05-09gnu: r-annotationdbi: Update to 1.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.62.1.
2023-05-09gnu: r-densvis: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-densvis): Update to 1.10.1.
2023-05-09gnu: r-delayedarray: Update to 0.26.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.26.2. [propagated-inputs]: Add r-s4arrays.
2023-05-09gnu: r-bandits: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bandits): Update to 1.16.1.
2023-05-09gnu: r-bambu: Update to 3.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bambu): Update to 3.2.2.
2023-05-09gnu: r-amplican: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.22.1. [propagated-inputs]: Remove r-clustercrit; add r-cluster.
2023-05-09gnu: r-affyplm: Update to 1.76.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.1.
2023-05-09gnu: Add r-s4arrays.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4arrays): New variable.
2023-05-09gnu: r-ggpicrust2: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
2023-05-09gnu: r-biomartr: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
2023-05-08gnu: Add r-multibac.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-multibac): New variable.
2023-05-02gnu: Add r-ggpicrust2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggpicrust2): New variable.
2023-05-02gnu: Add r-microbiomestat.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-microbiomestat): New variable.
2023-05-02gnu: Add r-lefser.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lefser): New variable.
2023-04-29gnu: r-motifstack: Update to 1.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.44.1.
2023-04-29gnu: r-chippeakanno: Update to 3.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.34.1.
2023-04-29gnu: r-hpar: Avoid internet access.Ricardo Wurmus
ExperimentHub::createHubAccessors needs internet access. When R tests if the package can be loaded it runs zzz.R, which contains the call to createHubAccessors. We set the variable GUIX_BUILD to conditionally disable this call. * gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases: 'set-HOME and 'avoid-internet-access.
2023-04-29gnu: r-phyloseq: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
2023-04-29gnu: r-tximeta: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
2023-04-29gnu: r-tricycle: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
2023-04-29gnu: r-biscuiteer: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
2023-04-29gnu: r-omnipathr: Update to 3.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
2023-04-29gnu: r-omicade4: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
2023-04-29gnu: r-dmrseq: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
2023-04-29gnu: r-dada2: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
2023-04-29gnu: r-bsseq: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
2023-04-29gnu: r-biotmle: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
2023-04-29gnu: r-biotip: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
2023-04-29gnu: r-bioqc: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
2023-04-29gnu: r-bionet: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
2023-04-29gnu: r-bionero: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
2023-04-29gnu: r-biomvcclass: Update to 1.68.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
2023-04-29gnu: r-mvcclass: Update to 1.74.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
2023-04-29gnu: r-biomformat: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
2023-04-29gnu: r-biodb: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
2023-04-29gnu: r-biocdockermanager: Update to 1.11.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
2023-04-29gnu: r-biocthis: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
2023-04-29gnu: r-basilisk: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
2023-04-29gnu: r-basilisk-utils: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
2023-04-29gnu: r-dir-expiry: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
2023-04-29gnu: r-genetclassifier: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
2023-04-29gnu: r-minet: Update to 3.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
2023-04-29gnu: r-biobtreer: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
2023-04-29gnu: r-bgeedb: Update to 2.26.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
2023-04-29gnu: r-bgeecall: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
2023-04-29gnu: r-beclear: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
2023-04-29gnu: r-megadepth: Update to 1.9.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.