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2016-09-12gnu: r-biocparallel: Update to 1.6.6.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.6. Ricardo Wurmus
2016-09-12gnu: r-genomicranges: Update to 1.24.3.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.3. Ricardo Wurmus
2016-09-12gnu: r-limma: Update to 3.28.21.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.21. Ricardo Wurmus
2016-09-12gnu: r-variantannotation: Update to 1.18.7.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.7. Ricardo Wurmus
2016-09-12gnu: r-genomeinfodb: Update to 1.8.7.•••* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.7. Ricardo Wurmus
2016-09-12gnu: r-seqinr: Update to 3.3-1.•••* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.3-1. [propagated-inputs]: Add "r-segmented". Ricardo Wurmus
2016-09-12gnu: r-s4vectors: Update to 0.10.3.•••* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.3. Ricardo Wurmus
2016-09-12gnu: r-acsnminer: Update to 0.16.8.25.•••* gnu/packages/bioinformatics.scm (r-acsnminer): Update to 0.16.8.25. Ricardo Wurmus
2016-09-12gnu: r-vegan: Update to 2.4-1.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-1. Ricardo Wurmus
2016-09-10gnu: Add mash.•••* gnu/packages/bioinformatics.scm (mash): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Marius Bakke
2016-09-10gnu: bamm: Update to 1.7.3.•••* gnu/packages/bioinformatics.scm (bamm): Update to 1.7.3. Ben Woodcroft
2016-09-04gnu: infernal: Limit to i686 and x86_64 systems.•••* gnu/packages/bioinformatics.scm (infernal)[supported-systems]: The package requires VMX or SSE capability for parallel instructions, so limit it to those supported systems. Efraim Flashner
2016-09-02gnu: Add Infernal.•••* gnu/packages/bioinformatics.scm (infernal): New variable. Ricardo Wurmus
2016-08-31gnu: subread: Update to 1.5.1.•••* gnu/packages/bioinformatics.scm (subread): Update to 1.5.1. Ricardo Wurmus
2016-08-31gnu: aragorn: Update to 1.2.37.•••* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.37. Ben Woodcroft
2016-08-30gnu: diamond: Update to 0.8.20.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.20. Ben Woodcroft
2016-08-22gnu: Add r-bamsignals.•••* gnu/packages/bioinformatics.scm (r-bamsignals): New variable. Ricardo Wurmus
2016-08-22gnu: Add r-rhtslib.•••* gnu/packages/bioinformatics.scm (r-rhtslib): New variable. Ricardo Wurmus
2016-08-17gnu: clipper: Update to 1.1.•••* gnu/packages/bioinformatics.scm (clipper): Update to 1.1. [source]: Delete pre-built libraries. [inputs]: Add python2-pandas. Ricardo Wurmus
2016-08-17gnu: Add minced.•••* gnu/packages/bioinformatics.scm (minced): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com> Marius Bakke
2016-08-16gnu: mafft: Update to 7.305.•••* gnu/packages/bioinformatics.scm (mafft): Update to 7.305. [inputs]: Add ruby. Ben Woodcroft
2016-08-15gnu: mafft: Update to 7.304.•••* gnu/packages/bioinformatics.scm (mafft): Update to 7.304. Ben Woodcroft
2016-08-15gnu: mafft: Wrap programs.•••* gnu/packages/bioinformatics.scm (mafft)[arguments]: Add 'wrap-programs' phase. [propagated-inputs]: Move coreutils from here ... [inputs]: ... to here. Ben Woodcroft
2016-08-15gnu: mafft: Update to 7.300.•••* gnu/packages/bioinformatics.scm (mafft): Update to 7.300. Ben Woodcroft
2016-08-14gnu: Add bamm.•••* gnu/packages/bioinformatics.scm (bamm): New variable. Ben Woodcroft
2016-08-11gnu: snap-aligner: Limit to x86_64.•••* gnu/packages/bioinformatics.scm (snap-aligner)[supported-systems]: Add note explaining why we build for x86_64 only. Efraim Flashner
2016-08-11gnu: diamond: Update to 0.8.18.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.18. Ben Woodcroft
2016-08-08gnu: Add roary.•••* gnu/packages/bioinformatics.scm (roary): New variable. Ben Woodcroft
2016-08-08gnu: Add raxml.•••* gnu/packages/bioinformatics.scm (raxml): New variable. Ben Woodcroft
2016-08-08gnu: Add prank.•••* gnu/packages/bioinformatics.scm (prank): New variable. Ben Woodcroft
2016-08-08gnu: Add exonerate.•••* gnu/packages/bioinformatics.scm (exonerate): New variable. Ben Woodcroft
2016-08-08gnu: Add bppsuite.•••* gnu/packages/bioinformatics.scm (bppsuite): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-popgen.•••* gnu/packages/bioinformatics.scm (bpp-popgen): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-phyl.•••* gnu/packages/bioinformatics.scm (bpp-phyl): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-seq.•••* gnu/packages/bioinformatics.scm (bpp-seq): New variable. Ben Woodcroft
2016-08-08gnu: Add bpp-core.•••* gnu/packages/bioinformatics.scm (bpp-core): New variable. Ben Woodcroft
2016-08-06gnu: Add python-biom-format.•••* gnu/packages/bioinformatics.scm (python-biom-format, python2-biom-format): New variables. Ben Woodcroft
2016-08-03gnu: Add discrover.•••* gnu/packages/bioinformatics.scm (discrover): New variable. Ricardo Wurmus
2016-08-03gnu: fxtract: Restrict to x86_64-linux.•••* gnu/packages/bioinformatics.scm (fxtract)[supported-systems]: Restrict to x86_64-linux. Ben Woodcroft
2016-08-02gnu: r-variantannotation: Update to 1.18.6.•••* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.18.6. Ricardo Wurmus
2016-08-02gnu: r-genomationdata: Update to 1.4.2.•••* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.4.2. Ricardo Wurmus
2016-07-30gnu: diamond: Update to 0.8.17.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.17. Ben Woodcroft
2016-07-28gnu: r-genomicfeatures: Update to 1.24.5.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.24.5. Ben Woodcroft
2016-07-28gnu: r-bsgenome: Update to 1.40.1.•••* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.40.1. Ben Woodcroft
2016-07-28gnu: r-iranges: Update to 2.6.1.•••* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.6.1. Ben Woodcroft
2016-07-28gnu: r-limma: Update to 3.28.17.•••* gnu/packages/bioinformatics.scm (r-limma): Update to 3.28.17. Ben Woodcroft
2016-07-28gnu: r-xvector: Update to 0.12.1.•••* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.12.1. Ben Woodcroft
2016-07-28gnu: r-genomicranges: Update to 1.24.2.•••* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.24.2. Ben Woodcroft
2016-07-28gnu: r-annotationdbi: Update to 1.34.4.•••* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4. Ben Woodcroft
2016-07-28gnu: r-biocparallel: Update to 1.6.3.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3. Ben Woodcroft
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