summaryrefslogtreecommitdiff
path: root/gnu/packages/bioinformatics.scm
AgeCommit message (Expand)Author
2018-03-20gnu: pigx-bsseq: Update to 0.0.8....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8. Ricardo Wurmus
2018-03-20gnu: pigx-rnaseq: Update to 0.0.3....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3. [inputs]: Add gzip. Ricardo Wurmus
2018-03-19gnu: pigx-bsseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep. Ricardo Wurmus
2018-03-19gnu: bismark: Fix references to gunzip....* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Update to 0.0.3....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl. Ricardo Wurmus
2018-03-19gnu: pigx: Update to 0.0.2....* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2. Ricardo Wurmus
2018-03-19gnu: r-rcas: Use ghc-pandoc-citeproc-with-pandoc-1....* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-chipseq: Update to 0.0.8....* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8. [inputs]: Add python-magic, python-xlrd, and trim-galore. [arguments]: Disable tests. Ricardo Wurmus
2018-03-19gnu: pigx-scrnaseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-bsseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-chipseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-19gnu: pigx-rnaseq: Use pandoc-1....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc with ghc-pandoc-1, and ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1. Ricardo Wurmus
2018-03-16gnu: Add pigx....* gnu/packages/bioinformatics.scm (pigx): New variable. Ricardo Wurmus
2018-03-16gnu: pigx-rnaseq: Disable memory hungry test....* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to disable a memory hungry test. Ricardo Wurmus
2018-03-16gnu: Add pigx-scrnaseq....* gnu/packages/bioinformatics.scm (pigx-scrnaseq): New variable. Ricardo Wurmus
2018-03-16gnu: kentutils: Build with mariadb....* gnu/packages/bioinformatics.scm (kentutils)[inputs]: Replace mysql with mariadb. Ricardo Wurmus
2018-03-15gnu: Add Diversitree....* gnu/packages/bioinformatics.scm (r-diversitree): New variable. Leo Famulari
2018-03-11gnu: Add pigx-bsseq....* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable. Ricardo Wurmus
2018-03-11gnu: Add pigx-chipseq....* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable. Ricardo Wurmus
2018-03-09gnu: r-rhdf5lib: Make build reproducible....* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp and host system kernel version. Ricardo Wurmus
2018-03-08gnu: Add r-phangorn....* gnu/packages/bioinformatics.scm (r-phangorn): New variable. Ricardo Wurmus
2018-03-08gnu: r-ape: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-ape): Move from here... * gnu/packages/cran.scm (r-ape): ...to here. Ricardo Wurmus
2018-03-08gnu: r-dropbead: Update to 0-2.d746c6f....* gnu/packages/bioinformatics.scm (r-dropbead): Update to 0-2.d746c6f. Ricardo Wurmus
2018-03-07gnu: Add pigx-rnaseq....* gnu/packages/bioinformatics.scm (pigx-rnaseq): New variable. Ricardo Wurmus
2018-03-06gnu: samtools: Update to 1.7....* gnu/packages/bioinformatics.scm (samtools): Update to 1.7. Ricardo Wurmus
2018-03-06gnu: htslib: Update to 1.7....* gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field. Ricardo Wurmus
2018-03-06gnu: r-rhdf5: Make build reproducible....* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file. Ricardo Wurmus
2018-03-04gnu: piranha: Declare a source file-name....* gnu/packages/bioinformatics.scm (piranha)[source]: Declare a source file-name. Efraim Flashner
2018-03-04gnu: libdivsufsort: Declare a source file-name....* gnu/packages/bioinformatics.scm (libdivsufsort)[source]: Declare a source file-name. Efraim Flashner
2018-03-04gnu: seek: Declare a source file-name....* gnu/packages/bioinformatics.scm (seek)[source]: Declare a source file-name. Efraim Flashner
2018-03-04gnu: r-dropbead: Declare a source file-name....* gnu/packages/bioinformatics.scm (r-dropbead)[source]: Declare a source file-name. Efraim Flashner
2018-03-03gnu: Add dropseq-tools....* gnu/packages/bioinformatics.scm (dropseq-tools): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-picard-2.10.3....* gnu/packages/bioinformatics.scm (java-picard-2.10.3): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-htsjdk-2.10.1....* gnu/packages/bioinformatics.scm (java-htsjdk-2.10.1): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-htsjdk-latest....* gnu/packages/bioinformatics.scm (java-htsjdk-latest): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-alignment-4.0....* gnu/packages/bioinformatics.scm (java-biojava-alignment-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-phylo-4.0....* gnu/packages/bioinformatics.scm (java-biojava-phylo-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-core-4.0....* gnu/packages/bioinformatics.scm (java-biojava-core-4.0): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-alignment....* gnu/packages/bioinformatics.scm (java-biojava-alignment): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-phylo....* gnu/packages/bioinformatics.scm (java-biojava-phylo): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-forester-1.005....* gnu/packages/bioinformatics.scm (java-forester-1.005): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-forester....* gnu/packages/bioinformatics.scm (java-forester): New variable. Ricardo Wurmus
2018-03-03gnu: Add java-biojava-core....* gnu/packages/bioinformatics.scm (java-biojava-core): New variable. Ricardo Wurmus
2018-03-03gnu: Add fastqc....* gnu/packages/bioinformatics.scm (fastqc): New variable. Ricardo Wurmus
2018-03-02gnu: cutadapt: Update to 1.16....* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest. Ricardo Wurmus
2018-03-01gnu: r-scran: Update to 1.6.8....* gnu/packages/bioinformatics.scm (r-scran): Update to 1.6.8. Ricardo Wurmus
2018-03-01gnu: r-wgcna: Update to 1.63....* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.63. Ricardo Wurmus
2018-03-01gnu: r-topgo: Update to 2.30.1....* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.30.1. Ricardo Wurmus
2018-03-01gnu: r-genomicranges: Update to 1.30.3....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.30.3. Ricardo Wurmus
2018-03-01gnu: r-limma: Update to 3.34.9....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.9. Ricardo Wurmus
generated by cgit v1.2.3 (git 2.46.2) at 2024-11-11 11:46:13 +0000