| Age | Commit message (Expand) | Author |
|---|
| 2017-11-14 | gnu: diamond: Update to 0.9.13.•••* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.13.
| Ben Woodcroft |
| 2017-11-13 | gnu: Move test packages from perl to perl-check.•••* gnu/packages/perl.scm (perl-test2-bundle-extended,
perl-test2-plugin-nowarnings, perl-test-base, perl-test-class,
perl-test-class-most, perl-test-cleannamespaces, perl-test-command,
perl-test-cpan-meta, perl-test-cpan-meta-json, perl-test-deep,
perl-test-differences, perl-test-directory, perl-test-eol,
perl-test-exception, perl-test-fatal, perl-test-file-sharedir-dist,
perl-test-files, perl-test-harness, perl-test-leaktrace,
perl-test-longstring, perl-test-manifest, perl-test-memory-cycle,
perl-test-mockobject, perl-test-mocktime, perl-test-most, perl-test-needs,
perl-test-notabs, perl-test-nowarnings, perl-test-number-delta,
perl-test-output, perl-test-pod, perl-test-pod-coverage, perl-test-requires,
perl-test-script, perl-test-sharedfork, perl-test-simple, perl-test-taint,
perl-test-tester, perl-test-trap, perl-test-utf8, perl-test-warn,
perl-test-warnings, perl-test-without-module, perl-test-writevariants,
perl-test-yaml, perl-test-trailingspace): Move variables to ...
* gnu/packages/perl-check.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/admin.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/crypto.scm,
gnu/packages/databases.scm,
gnu/packages/glib.scm,
gnu/packages/gnupg.scm,
gnu/packages/image-viewers.scm,
gnu/packages/language.scm,
gnu/packages/networking.scm,
gnu/packages/package-management.scm,
gnu/packages/perl.scm,
gnu/packages/terminals.scm,
gnu/packages/tex.scm,
gnu/packages/version-control.scm,
gnu/packages/web.scm,
gnu/packages/xml.scm,
gnu/packages/xorg.scm: Use perl-check module.
| Ricardo Wurmus |
| 2017-11-13 | gnu: cd-hit: Update source tarball hash.•••* gnu/packages/bioinformatics.scm (cd-hit)[source]: Update hash.
| Ricardo Wurmus |
| 2017-11-11 | gnu: methylkit: Use new home page.•••* gnu/packages/bioinformatics.scm (methylkit)[home-page]: Update.
| Tobias Geerinckx-Rice |
| 2017-11-11 | gnu: vsearch: Update to 2.6.0.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.6.0.
| Ben Woodcroft |
| 2017-11-10 | gnu: cutadapt: Update to 1.14.•••* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.14.
| Ricardo Wurmus |
| 2017-11-09 | gnu: roary: Update to 3.11.0.•••* gnu/packages/bioinformatics.scm (roary): Update to 3.11.0.
[inputs]: Add perl-digest-md5-file.
| Ben Woodcroft |
| 2017-11-08 | gnu: miso: Use pypi-uri.•••* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-hitc.•••* gnu/packages/bioinformatics.scm (r-hitc): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-fithic.•••* gnu/packages/bioinformatics.scm (r-fithic): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-sushi.•••* gnu/packages/bioinformatics.scm (r-sushi): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gwascat.•••* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gviz.•••* gnu/packages/bioinformatics.scm (r-gviz): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gqtlstats.•••* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-ldblock.•••* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-erma.•••* gnu/packages/bioinformatics.scm (r-erma): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-homo-sapiens.•••* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-org-hs-eg-db.•••* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-snpstats.•••* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gqtlbase.•••* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gprofiler.•••* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-ggbio.•••* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-biovizbase.•••* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-organismdbi.•••* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-ensembldb.•••* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-annotationfilter.•••* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-dirichletmultinomial.•••* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-complexheatmap.•••* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-genomicfiles.•••* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-gage.•••* gnu/packages/bioinformatics.scm (r-gage): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: Add r-keggrest.•••* gnu/packages/bioinformatics.scm (r-keggrest): New variable.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-msnbase: Update to 2.4.0.•••* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.4.0.
[propagated-inputs]: Add r-lattice; remove r-reshape2.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-mutationalpatterns: Update to 1.4.0.•••* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.0.
[propagated-inputs]: Add r-cowplot, r-ggdendro, and r-s4vectors.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-annotationhub: Update to 2.10.0.•••* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.10.0.
[propagated-inputs]: Add r-curl.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-mzr: Remove bundled copy of boost.•••* gnu/packages/bioinformatics.scm (r-mzr)[source]: Remove boost source.
[arguments]: Add build phase "use-system-boost" to link with our boost
package and avoid building the bundled sources.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-mzr: Update to 2.12.0.•••* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.12.0.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-mzid: Update to 1.16.0.•••* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.16.0.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-chipseq: Update to 1.28.0.•••* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.28.0.
[propagated-inputs]: Add r-lattice.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-genomicfeatures: Update to 1.30.0.•••* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.30.0.
[propagated-inputs]: Add r-rmysql.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-rtracklayer: Update to 1.38.0.•••* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.0.
[arguments]: Adjust patch to use system zlib.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-biocparallel: Update to 1.12.0.•••* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.12.0.
[propagated-inputs]: Add r-bh.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-biomart: Update to 2.34.0.•••* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.0.
[propagated-inputs]: Add r-progress and r-stringr.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-edger: Update to 3.20.1.•••* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.1.
[propagated-inputs]: Add r-rcpp.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-gostats: Update to 2.44.0.•••* gnu/packages/bioinformatics.scm (r-gostats): Update to 2.44.0.
[propagated-inputs]: Add r-rgraphviz.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-category: Update to 2.44.0.•••* gnu/packages/bioinformatics.scm (r-category): Update to 2.44.0.
[propagated-inputs]: Remove r-rsqlite; add r-dbi.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-vsn: Update to 3.46.0.•••* gnu/packages/bioinformatics.scm (r-vsn): Update to 3.46.0.
[propagated-inputs]: Remove r-hexbin.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-motifrg: Rename input label.•••* gnu/packages/bioinformatics.scm (r-motifrg)[propagated-inputs]:
Rename label of r-bsgenome-hsapiens-ucsc-hg19.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-motifrg: Update to 1.22.0.•••* gnu/packages/bioinformatics.scm (r-motifrg): Update to 1.22.0.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-qvalue: Update to 2.10.0.•••* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.10.0.
| Ricardo Wurmus |
| 2017-11-07 | gnu: r-fastseq: Update to 1.24.0.•••* gnu/packages/bioinformatics.scm (r-fastseq): Update to 1.24.0.
| Ricardo Wurmus |
