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path: root/gnu/packages/bioinformatics.scm
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2020-06-13gnu: r-chipseq: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.38.0. Ricardo Wurmus
2020-06-13gnu: r-annotationfilter: Update to 1.12.0....* gnu/packages/bioinformatics.scm (r-annotationfilter): Update to 1.12.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-rhdf5: Update to 2.32.0....* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.32.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-tximport: Update to 1.16.1....* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.16.1. Ricardo Wurmus
2020-06-13gnu: r-mutationalpatterns: Update to 2.0.0....* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 2.0.0. Ricardo Wurmus
2020-06-13gnu: r-rcas: Update to 1.14.0....* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.14.0. [propagated-inputs]: Remove r-annotationdbi, r-biomart, r-dbi, r-knitr, r-motifrg, r-org-hs-eg-db, and r-topgo; add r-bsgenome, r-gprofiler2, r-iranges, and r-ranger. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-bamsignals: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-rhtslib: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-zlibbioc: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.34.0. Ricardo Wurmus
2020-06-13gnu: r-motifrg: Update to 1.31.0....* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.31.0. Ricardo Wurmus
2020-06-13gnu: r-seqlogo: Update to 1.54.3....* gnu/packages/bioinformatics.scm (r-seqlogo): Update to 1.54.3. Ricardo Wurmus
2020-06-13gnu: r-genomation: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-genomation): Update to 1.20.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-seqpattern: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-seqpattern): Update to 1.20.0. Ricardo Wurmus
2020-06-13gnu: r-impute: Update to 1.62.0....* gnu/packages/bioinformatics.scm (r-impute): Update to 1.62.0. Ricardo Wurmus
2020-06-13gnu: r-bsgenome: Update to 1.56.0....* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.56.0. [propagated-inputs]: Add r-matrixstats. Ricardo Wurmus
2020-06-13gnu: r-topgo: Update to 2.40.0....* gnu/packages/bioinformatics.scm (r-topgo): Update to 2.40.0. Ricardo Wurmus
2020-06-13gnu: r-genomicfeatures: Update to 1.40.0....* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-rtracklayer: Update to 1.48.0....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.48.0. Ricardo Wurmus
2020-06-13gnu: r-genomicalignments: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.24.0. Ricardo Wurmus
2020-06-13gnu: r-summarizedexperiment: Update to 1.18.1....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-delayedarray: Update to 0.14.0....* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.14.0. [propagated-inputs]: Remove r-biocparallel. Ricardo Wurmus
2020-06-13gnu: r-rsamtools: Update to 2.4.0....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.4.0. Ricardo Wurmus
2020-06-13gnu: r-biostrings: Update to 2.56.0....* gnu/packages/bioinformatics.scm ( r-biostrings): Update to 2.56.0. [propagated-inputs]: Add r-crayon. Ricardo Wurmus
2020-06-13gnu: r-biocparallel: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.22.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biomart: Update to 2.44.0....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.44.0. Ricardo Wurmus
2020-06-13gnu: r-annotationdbi: Update to 1.50.0....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.50.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biobase: Update to 2.48.0....* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.48.0. Ricardo Wurmus
2020-06-13gnu: r-genomicranges: Update to 1.40.0....* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.40.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-xvector: Update to 0.28.0....* gnu/packages/bioinformatics.scm (r-xvector): Update to 0.28.0. Ricardo Wurmus
2020-06-13gnu: r-limma: Update to 3.44.1....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.44.1. Ricardo Wurmus
2020-06-13gnu: r-variantannotation: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.34.0. Ricardo Wurmus
2020-06-13gnu: r-edger: Update to 3.30.3....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.30.3. Ricardo Wurmus
2020-06-13gnu: r-genomeinfodb: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.24.0. Ricardo Wurmus
2020-06-13gnu: r-iranges: Update to 2.22.2....* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.22.2. Ricardo Wurmus
2020-06-13gnu: r-s4vectors: Update to 0.26.1....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.26.1. Ricardo Wurmus
2020-06-13gnu: r-bioccheck: Update to 1.24.0....* gnu/packages/bioinformatics.scm (r-bioccheck): Update to 1.24.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biocstyle: Update to 2.16.0....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.16.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-biocviews: Update to 1.56.0....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.0. Ricardo Wurmus
2020-06-13gnu: r-grohmm: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-grohmm): Update to 1.22.0. Ricardo Wurmus
2020-06-13gnu: r-systempiper: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.22.0. [propagated-inputs]: Add r-assertthat, r-magrittr, r-rsvg, r-dot, and r-stringr; remove r-biocgenerics. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-shortread: Update to 1.46.0....* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.46.0. Ricardo Wurmus
2020-06-13gnu: r-gostats: Update to 2.54.0....* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.54.0. Ricardo Wurmus
2020-06-13gnu: r-category: Update to 2.54.0....* gnu/packages/bioinformatics.scm (r-category): Update to 2.54.0. Ricardo Wurmus
2020-06-13gnu: r-gseabase: Update to 1.50.1....* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.50.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-rbgl: Update to 1.64.0....* gnu/packages/bioinformatics.scm (r-rbgl): Update to 1.64.0. Ricardo Wurmus
2020-06-13gnu: r-annotationforge: Update to 1.30.1....* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.30.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-dexseq: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-deseq2: Update to 1.28.1....* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.28.1. [propagated-inputs]: Remove r-hmisc. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-genefilter: Update to 1.70.0....* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.70.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-13gnu: r-gprofiler: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-gprofiler): Move this variable from here... * gnu/packages/cran.scm (r-gprofiler): ...to here. Ricardo Wurmus
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